Wall clock time and date at job start Mon Mar 30 2020 00:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35693 * 116.99616 * 2 1 4 4 C 1.38687 * 120.12795 * 359.72790 * 3 2 1 5 5 C 1.38058 * 120.11116 * 179.70105 * 4 3 2 6 6 C 1.38731 * 120.36716 * 0.59172 * 5 4 3 7 7 F 1.35102 * 119.87643 * 179.70115 * 6 5 4 8 8 C 1.37979 * 120.24699 * 359.68475 * 6 5 4 9 9 C 1.39725 * 119.88355 * 0.02562 * 8 6 5 10 10 C 1.47541 * 120.18173 * 180.02562 * 9 8 6 11 11 O 1.21588 * 120.00188 * 179.97438 * 10 9 8 12 12 N 1.34776 * 119.99823 * 359.97151 * 10 9 8 13 13 C 1.46502 * 119.99953 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47180 * 325.00155 * 13 12 10 15 15 C 1.52998 * 109.47131 * 85.00095 * 13 12 10 16 16 C 1.50697 * 109.47313 * 205.00721 * 13 12 10 17 17 H 1.08000 * 120.00039 * 359.97438 * 16 13 12 18 18 C 1.37874 * 120.00374 * 180.02562 * 16 13 12 19 19 N 1.31513 * 120.00217 * 179.97438 * 18 16 13 20 20 Si 1.86797 * 119.99881 * 359.97438 * 18 16 13 21 21 H 1.48504 * 109.47439 * 89.99909 * 20 18 16 22 22 H 1.48503 * 109.47504 * 210.00039 * 20 18 16 23 23 H 1.48506 * 109.47179 * 330.00378 * 20 18 16 24 24 H 1.09001 * 109.47103 * 60.00474 * 1 2 3 25 25 H 1.09004 * 109.47054 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47187 * 300.00034 * 1 2 3 27 27 H 1.07999 * 119.94074 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.81580 * 180.27191 * 5 4 3 29 29 H 1.08001 * 120.06155 * 180.02562 * 8 6 5 30 30 H 0.96998 * 120.00482 * 0.02562 * 12 10 9 31 31 H 1.08994 * 109.47074 * 300.00181 * 15 13 12 32 32 H 1.08994 * 109.46834 * 60.00196 * 15 13 12 33 33 H 1.08998 * 109.47234 * 180.02562 * 15 13 12 34 34 H 0.97004 * 120.00045 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2922 2.3738 -0.0057 5 6 1.9192 3.6038 0.0005 6 6 3.3041 3.6850 0.0002 7 9 3.9074 4.8939 0.0002 8 6 4.0678 2.5358 0.0001 9 6 3.4440 1.2855 -0.0001 10 6 4.2542 0.0524 0.0004 11 8 3.7080 -1.0339 0.0007 12 7 5.5997 0.1301 0.0005 13 6 6.4041 -1.0942 0.0004 14 1 5.9001 -1.8602 0.5897 15 6 6.5792 -1.5893 -1.4366 16 6 7.7560 -0.8071 0.6011 17 1 7.9926 0.1880 0.9479 18 6 8.6914 -1.8145 0.7071 19 7 9.8714 -1.5638 1.2309 20 14 8.2827 -3.5355 0.1068 21 1 8.6685 -3.6663 -1.3213 22 1 9.0302 -4.5323 0.9147 23 1 6.8242 -3.7761 0.2494 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2136 2.3185 -0.0106 28 1 1.3283 4.5078 0.0005 29 1 5.1457 2.6025 0.0002 30 1 6.0355 0.9967 0.0006 31 1 5.6014 -1.7970 -1.8710 32 1 7.0833 -0.8234 -2.0258 33 1 7.1774 -2.5006 -1.4366 34 1 10.5296 -2.2724 1.3052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194651141.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:18 Heat of formation + Delta-G solvation = -84.073020 kcal Electronic energy + Delta-G solvation = -20045.653460 eV Core-core repulsion = 16666.010701 eV Total energy + Delta-G solvation = -3379.642759 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.88710 -40.47290 -38.61072 -37.13829 -34.95067 -32.55622 -31.65145 -29.83956 -29.55206 -27.30031 -25.19136 -24.26053 -22.39286 -21.22784 -19.69102 -18.63228 -17.72903 -17.00549 -16.60806 -15.99408 -15.68263 -15.45786 -15.28575 -14.88530 -14.54356 -14.24880 -14.05731 -13.28588 -13.01425 -12.95114 -12.75717 -12.41789 -12.17666 -11.98298 -11.76236 -11.29362 -11.24028 -11.03769 -10.78836 -10.16077 -9.68751 -9.33304 -9.20299 -9.16823 -8.73480 -8.26872 -8.06374 -6.18746 -4.21255 0.68534 1.06413 3.01406 3.15039 3.25719 3.37558 3.42696 3.81563 3.93870 4.14803 4.34054 4.48554 4.55639 4.84539 5.00730 5.05133 5.12001 5.16261 5.36087 5.42158 5.58379 5.79888 5.88954 5.98928 6.34407 6.41346 6.51033 6.58906 6.88708 7.18669 7.27526 7.31055 7.53937 8.17068 8.53550 8.78079 8.94630 9.42045 10.93402 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.023220 B = 0.005417 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.568549 B = 5167.420873 C = 6160.754278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.273 6.273 3 C 0.172 3.828 4 C -0.195 4.195 5 C -0.094 4.094 6 C 0.051 3.949 7 F -0.139 7.139 8 C -0.081 4.081 9 C -0.132 4.132 10 C 0.547 3.453 11 O -0.529 6.529 12 N -0.697 5.697 13 C 0.238 3.762 14 H 0.050 0.950 15 C -0.161 4.161 16 C -0.535 4.535 17 H 0.080 0.920 18 C 0.078 3.922 19 N -0.893 5.893 20 Si 0.885 3.115 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.261 1.261 24 H 0.055 0.945 25 H 0.102 0.898 26 H 0.055 0.945 27 H 0.142 0.858 28 H 0.140 0.860 29 H 0.150 0.850 30 H 0.393 0.607 31 H 0.036 0.964 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.954 9.161 -3.542 20.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.184 6.184 3 C 0.123 3.877 4 C -0.214 4.214 5 C -0.113 4.113 6 C 0.031 3.969 7 F -0.118 7.118 8 C -0.101 4.101 9 C -0.136 4.136 10 C 0.332 3.668 11 O -0.407 6.407 12 N -0.347 5.347 13 C 0.134 3.866 14 H 0.068 0.932 15 C -0.219 4.219 16 C -0.573 4.573 17 H 0.098 0.902 18 C -0.125 4.125 19 N -0.530 5.530 20 Si 0.715 3.285 21 H -0.203 1.203 22 H -0.222 1.222 23 H -0.186 1.186 24 H 0.073 0.927 25 H 0.121 0.879 26 H 0.074 0.926 27 H 0.160 0.840 28 H 0.157 0.843 29 H 0.167 0.833 30 H 0.227 0.773 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.027 8.107 -3.482 20.070 hybrid contribution 0.071 -0.006 -0.318 0.326 sum -17.956 8.101 -3.800 20.062 Atomic orbital electron populations 1.23180 0.78964 1.04416 1.00994 1.86459 1.20485 1.24905 1.86540 1.19074 0.91031 0.85034 0.92553 1.21051 1.00508 0.91052 1.08781 1.21017 0.92680 0.98679 0.98888 1.17347 0.90846 0.80471 1.08200 1.91507 1.83705 1.42135 1.94454 1.21271 1.01157 0.89932 0.97740 1.19513 0.91044 0.94176 1.08915 1.17836 0.82819 0.87871 0.78236 1.90784 1.71726 1.28261 1.49936 1.46135 1.04773 1.11261 1.72490 1.19121 0.91145 0.83305 0.93002 0.93187 1.22449 0.99371 1.00459 0.99668 1.21036 0.95827 0.98887 1.41524 0.90175 1.24822 0.94577 0.98796 0.94313 1.69869 1.05341 1.33639 1.44102 0.86877 0.79290 0.84143 0.78189 1.20299 1.22175 1.18585 0.92672 0.87916 0.92620 0.84023 0.84256 0.83288 0.77266 0.94442 0.92787 0.93426 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.27 -4.13 8.57 -40.68 -0.35 -4.48 16 3 C 0.17 2.46 6.70 -38.71 -0.26 2.20 16 4 C -0.20 -2.05 9.03 -39.48 -0.36 -2.41 16 5 C -0.09 -0.95 10.01 -39.47 -0.39 -1.35 16 6 C 0.05 0.62 7.28 -39.49 -0.29 0.34 16 7 F -0.14 -1.75 17.26 2.25 0.04 -1.72 16 8 C -0.08 -1.11 9.51 -39.12 -0.37 -1.49 16 9 C -0.13 -2.13 5.89 -104.85 -0.62 -2.75 16 10 C 0.55 11.07 7.73 -12.47 -0.10 10.98 16 11 O -0.53 -12.46 14.82 -16.61 -0.25 -12.70 16 12 N -0.70 -14.40 5.02 -55.98 -0.28 -14.68 16 13 C 0.24 5.78 2.15 -69.08 -0.15 5.63 16 14 H 0.05 1.34 6.63 -51.93 -0.34 0.99 16 15 C -0.16 -3.67 8.96 37.16 0.33 -3.34 16 16 C -0.53 -14.59 9.31 -34.44 -0.32 -14.91 16 17 H 0.08 2.29 7.98 -52.49 -0.42 1.87 16 18 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 19 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 20 Si 0.89 21.94 24.37 -169.99 -4.14 17.80 16 21 H -0.28 -6.62 6.87 56.52 0.39 -6.23 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.26 -6.44 6.53 56.52 0.37 -6.08 16 24 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 25 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 27 H 0.14 1.03 6.29 -52.49 -0.33 0.70 16 28 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.15 1.87 6.40 -52.49 -0.34 1.54 16 30 H 0.39 7.10 6.57 -40.82 -0.27 6.84 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 34 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 289.60 15.07 4.36 4.36 Total: -1.00 -33.08 289.60 -5.00 -38.08 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -3.54 Total: 2.94 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -1.63 Total: -3.81 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.49 Total: -40.48 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.59 Total: -17.18 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.14 Total: 17.80 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.08 -5.00 -38.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194651141.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.995 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds