Wall clock time and date at job start Mon Mar 30 2020 01:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99934 * 2 1 4 4 O 1.20827 * 120.00039 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00245 * 180.02562 * 3 2 1 6 6 N 1.46494 * 109.47347 * 179.97438 * 5 3 2 7 7 C 1.36935 * 120.00120 * 275.87652 * 6 5 3 8 8 H 1.08001 * 120.00415 * 175.88425 * 7 6 5 9 9 C 1.38817 * 119.99822 * 355.88429 * 7 6 5 10 10 N 1.31621 * 119.99674 * 33.60214 * 9 7 6 11 11 Si 1.86796 * 120.00209 * 213.60934 * 9 7 6 12 12 H 1.48502 * 109.47177 * 84.99585 * 11 9 7 13 13 H 1.48499 * 109.47525 * 204.99657 * 11 9 7 14 14 H 1.48503 * 109.46811 * 324.99914 * 11 9 7 15 15 C 1.46498 * 120.00238 * 95.87747 * 6 5 3 16 16 C 1.50704 * 109.47219 * 270.00265 * 15 6 5 17 17 C 1.38275 * 119.98130 * 270.25349 * 16 15 6 18 18 C 1.38223 * 120.04630 * 180.25417 * 17 16 15 19 19 C 1.38219 * 120.02725 * 359.48888 * 18 17 16 20 20 C 1.38439 * 119.97508 * 0.25504 * 19 18 17 21 21 F 1.35095 * 120.03048 * 179.97438 * 20 19 18 22 22 C 1.38167 * 119.98970 * 89.99558 * 16 15 6 23 23 H 1.09007 * 109.47442 * 300.00221 * 1 2 3 24 24 H 1.09001 * 109.47235 * 60.00246 * 1 2 3 25 25 H 1.09004 * 109.46952 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47253 * 59.99317 * 5 3 2 27 27 H 1.09004 * 109.46907 * 299.99427 * 5 3 2 28 28 H 0.97008 * 119.99735 * 180.02562 * 10 9 7 29 29 H 1.09004 * 109.47489 * 149.99866 * 15 6 5 30 30 H 1.09000 * 109.47209 * 29.99773 * 15 6 5 31 31 H 1.07999 * 119.97510 * 0.02562 * 17 16 15 32 32 H 1.08004 * 119.98861 * 179.77006 * 18 17 16 33 33 H 1.08003 * 120.01465 * 180.23466 * 19 18 17 34 34 H 1.07995 * 120.01324 * 0.02885 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6798 -0.0011 7 6 4.0589 3.3705 -1.1809 8 1 4.3003 4.4232 -1.1757 9 6 3.8268 2.7177 -2.3838 10 7 2.9498 1.7380 -2.4424 11 14 4.7593 3.2295 -3.9193 12 1 6.0702 2.5327 -3.9577 13 1 3.9695 2.8647 -5.1228 14 1 4.9797 4.6979 -3.8982 15 6 4.3144 3.3457 1.2606 16 6 3.0731 3.9748 1.8393 17 6 2.7362 5.2734 1.5043 18 6 1.6009 5.8535 2.0384 19 6 0.7954 5.1324 2.8996 20 6 1.1289 3.8304 3.2314 21 9 0.3427 3.1247 4.0735 22 6 2.2695 3.2520 2.6999 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.9557 0.7810 -0.8907 27 1 3.9564 0.7807 0.8892 28 1 2.7879 1.2816 -3.2829 29 1 5.0617 4.1179 1.0779 30 1 4.7123 2.6141 1.9638 31 1 3.3625 5.8360 0.8279 32 1 1.3406 6.8691 1.7790 33 1 -0.0937 5.5846 3.3137 34 1 2.5309 2.2365 2.9584 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194331064.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:07 Heat of formation + Delta-G solvation = -72.368845 kcal Electronic energy + Delta-G solvation = -21066.916733 eV Core-core repulsion = 17687.781505 eV Total energy + Delta-G solvation = -3379.135228 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.43607 -39.04002 -38.41268 -35.92592 -34.52856 -32.17867 -30.36469 -29.91560 -28.07117 -26.08096 -25.76755 -22.51223 -22.12220 -20.70025 -19.70789 -17.07887 -16.76187 -16.15420 -15.72337 -15.68227 -15.51352 -15.08897 -15.04438 -14.67182 -13.77935 -13.63070 -13.37030 -12.98891 -12.74167 -12.23550 -12.18625 -11.67170 -11.60122 -11.28077 -11.08536 -10.96521 -10.78613 -10.64241 -10.44861 -10.22907 -9.98643 -9.57418 -9.05162 -8.49161 -8.34126 -8.08703 -7.28553 -6.07216 -3.20560 1.76739 1.80410 3.33308 3.41923 3.42956 3.89634 4.05028 4.15852 4.45917 4.76638 5.11549 5.23321 5.32454 5.38799 5.57862 5.78888 5.83356 5.90201 5.92024 6.03245 6.12168 6.25038 6.34231 6.45933 6.60525 6.61869 6.67712 6.85212 7.07045 7.17855 7.49231 7.65212 7.80584 8.02211 8.90365 9.40133 9.62803 10.02002 11.04755 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018427 B = 0.008382 C = 0.006554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.175413 B = 3339.620584 C = 4271.202187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.384 6.384 3 C 0.460 3.540 4 O -0.496 6.496 5 C 0.177 3.823 6 N -0.557 5.557 7 C -0.255 4.255 8 H 0.086 0.914 9 C 0.008 3.992 10 N -0.888 5.888 11 Si 0.899 3.101 12 H -0.285 1.285 13 H -0.294 1.294 14 H -0.280 1.280 15 C 0.176 3.824 16 C -0.049 4.049 17 C -0.109 4.109 18 C -0.096 4.096 19 C -0.171 4.171 20 C 0.091 3.909 21 F -0.152 7.152 22 C -0.138 4.138 23 H 0.044 0.956 24 H 0.051 0.949 25 H 0.079 0.921 26 H 0.117 0.883 27 H 0.054 0.946 28 H 0.259 0.741 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.132 1.083 8.334 8.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.302 6.302 3 C 0.299 3.701 4 O -0.380 6.380 5 C 0.048 3.952 6 N -0.275 5.275 7 C -0.383 4.383 8 H 0.103 0.897 9 C -0.191 4.191 10 N -0.531 5.531 11 Si 0.728 3.272 12 H -0.212 1.212 13 H -0.221 1.221 14 H -0.205 1.205 15 C 0.050 3.950 16 C -0.053 4.053 17 C -0.128 4.128 18 C -0.114 4.114 19 C -0.191 4.191 20 C 0.072 3.928 21 F -0.131 7.131 22 C -0.158 4.158 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.135 0.865 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.405 1.273 8.185 8.293 hybrid contribution -0.639 0.172 -0.970 1.175 sum -1.044 1.445 7.214 7.431 Atomic orbital electron populations 1.22828 0.80004 1.01172 1.01147 1.86549 1.20839 1.36979 1.85803 1.25575 0.93473 0.80334 0.70704 1.90508 1.66477 1.36199 1.44833 1.20927 0.85692 0.86774 1.01781 1.44707 1.73533 1.07346 1.01909 1.19262 1.41905 0.94699 0.82465 0.89670 1.24739 0.98025 0.98442 0.97845 1.70052 1.29488 1.27059 1.26537 0.86332 0.80387 0.78220 0.82253 1.21181 1.22083 1.20527 1.20119 0.91680 0.95931 0.87312 1.20898 0.99322 0.93111 0.91941 1.20987 0.97360 0.95286 0.99180 1.20856 0.94613 0.99457 0.96450 1.20852 1.01759 0.93659 1.02782 1.17657 0.91040 0.90826 0.93320 1.91423 1.73693 1.78784 1.69213 1.20799 0.94854 1.00087 1.00033 0.93749 0.92980 0.90262 0.86500 0.92810 0.93028 0.91053 0.92533 0.86009 0.86095 0.86056 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 10.56 101.05 1.07 1.88 16 2 O -0.38 -8.52 10.57 -39.25 -0.41 -8.94 16 3 C 0.46 11.12 6.11 36.01 0.22 11.34 16 4 O -0.50 -13.36 14.34 -18.75 -0.27 -13.63 16 5 C 0.18 4.00 5.64 -5.20 -0.03 3.97 16 6 N -0.56 -12.73 2.06 -175.98 -0.36 -13.09 16 7 C -0.26 -6.47 9.47 -15.06 -0.14 -6.62 16 8 H 0.09 2.12 8.02 -52.49 -0.42 1.70 16 9 C 0.01 0.22 4.88 -17.43 -0.09 0.13 16 10 N -0.89 -24.33 9.26 55.49 0.51 -23.81 16 11 Si 0.90 20.69 29.66 -169.99 -5.04 15.65 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 C 0.18 3.29 5.83 -5.19 -0.03 3.26 16 16 C -0.05 -0.94 4.75 -104.63 -0.50 -1.43 16 17 C -0.11 -1.98 9.70 -39.57 -0.38 -2.37 16 18 C -0.10 -1.58 10.04 -39.59 -0.40 -1.98 16 19 C -0.17 -2.90 10.03 -39.51 -0.40 -3.30 16 20 C 0.09 1.69 7.30 -39.41 -0.29 1.40 16 21 F -0.15 -2.79 17.27 2.25 0.04 -2.75 16 22 C -0.14 -2.62 8.81 -39.51 -0.35 -2.96 16 23 H 0.04 0.81 8.14 -51.92 -0.42 0.39 16 24 H 0.05 1.04 8.13 -51.93 -0.42 0.62 16 25 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.12 2.86 6.14 -51.93 -0.32 2.54 16 27 H 0.05 1.03 7.83 -51.93 -0.41 0.62 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.07 1.23 7.98 -51.93 -0.41 0.82 16 30 H 0.06 0.92 7.80 -51.93 -0.40 0.51 16 31 H 0.12 2.10 8.06 -52.49 -0.42 1.67 16 32 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 33 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 34 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 300.32 15.07 4.53 4.53 Total: -1.00 -30.45 300.32 -6.38 -36.83 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -4.06 Total: 1.89 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -1.31 Total: 3.33 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.15 Total: -36.91 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.68 Total: -22.57 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.04 Total: 15.65 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.45 -6.38 -36.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194331064.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.539 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds