Wall clock time and date at job start Mon Mar 30 2020 00:33:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09005 * 109.47057 * 2 1
4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3
5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1
6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1
7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2
8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2
9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4
10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4
11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4
12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3
13 13 C 1.34781 * 120.00067 * 275.00178 * 12 2 1
14 14 O 1.21281 * 119.99724 * 359.97438 * 13 12 2
15 15 C 1.50697 * 119.99965 * 179.97438 * 13 12 2
16 16 O 1.42893 * 109.47010 * 180.02562 * 15 13 12
17 17 C 1.35946 * 116.99958 * 180.02562 * 16 15 13
18 18 C 1.38708 * 120.03009 * 359.72346 * 17 16 15
19 19 C 1.38148 * 119.96893 * 179.79769 * 18 17 16
20 20 C 1.38459 * 120.03050 * 0.47730 * 19 18 17
21 21 F 1.35099 * 119.96948 * 179.72889 * 20 19 18
22 22 C 1.38448 * 120.05922 * 359.75495 * 20 19 18
23 23 C 1.38148 * 120.03136 * 0.02562 * 22 20 19
24 24 H 1.08997 * 109.46749 * 180.02562 * 1 2 3
25 25 H 1.08996 * 109.47024 * 300.00143 * 1 2 3
26 26 H 1.08998 * 109.46637 * 59.99843 * 1 2 3
27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4
28 28 H 0.97000 * 119.99972 * 95.00133 * 12 2 1
29 29 H 1.08996 * 109.47441 * 300.00678 * 15 13 12
30 30 H 1.09005 * 109.46714 * 60.00041 * 15 13 12
31 31 H 1.08001 * 120.01265 * 0.02562 * 18 17 16
32 32 H 1.07998 * 119.98569 * 180.21245 * 19 18 17
33 33 H 1.08006 * 119.98508 * 179.97438 * 22 20 19
34 34 H 1.08000 * 120.01640 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0325 -0.7104 -1.2303
5 1 2.6533 -1.5885 -1.1312
6 6 1.6994 -0.2394 -2.4827
7 7 2.1375 -0.8596 -3.5565
8 14 0.6260 1.2797 -2.6541
9 1 -0.8019 0.8744 -2.6994
10 1 0.8491 2.1773 -1.4922
11 1 0.9774 1.9953 -3.9070
12 7 2.0183 -0.6906 1.1963
13 6 2.1470 -0.0182 2.3572
14 8 1.8590 1.1587 2.4115
15 6 2.6488 -0.7287 3.5879
16 8 2.6964 0.1894 4.6818
17 6 3.1309 -0.2948 5.8754
18 6 3.4981 -1.6273 5.9918
19 6 3.9435 -2.1170 7.2044
20 6 4.0141 -1.2807 8.3056
21 9 4.4447 -1.7623 9.4922
22 6 3.6434 0.0483 8.1921
23 6 3.2019 0.5418 6.9796
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3633 0.5138 0.8899
26 1 -0.3632 0.5139 -0.8900
27 1 1.9028 -0.5285 -4.4375
28 1 2.2491 -1.6317 1.1527
29 1 1.9760 -1.5505 3.8327
30 1 3.6480 -1.1212 3.3987
31 1 3.4393 -2.2807 5.1339
32 1 4.2328 -3.1536 7.2944
33 1 3.6985 0.6995 9.0520
34 1 2.9123 1.5785 6.8914
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000194741857.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:33:22
Heat of formation + Delta-G solvation = -110.174615 kcal
Electronic energy + Delta-G solvation = -19193.694447 eV
Core-core repulsion = 15812.919838 eV
Total energy + Delta-G solvation = -3380.774609 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 267.106 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-49.81210 -41.41696 -40.33908 -38.15088 -36.80010 -34.44629 -32.46402 -32.07687
-30.65380 -28.77102 -27.21620 -24.33115 -23.52815 -22.73279 -21.36347 -19.50366
-19.20103 -18.38255 -18.03606 -17.45089 -17.22618 -17.11397 -16.50754 -16.13041
-15.64844 -15.50490 -15.13113 -14.87176 -14.62920 -14.26736 -14.13587 -13.97498
-13.71218 -13.41431 -13.31367 -13.10498 -12.78989 -12.15168 -11.93321 -11.88689
-11.62062 -11.29103 -10.88751 -10.80602 -10.18534 -9.95777 -9.14209 -8.38586
-6.44491 0.16212 0.18866 1.27663 1.36582 1.45276 1.60317 1.62844
2.26059 2.56244 2.76834 2.97986 3.33058 3.60842 3.80989 3.82546
4.03892 4.14428 4.19144 4.33380 4.45023 4.54084 4.59240 4.69954
4.91350 4.99118 5.11704 5.14206 5.21862 5.30507 5.40899 5.57976
5.68296 6.10636 6.29094 6.57315 6.79456 7.17767 7.37101 8.76363
Molecular weight = 267.11amu
Principal moments of inertia in cm(-1)
A = 0.054062 B = 0.003248 C = 0.003128
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 517.799712 B = 8619.700020 C = 8948.056817
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.242 3.758
3 H 0.022 0.978
4 C -0.533 4.533
5 H 0.062 0.938
6 C 0.031 3.969
7 N -0.932 5.932
8 Si 0.936 3.064
9 H -0.259 1.259
10 H -0.264 1.264
11 H -0.293 1.293
12 N -0.692 5.692
13 C 0.502 3.498
14 O -0.584 6.584
15 C 0.047 3.953
16 O -0.315 6.315
17 C 0.106 3.894
18 C -0.180 4.180
19 C -0.109 4.109
20 C 0.040 3.960
21 F -0.148 7.148
22 C -0.110 4.110
23 C -0.134 4.134
24 H 0.069 0.931
25 H 0.045 0.955
26 H 0.040 0.960
27 H 0.270 0.730
28 H 0.413 0.587
29 H 0.129 0.871
30 H 0.124 0.876
31 H 0.165 0.835
32 H 0.161 0.839
33 H 0.161 0.839
34 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.944 -3.789 21.758 22.171
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.138 3.862
3 H 0.040 0.960
4 C -0.571 4.571
5 H 0.081 0.919
6 C -0.169 4.169
7 N -0.571 5.571
8 Si 0.763 3.237
9 H -0.185 1.185
10 H -0.189 1.189
11 H -0.221 1.221
12 N -0.343 5.343
13 C 0.289 3.711
14 O -0.464 6.464
15 C -0.030 4.030
16 O -0.228 6.228
17 C 0.061 3.939
18 C -0.199 4.199
19 C -0.128 4.128
20 C 0.021 3.979
21 F -0.127 7.127
22 C -0.129 4.129
23 C -0.153 4.153
24 H 0.088 0.912
25 H 0.064 0.936
26 H 0.059 0.941
27 H 0.080 0.920
28 H 0.250 0.750
29 H 0.147 0.853
30 H 0.142 0.858
31 H 0.182 0.818
32 H 0.178 0.822
33 H 0.178 0.822
34 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges 1.694 -2.796 21.577 21.824
hybrid contribution -0.175 0.082 -0.546 0.579
sum 1.519 -2.715 21.031 21.260
Atomic orbital electron populations
1.22360 0.97707 1.01979 0.99466 1.18785 0.91295 0.93202 0.82954
0.96029 1.21245 1.32434 1.13718 0.89691 0.91939 1.25522 0.96804
0.99184 0.95435 1.69965 1.46600 1.41864 0.98674 0.86052 0.79928
0.80523 0.77158 1.18469 1.18862 1.22089 1.45835 1.65378 1.14641
1.08493 1.20754 0.78021 0.87138 0.85223 1.90687 1.51966 1.18100
1.85628 1.22638 1.05243 0.91934 0.83228 1.86152 1.81190 1.38711
1.16708 1.19364 0.95729 0.93410 0.85423 1.21427 1.04217 0.94239
0.99987 1.21211 0.99342 1.01335 0.90908 1.17824 1.04542 0.93609
0.81939 1.91474 1.87926 1.88606 1.44730 1.21135 0.98941 0.94173
0.98604 1.20480 1.03610 1.01034 0.90157 0.91165 0.93623 0.94120
0.92022 0.75033 0.85335 0.85842 0.81761 0.82171 0.82180 0.83768
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -6.58 8.97 71.98 0.65 -5.93 16
2 C 0.24 11.04 2.15 44.24 0.10 11.14 16
3 H 0.02 1.12 6.63 -2.38 -0.02 1.11 16
4 C -0.53 -27.91 9.31 25.60 0.24 -27.67 16
5 H 0.06 3.43 7.98 -2.91 -0.02 3.41 16
6 C 0.03 1.68 5.45 84.66 0.46 2.14 16
7 N -0.93 -54.64 13.96 21.45 0.30 -54.34 16
8 Si 0.94 43.88 24.37 68.60 1.67 45.55 16
9 H -0.26 -11.38 6.87 99.48 0.68 -10.70 16
10 H -0.26 -12.38 6.53 99.48 0.65 -11.73 16
11 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16
12 N -0.69 -24.69 5.07 -446.08 -2.26 -26.96 16
13 C 0.50 17.39 7.87 87.66 0.69 18.08 16
14 O -0.58 -26.30 16.16 16.01 0.26 -26.04 16
15 C 0.05 1.06 5.22 71.24 0.37 1.43 16
16 O -0.31 -8.55 9.67 -73.90 -0.71 -9.26 16
17 C 0.11 2.29 6.69 22.49 0.15 2.44 16
18 C -0.18 -2.91 9.04 22.36 0.20 -2.71 16
19 C -0.11 -1.68 10.02 22.30 0.22 -1.46 16
20 C 0.04 0.72 7.30 22.37 0.16 0.88 16
21 F -0.15 -2.86 17.27 44.97 0.78 -2.08 16
22 C -0.11 -1.86 10.02 22.30 0.22 -1.64 16
23 C -0.13 -2.66 9.98 22.36 0.22 -2.44 16
24 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16
25 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16
26 H 0.04 1.76 3.27 -2.39 -0.01 1.75 16
27 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16
28 H 0.41 11.93 8.54 -92.71 -0.79 11.13 16
29 H 0.13 1.92 7.65 -2.39 -0.02 1.90 16
30 H 0.12 2.01 7.67 -2.38 -0.02 1.99 16
31 H 0.16 1.74 6.30 -2.91 -0.02 1.72 16
32 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16
33 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16
34 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16
Total: -1.00 -70.34 295.83 3.98 -66.36
By element:
Atomic # 1 Polarization: 12.24 SS G_CDS: 0.27 Total: 12.50 kcal
Atomic # 6 Polarization: -9.41 SS G_CDS: 3.69 Total: -5.72 kcal
Atomic # 7 Polarization: -79.33 SS G_CDS: -1.96 Total: -81.30 kcal
Atomic # 8 Polarization: -34.85 SS G_CDS: -0.46 Total: -35.30 kcal
Atomic # 9 Polarization: -2.86 SS G_CDS: 0.78 Total: -2.08 kcal
Atomic # 14 Polarization: 43.88 SS G_CDS: 1.67 Total: 45.55 kcal
Total: -70.34 3.98 -66.36 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000194741857.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.818 kcal
(2) G-P(sol) polarization free energy of solvation -70.341 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.159 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.356 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.175 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds