Wall clock time and date at job start Mon Mar 30 2020 01:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99934 * 2 1 4 4 O 1.20827 * 120.00039 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00245 * 180.02562 * 3 2 1 6 6 N 1.46494 * 109.47347 * 179.97438 * 5 3 2 7 7 C 1.36935 * 120.00120 * 275.87652 * 6 5 3 8 8 H 1.08001 * 120.00415 * 175.88425 * 7 6 5 9 9 C 1.38817 * 119.99822 * 355.88429 * 7 6 5 10 10 N 1.31621 * 119.99674 * 33.60214 * 9 7 6 11 11 Si 1.86796 * 120.00209 * 213.60934 * 9 7 6 12 12 H 1.48502 * 109.47177 * 84.99585 * 11 9 7 13 13 H 1.48499 * 109.47525 * 204.99657 * 11 9 7 14 14 H 1.48503 * 109.46811 * 324.99914 * 11 9 7 15 15 C 1.46498 * 120.00238 * 95.87747 * 6 5 3 16 16 C 1.50704 * 109.47219 * 270.00265 * 15 6 5 17 17 C 1.38275 * 119.98130 * 270.25349 * 16 15 6 18 18 C 1.38223 * 120.04630 * 180.25417 * 17 16 15 19 19 C 1.38219 * 120.02725 * 359.48888 * 18 17 16 20 20 C 1.38439 * 119.97508 * 0.25504 * 19 18 17 21 21 F 1.35095 * 120.03048 * 179.97438 * 20 19 18 22 22 C 1.38167 * 119.98970 * 89.99558 * 16 15 6 23 23 H 1.09007 * 109.47442 * 300.00221 * 1 2 3 24 24 H 1.09001 * 109.47235 * 60.00246 * 1 2 3 25 25 H 1.09004 * 109.46952 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47253 * 59.99317 * 5 3 2 27 27 H 1.09004 * 109.46907 * 299.99427 * 5 3 2 28 28 H 0.97008 * 119.99735 * 180.02562 * 10 9 7 29 29 H 1.09004 * 109.47489 * 149.99866 * 15 6 5 30 30 H 1.09000 * 109.47209 * 29.99773 * 15 6 5 31 31 H 1.07999 * 119.97510 * 0.02562 * 17 16 15 32 32 H 1.08004 * 119.98861 * 179.77006 * 18 17 16 33 33 H 1.08003 * 120.01465 * 180.23466 * 19 18 17 34 34 H 1.07995 * 120.01324 * 0.02885 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6798 -0.0011 7 6 4.0589 3.3705 -1.1809 8 1 4.3003 4.4232 -1.1757 9 6 3.8268 2.7177 -2.3838 10 7 2.9498 1.7380 -2.4424 11 14 4.7593 3.2295 -3.9193 12 1 6.0702 2.5327 -3.9577 13 1 3.9695 2.8647 -5.1228 14 1 4.9797 4.6979 -3.8982 15 6 4.3144 3.3457 1.2606 16 6 3.0731 3.9748 1.8393 17 6 2.7362 5.2734 1.5043 18 6 1.6009 5.8535 2.0384 19 6 0.7954 5.1324 2.8996 20 6 1.1289 3.8304 3.2314 21 9 0.3427 3.1247 4.0735 22 6 2.2695 3.2520 2.6999 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.9557 0.7810 -0.8907 27 1 3.9564 0.7807 0.8892 28 1 2.7879 1.2816 -3.2829 29 1 5.0617 4.1179 1.0779 30 1 4.7123 2.6141 1.9638 31 1 3.3625 5.8360 0.8279 32 1 1.3406 6.8691 1.7790 33 1 -0.0937 5.5846 3.3137 34 1 2.5309 2.2365 2.9584 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194331064.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:06 Heat of formation + Delta-G solvation = -88.144290 kcal Electronic energy + Delta-G solvation = -21067.600808 eV Core-core repulsion = 17687.781505 eV Total energy + Delta-G solvation = -3379.819303 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.85186 -40.79057 -39.87461 -37.62452 -36.36146 -33.87839 -31.97463 -31.32949 -29.75461 -27.67405 -27.44459 -24.17755 -23.53436 -22.20728 -21.48150 -18.85821 -18.28609 -17.89702 -17.34563 -17.10723 -17.04413 -16.77686 -16.52660 -16.45300 -15.53949 -15.11167 -14.95913 -14.43577 -14.20761 -13.90230 -13.80583 -13.43436 -13.15099 -12.73828 -12.71828 -12.66898 -12.40273 -12.18730 -12.02900 -11.96779 -11.83301 -11.34464 -10.91353 -10.35923 -9.77711 -9.51653 -9.08839 -8.00734 -5.13948 0.36210 0.43499 1.50811 1.55491 1.60954 2.08031 2.35770 2.56800 2.78989 3.19956 3.39231 3.68867 3.90217 3.99290 4.21713 4.36811 4.43269 4.44280 4.51845 4.53575 4.64220 4.68980 4.84989 5.04445 5.08817 5.23679 5.25168 5.28065 5.48202 5.71069 5.76774 6.00799 6.11897 6.17286 7.00898 7.55405 7.80582 8.16234 9.10002 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018427 B = 0.008382 C = 0.006554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.175413 B = 3339.620584 C = 4271.202187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.390 6.390 3 C 0.461 3.539 4 O -0.529 6.529 5 C 0.176 3.824 6 N -0.568 5.568 7 C -0.252 4.252 8 H 0.086 0.914 9 C -0.041 4.041 10 N -0.917 5.917 11 Si 0.956 3.044 12 H -0.281 1.281 13 H -0.309 1.309 14 H -0.274 1.274 15 C 0.172 3.828 16 C -0.062 4.062 17 C -0.124 4.124 18 C -0.094 4.094 19 C -0.170 4.170 20 C 0.072 3.928 21 F -0.154 7.154 22 C -0.149 4.149 23 H 0.045 0.955 24 H 0.033 0.967 25 H 0.123 0.877 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.250 0.750 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.128 0.872 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.008 1.724 9.157 9.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.307 6.307 3 C 0.302 3.698 4 O -0.416 6.416 5 C 0.047 3.953 6 N -0.286 5.286 7 C -0.381 4.381 8 H 0.104 0.896 9 C -0.237 4.237 10 N -0.563 5.563 11 Si 0.786 3.214 12 H -0.208 1.208 13 H -0.237 1.237 14 H -0.199 1.199 15 C 0.047 3.953 16 C -0.065 4.065 17 C -0.143 4.143 18 C -0.112 4.112 19 C -0.189 4.189 20 C 0.053 3.947 21 F -0.133 7.133 22 C -0.168 4.168 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.142 0.858 26 H 0.114 0.886 27 H 0.106 0.894 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.146 0.854 32 H 0.171 0.829 33 H 0.165 0.835 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.244 1.922 9.042 9.247 hybrid contribution -0.738 -0.003 -1.113 1.336 sum -0.982 1.919 7.929 8.217 Atomic orbital electron populations 1.23066 0.78057 1.03838 1.00252 1.86516 1.22764 1.36071 1.85375 1.25834 0.94065 0.80236 0.69621 1.90477 1.67315 1.37278 1.46526 1.20893 0.84988 0.87058 1.02334 1.44760 1.73638 1.07505 1.02742 1.19489 1.40297 0.94748 0.83555 0.89621 1.25329 0.98955 0.99233 1.00177 1.70183 1.31121 1.28723 1.26273 0.85440 0.78999 0.77996 0.79002 1.20793 1.23678 1.19929 1.20328 0.91887 0.96834 0.86228 1.20907 0.99270 0.93744 0.92568 1.21254 0.98223 0.95342 0.99439 1.21234 0.93662 1.00836 0.95452 1.21220 1.02476 0.93015 1.02207 1.17916 0.91289 0.91693 0.93829 1.91413 1.73685 1.78950 1.69277 1.20897 0.95260 1.00270 1.00405 0.93657 0.94830 0.85846 0.88555 0.89405 0.94077 0.89772 0.90070 0.85429 0.82870 0.83458 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.54 10.56 113.37 1.20 2.73 16 2 O -0.39 -17.08 10.57 -51.40 -0.54 -17.62 16 3 C 0.46 22.21 6.11 71.24 0.44 22.64 16 4 O -0.53 -28.53 14.34 21.96 0.31 -28.21 16 5 C 0.18 7.87 5.64 85.63 0.48 8.35 16 6 N -0.57 -25.44 2.06 -710.69 -1.47 -26.91 16 7 C -0.25 -12.62 9.47 84.04 0.80 -11.83 16 8 H 0.09 4.19 8.02 -2.91 -0.02 4.17 16 9 C -0.04 -2.16 4.88 84.86 0.41 -1.75 16 10 N -0.92 -50.95 9.26 21.65 0.20 -50.75 16 11 Si 0.96 42.86 29.66 68.60 2.03 44.90 16 12 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 13 H -0.31 -14.48 7.11 99.48 0.71 -13.78 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 15 C 0.17 6.17 5.83 85.63 0.50 6.67 16 16 C -0.06 -2.27 4.75 -19.87 -0.09 -2.36 16 17 C -0.12 -4.29 9.70 22.28 0.22 -4.07 16 18 C -0.09 -2.88 10.04 22.26 0.22 -2.66 16 19 C -0.17 -5.39 10.03 22.31 0.22 -5.16 16 20 C 0.07 2.57 7.30 22.38 0.16 2.74 16 21 F -0.15 -5.48 17.27 44.97 0.78 -4.70 16 22 C -0.15 -5.48 8.81 22.31 0.20 -5.28 16 23 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 24 H 0.03 1.33 8.13 -2.39 -0.02 1.31 16 25 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 26 H 0.10 4.74 6.14 -2.39 -0.01 4.72 16 27 H 0.09 3.22 7.83 -2.38 -0.02 3.20 16 28 H 0.25 13.81 8.31 -92.70 -0.77 13.04 16 29 H 0.08 2.75 7.98 -2.38 -0.02 2.73 16 30 H 0.08 2.46 7.80 -2.39 -0.02 2.44 16 31 H 0.13 4.19 8.06 -2.91 -0.02 4.16 16 32 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 33 H 0.15 3.81 8.06 -2.91 -0.02 3.78 16 34 H 0.12 4.23 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -64.68 300.32 7.17 -57.51 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 1.10 Total: 15.77 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 4.75 Total: 10.01 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -1.27 Total: -77.66 kcal Atomic # 8 Polarization: -45.60 SS G_CDS: -0.23 Total: -45.83 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.78 Total: -4.70 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.90 kcal Total: -64.68 7.17 -57.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194331064.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.635 kcal (2) G-P(sol) polarization free energy of solvation -64.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds