Wall clock time and date at job start Mon Mar 30 2020 00:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47176 * 2 1 4 4 C 1.50697 * 109.47453 * 239.99486 * 2 1 3 5 5 H 1.08000 * 119.99889 * 240.00335 * 4 2 1 6 6 C 1.37876 * 119.99795 * 60.00184 * 4 2 1 7 7 N 1.31509 * 120.00453 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99951 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47438 * 89.99527 * 8 6 4 10 10 H 1.48499 * 109.46895 * 209.99782 * 8 6 4 11 11 H 1.48503 * 109.46640 * 329.99717 * 8 6 4 12 12 N 1.46504 * 109.46927 * 119.99475 * 2 1 3 13 13 C 1.34777 * 119.99646 * 274.99947 * 12 2 1 14 14 O 1.21276 * 120.00320 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99499 * 180.02562 * 13 12 2 16 16 O 1.42906 * 109.47037 * 180.02562 * 15 13 12 17 17 C 1.35948 * 117.00016 * 180.02562 * 16 15 13 18 18 C 1.38659 * 120.06296 * 359.97438 * 17 16 15 19 19 C 1.38182 * 119.96723 * 180.02562 * 18 17 16 20 20 C 1.38257 * 120.10006 * 359.97438 * 19 18 17 21 21 C 1.38255 * 120.12507 * 0.02562 * 20 19 18 22 22 C 1.38338 * 120.03035 * 359.97438 * 21 20 19 23 23 F 1.35094 * 120.05046 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.47411 * 300.00171 * 1 2 3 25 25 H 1.08996 * 109.46843 * 60.00842 * 1 2 3 26 26 H 1.09005 * 109.46798 * 180.02562 * 1 2 3 27 27 H 0.96992 * 120.00441 * 180.02562 * 7 6 4 28 28 H 0.96999 * 119.99848 * 95.00423 * 12 2 1 29 29 H 1.08994 * 109.47324 * 60.00587 * 15 13 12 30 30 H 1.08998 * 109.47294 * 300.00127 * 15 13 12 31 31 H 1.07992 * 120.01857 * 0.02562 * 18 17 16 32 32 H 1.08007 * 119.94945 * 180.02562 * 19 18 17 33 33 H 1.08001 * 119.94370 * 180.02562 * 20 19 18 34 34 H 1.07994 * 119.98956 * 179.72600 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2395 -2.4826 7 7 0.9429 0.8294 -2.6035 8 14 2.3215 -1.1206 -4.0078 9 1 1.3431 -2.1620 -4.4117 10 1 2.4867 -0.1417 -5.1122 11 1 3.6295 -1.7585 -3.7119 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0180 2.3572 14 8 1.8581 1.1586 2.4116 15 6 2.6498 -0.7282 3.5876 16 8 2.6972 0.1900 4.6816 17 6 3.1327 -0.2940 5.8751 18 6 3.5059 -1.6244 5.9907 19 6 3.9477 -2.1143 7.2048 20 6 4.0188 -1.2798 8.3048 21 6 3.6477 0.0474 8.1940 22 6 3.2046 0.5435 6.9811 23 9 2.8414 1.8401 6.8725 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7083 1.1605 -3.4845 28 1 2.2490 -1.6317 1.1528 29 1 3.6491 -1.1199 3.3981 30 1 1.9776 -1.5505 3.8327 31 1 3.4512 -2.2774 5.1323 32 1 4.2387 -3.1506 7.2945 33 1 4.3649 -1.6653 9.2525 34 1 3.6999 0.6963 9.0558 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194722979.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:19 Heat of formation + Delta-G solvation = -116.838153 kcal Electronic energy + Delta-G solvation = -19404.596906 eV Core-core repulsion = 16023.533344 eV Total energy + Delta-G solvation = -3381.063562 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.83450 -41.36017 -40.25492 -38.32664 -36.72785 -34.40771 -31.88408 -31.61586 -30.80782 -28.72573 -27.35356 -24.16468 -23.47184 -22.81191 -21.31970 -19.61982 -19.09506 -18.09044 -17.75635 -17.55931 -17.17208 -17.08200 -16.49906 -16.15595 -15.73855 -15.38274 -15.29736 -14.96535 -14.46603 -14.11854 -13.77302 -13.65031 -13.30706 -13.03440 -12.87963 -12.74069 -12.64971 -12.31501 -12.16823 -12.13611 -12.09488 -11.13312 -10.84454 -10.61046 -9.92817 -9.86395 -9.24020 -8.18659 -6.37099 0.14531 0.27290 1.45355 1.46863 1.56369 1.61706 1.62832 2.39651 2.62843 2.77349 3.12188 3.28264 3.66155 3.81907 3.98628 4.03372 4.09853 4.30666 4.36097 4.53396 4.71914 4.88714 5.00907 5.05531 5.11336 5.28196 5.38322 5.44323 5.55267 5.62774 5.70581 5.86435 6.06039 6.24348 6.70058 6.85414 7.29306 7.46162 8.88019 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.040576 B = 0.003519 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.892465 B = 7954.757792 C = 8400.412287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.270 3.730 3 H -0.004 1.004 4 C -0.547 4.547 5 H 0.080 0.920 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.977 3.023 9 H -0.270 1.270 10 H -0.289 1.289 11 H -0.261 1.261 12 N -0.694 5.694 13 C 0.495 3.505 14 O -0.592 6.592 15 C 0.051 3.949 16 O -0.324 6.324 17 C 0.070 3.930 18 C -0.185 4.185 19 C -0.080 4.080 20 C -0.124 4.124 21 C -0.116 4.116 22 C 0.024 3.976 23 F -0.158 7.158 24 H 0.008 0.992 25 H 0.067 0.933 26 H 0.046 0.954 27 H 0.266 0.734 28 H 0.412 0.588 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.163 0.837 32 H 0.171 0.829 33 H 0.171 0.829 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.302 -12.243 19.800 24.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.167 3.833 3 H 0.014 0.986 4 C -0.585 4.585 5 H 0.098 0.902 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.801 3.199 9 H -0.195 1.195 10 H -0.215 1.215 11 H -0.185 1.185 12 N -0.345 5.345 13 C 0.281 3.719 14 O -0.473 6.473 15 C -0.026 4.026 16 O -0.237 6.237 17 C 0.024 3.976 18 C -0.203 4.203 19 C -0.098 4.098 20 C -0.141 4.141 21 C -0.135 4.135 22 C 0.005 3.995 23 F -0.137 7.137 24 H 0.028 0.972 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.248 0.752 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.181 0.819 32 H 0.188 0.812 33 H 0.188 0.812 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 6.933 -11.051 19.624 23.565 hybrid contribution -0.090 0.229 -1.231 1.255 sum 6.844 -10.822 18.393 22.411 Atomic orbital electron populations 1.21920 0.98209 0.99782 0.99521 1.18397 0.91225 0.91957 0.81740 0.98623 1.21544 1.32759 1.13713 0.90441 0.90194 1.25862 0.94849 0.95551 1.02549 1.70062 1.37013 1.24034 1.24699 0.85276 0.79082 0.77924 0.77633 1.19513 1.21523 1.18499 1.46080 1.65086 1.14474 1.08885 1.20850 0.78296 0.87181 0.85542 1.90696 1.52211 1.18682 1.85692 1.22676 1.05261 0.91727 0.82980 1.86189 1.81428 1.39203 1.16918 1.19514 0.98950 0.94425 0.84724 1.21583 1.04433 0.92225 1.02056 1.21536 0.95599 1.01869 0.90774 1.21424 1.00141 0.91560 1.01023 1.21353 0.99047 0.98370 0.94705 1.17700 1.08539 0.78466 0.94827 1.91447 1.90202 1.35123 1.96881 0.97243 0.91422 0.93493 0.92528 0.75200 0.85510 0.85318 0.81910 0.81167 0.81204 0.82352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.93 9.26 71.98 0.67 -6.26 16 2 C 0.27 14.03 2.56 44.24 0.11 14.14 16 3 H 0.00 -0.26 7.58 -2.39 -0.02 -0.28 16 4 C -0.55 -28.39 8.73 25.60 0.22 -28.17 16 5 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 6 C 0.01 0.63 5.30 84.66 0.45 1.08 16 7 N -0.92 -52.99 11.32 21.45 0.24 -52.74 16 8 Si 0.98 41.31 29.54 68.60 2.03 43.34 16 9 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 10 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 12 N -0.69 -27.90 5.07 -446.10 -2.26 -30.16 16 13 C 0.50 20.23 7.87 87.66 0.69 20.92 16 14 O -0.59 -31.72 16.16 16.02 0.26 -31.47 16 15 C 0.05 1.40 5.22 71.24 0.37 1.77 16 16 O -0.32 -11.19 9.53 -73.93 -0.70 -11.90 16 17 C 0.07 1.88 6.69 22.53 0.15 2.04 16 18 C -0.18 -3.15 9.04 22.36 0.20 -2.95 16 19 C -0.08 -0.92 10.04 22.26 0.22 -0.70 16 20 C -0.12 -1.45 10.04 22.28 0.22 -1.22 16 21 C -0.12 -2.08 10.02 22.30 0.22 -1.86 16 22 C 0.02 0.67 7.31 22.46 0.16 0.83 16 23 F -0.16 -5.39 17.11 44.97 0.77 -4.62 16 24 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 26 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 27 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.41 12.78 8.54 -92.71 -0.79 11.99 16 29 H 0.13 2.49 7.66 -2.39 -0.02 2.47 16 30 H 0.13 2.46 7.66 -2.39 -0.02 2.44 16 31 H 0.16 1.87 6.30 -2.91 -0.02 1.85 16 32 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 33 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 34 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -78.20 302.46 4.37 -73.83 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 0.34 Total: 14.11 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 3.70 Total: -0.38 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -2.02 Total: -82.91 kcal Atomic # 8 Polarization: -42.92 SS G_CDS: -0.45 Total: -43.36 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.77 Total: -4.62 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -78.20 4.37 -73.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194722979.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.011 kcal (2) G-P(sol) polarization free energy of solvation -78.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds