Wall clock time and date at job start Mon Mar 30 2020 00:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47176 * 2 1 4 4 C 1.50697 * 109.47453 * 239.99486 * 2 1 3 5 5 H 1.08000 * 119.99889 * 240.00335 * 4 2 1 6 6 C 1.37876 * 119.99795 * 60.00184 * 4 2 1 7 7 N 1.31509 * 120.00453 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99951 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47438 * 89.99527 * 8 6 4 10 10 H 1.48499 * 109.46895 * 209.99782 * 8 6 4 11 11 H 1.48503 * 109.46640 * 329.99717 * 8 6 4 12 12 N 1.46504 * 109.46927 * 119.99475 * 2 1 3 13 13 C 1.34777 * 119.99646 * 274.99947 * 12 2 1 14 14 O 1.21276 * 120.00320 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99499 * 180.02562 * 13 12 2 16 16 O 1.42906 * 109.47037 * 180.02562 * 15 13 12 17 17 C 1.35948 * 117.00016 * 180.02562 * 16 15 13 18 18 C 1.38659 * 120.06296 * 359.97438 * 17 16 15 19 19 C 1.38182 * 119.96723 * 180.02562 * 18 17 16 20 20 C 1.38257 * 120.10006 * 359.97438 * 19 18 17 21 21 C 1.38255 * 120.12507 * 0.02562 * 20 19 18 22 22 C 1.38338 * 120.03035 * 359.97438 * 21 20 19 23 23 F 1.35094 * 120.05046 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.47411 * 300.00171 * 1 2 3 25 25 H 1.08996 * 109.46843 * 60.00842 * 1 2 3 26 26 H 1.09005 * 109.46798 * 180.02562 * 1 2 3 27 27 H 0.96992 * 120.00441 * 180.02562 * 7 6 4 28 28 H 0.96999 * 119.99848 * 95.00423 * 12 2 1 29 29 H 1.08994 * 109.47324 * 60.00587 * 15 13 12 30 30 H 1.08998 * 109.47294 * 300.00127 * 15 13 12 31 31 H 1.07992 * 120.01857 * 0.02562 * 18 17 16 32 32 H 1.08007 * 119.94945 * 180.02562 * 19 18 17 33 33 H 1.08001 * 119.94370 * 180.02562 * 20 19 18 34 34 H 1.07994 * 119.98956 * 179.72600 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2395 -2.4826 7 7 0.9429 0.8294 -2.6035 8 14 2.3215 -1.1206 -4.0078 9 1 1.3431 -2.1620 -4.4117 10 1 2.4867 -0.1417 -5.1122 11 1 3.6295 -1.7585 -3.7119 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0180 2.3572 14 8 1.8581 1.1586 2.4116 15 6 2.6498 -0.7282 3.5876 16 8 2.6972 0.1900 4.6816 17 6 3.1327 -0.2940 5.8751 18 6 3.5059 -1.6244 5.9907 19 6 3.9477 -2.1143 7.2048 20 6 4.0188 -1.2798 8.3048 21 6 3.6477 0.0474 8.1940 22 6 3.2046 0.5435 6.9811 23 9 2.8414 1.8401 6.8725 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7083 1.1605 -3.4845 28 1 2.2490 -1.6317 1.1528 29 1 3.6491 -1.1199 3.3981 30 1 1.9776 -1.5505 3.8327 31 1 3.4512 -2.2774 5.1323 32 1 4.2387 -3.1506 7.2945 33 1 4.3649 -1.6653 9.2525 34 1 3.6999 0.6963 9.0558 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194722979.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:19 Heat of formation + Delta-G solvation = -94.644782 kcal Electronic energy + Delta-G solvation = -19403.634529 eV Core-core repulsion = 16023.533344 eV Total energy + Delta-G solvation = -3380.101185 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.78574 -40.26515 -38.81122 -37.31995 -34.82387 -32.48939 -30.92879 -30.55002 -29.41128 -27.39907 -25.29376 -23.16100 -22.61810 -21.17208 -19.57983 -18.62273 -17.54647 -17.11332 -16.49290 -16.44017 -15.61854 -15.38104 -15.33334 -15.00926 -14.57192 -14.31784 -13.81837 -13.49586 -12.99237 -12.71144 -12.48947 -12.37243 -11.89363 -11.74584 -11.37395 -11.24162 -11.13530 -10.95548 -10.76363 -10.36684 -10.27654 -9.17553 -9.14261 -9.09381 -8.60593 -8.35956 -8.02236 -6.16212 -4.26341 0.89890 1.05173 2.73194 3.19074 3.22105 3.29043 3.31032 3.36410 3.99456 4.17455 4.33523 4.52956 4.61014 4.84442 4.98358 5.05301 5.12751 5.16636 5.22968 5.37827 5.74674 5.82058 5.94256 6.13174 6.42732 6.77598 6.91468 7.09020 7.13850 7.36092 7.49753 7.63634 7.85736 8.09793 8.53651 8.71494 8.99331 9.41059 10.89815 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.040576 B = 0.003519 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.892465 B = 7954.757792 C = 8400.412287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.266 3.734 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.704 5.704 13 C 0.502 3.498 14 O -0.529 6.529 15 C 0.038 3.962 16 O -0.279 6.279 17 C 0.103 3.897 18 C -0.187 4.187 19 C -0.090 4.090 20 C -0.135 4.135 21 C -0.117 4.117 22 C 0.069 3.931 23 F -0.129 7.129 24 H 0.015 0.985 25 H 0.092 0.908 26 H 0.027 0.973 27 H 0.265 0.735 28 H 0.390 0.610 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.139 0.861 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.679 -8.277 18.458 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.354 5.354 13 C 0.285 3.715 14 O -0.405 6.405 15 C -0.041 4.041 16 O -0.190 6.190 17 C 0.055 3.945 18 C -0.206 4.206 19 C -0.108 4.108 20 C -0.154 4.154 21 C -0.136 4.136 22 C 0.049 3.951 23 F -0.108 7.108 24 H 0.035 0.965 25 H 0.110 0.890 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.222 0.778 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.157 0.843 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.289 -7.021 18.248 20.255 hybrid contribution 0.378 -0.980 -0.954 1.419 sum 5.667 -8.001 17.294 19.880 Atomic orbital electron populations 1.22095 0.98288 0.99222 1.01097 1.18807 0.91144 0.94076 0.79500 0.93172 1.21190 1.32715 1.13334 0.90209 0.91970 1.24895 0.94779 0.94927 0.99104 1.69896 1.35684 1.22355 1.24013 0.86419 0.79142 0.79254 0.82111 1.20516 1.21024 1.19830 1.46425 1.65422 1.13612 1.09937 1.19809 0.79820 0.87771 0.84110 1.90725 1.49647 1.15626 1.84549 1.22739 1.02750 0.92570 0.86045 1.86278 1.80060 1.37313 1.15368 1.19187 0.96734 0.92636 0.85921 1.21242 1.05390 0.93771 1.00152 1.21013 0.97739 1.00121 0.91902 1.20905 1.02330 0.92755 0.99382 1.21026 0.99999 0.96970 0.95628 1.17045 1.05930 0.79135 0.92962 1.91533 1.89511 1.33124 1.96610 0.96546 0.88979 0.95361 0.92465 0.77780 0.89188 0.89262 0.84283 0.85050 0.84959 0.84128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 2 C 0.27 6.72 2.56 -69.08 -0.18 6.54 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 4 C -0.54 -13.98 8.73 -34.44 -0.30 -14.28 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.74 11.32 55.43 0.63 -24.11 16 8 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 12 N -0.70 -14.23 5.07 -54.93 -0.28 -14.51 16 13 C 0.50 10.12 7.87 -10.98 -0.09 10.03 16 14 O -0.53 -13.39 16.16 -14.35 -0.23 -13.63 16 15 C 0.04 0.55 5.22 36.01 0.19 0.73 16 16 O -0.28 -4.74 9.53 -39.48 -0.38 -5.12 16 17 C 0.10 1.42 6.69 -39.18 -0.26 1.15 16 18 C -0.19 -1.91 9.04 -39.45 -0.36 -2.27 16 19 C -0.09 -0.73 10.04 -39.59 -0.40 -1.13 16 20 C -0.14 -1.08 10.04 -39.57 -0.40 -1.48 16 21 C -0.12 -1.15 10.02 -39.54 -0.40 -1.55 16 22 C 0.07 0.94 7.31 -39.29 -0.29 0.65 16 23 F -0.13 -2.05 17.11 2.25 0.04 -2.01 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.39 6.45 8.54 -40.82 -0.35 6.11 16 29 H 0.09 1.03 7.66 -51.93 -0.40 0.63 16 30 H 0.09 1.00 7.66 -51.93 -0.40 0.60 16 31 H 0.14 1.13 6.30 -52.49 -0.33 0.80 16 32 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 33 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 34 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 302.46 15.07 4.56 4.56 Total: -1.00 -32.92 302.46 -6.75 -39.67 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -3.84 Total: 3.09 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -2.22 Total: -3.26 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.35 Total: -38.62 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.61 Total: -18.75 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.92 -6.75 -39.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194722979.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.978 kcal (2) G-P(sol) polarization free energy of solvation -32.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds