Wall clock time and date at job start Mon Mar 30 2020 00:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.34781 * 120.00067 * 275.00178 * 12 2 1 14 14 O 1.21281 * 119.99724 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99965 * 179.97438 * 13 12 2 16 16 O 1.42893 * 109.47010 * 180.02562 * 15 13 12 17 17 C 1.35946 * 116.99958 * 180.02562 * 16 15 13 18 18 C 1.38708 * 120.03009 * 359.72346 * 17 16 15 19 19 C 1.38148 * 119.96893 * 179.79769 * 18 17 16 20 20 C 1.38459 * 120.03050 * 0.47730 * 19 18 17 21 21 F 1.35099 * 119.96948 * 179.72889 * 20 19 18 22 22 C 1.38448 * 120.05922 * 359.75495 * 20 19 18 23 23 C 1.38148 * 120.03136 * 0.02562 * 22 20 19 24 24 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 26 26 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.97000 * 119.99972 * 95.00133 * 12 2 1 29 29 H 1.08996 * 109.47441 * 300.00678 * 15 13 12 30 30 H 1.09005 * 109.46714 * 60.00041 * 15 13 12 31 31 H 1.08001 * 120.01265 * 0.02562 * 18 17 16 32 32 H 1.07998 * 119.98569 * 180.21245 * 19 18 17 33 33 H 1.08006 * 119.98508 * 179.97438 * 22 20 19 34 34 H 1.08000 * 120.01640 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3572 14 8 1.8590 1.1587 2.4115 15 6 2.6488 -0.7287 3.5879 16 8 2.6964 0.1894 4.6818 17 6 3.1309 -0.2948 5.8754 18 6 3.4981 -1.6273 5.9918 19 6 3.9435 -2.1170 7.2044 20 6 4.0141 -1.2807 8.3056 21 9 4.4447 -1.7623 9.4922 22 6 3.6434 0.0483 8.1921 23 6 3.2019 0.5418 6.9796 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 1.9028 -0.5285 -4.4375 28 1 2.2491 -1.6317 1.1527 29 1 1.9760 -1.5505 3.8327 30 1 3.6480 -1.1212 3.3987 31 1 3.4393 -2.2807 5.1339 32 1 4.2328 -3.1536 7.2944 33 1 3.6985 0.6995 9.0520 34 1 2.9123 1.5785 6.8914 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194741857.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:22 Heat of formation + Delta-G solvation = -110.174615 kcal Electronic energy + Delta-G solvation = -19193.694447 eV Core-core repulsion = 15812.919838 eV Total energy + Delta-G solvation = -3380.774609 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.81210 -41.41696 -40.33908 -38.15088 -36.80010 -34.44629 -32.46402 -32.07687 -30.65380 -28.77102 -27.21620 -24.33115 -23.52815 -22.73279 -21.36347 -19.50366 -19.20103 -18.38255 -18.03606 -17.45089 -17.22618 -17.11397 -16.50754 -16.13041 -15.64844 -15.50490 -15.13113 -14.87176 -14.62920 -14.26736 -14.13587 -13.97498 -13.71218 -13.41431 -13.31367 -13.10498 -12.78989 -12.15168 -11.93321 -11.88689 -11.62062 -11.29103 -10.88751 -10.80602 -10.18534 -9.95777 -9.14209 -8.38586 -6.44491 0.16212 0.18866 1.27663 1.36582 1.45276 1.60317 1.62844 2.26059 2.56244 2.76834 2.97986 3.33058 3.60842 3.80989 3.82546 4.03892 4.14428 4.19144 4.33380 4.45023 4.54084 4.59240 4.69954 4.91350 4.99118 5.11704 5.14206 5.21862 5.30507 5.40899 5.57976 5.68296 6.10636 6.29094 6.57315 6.79456 7.17767 7.37101 8.76363 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.054062 B = 0.003248 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.799712 B = 8619.700020 C = 8948.056817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.242 3.758 3 H 0.022 0.978 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.031 3.969 7 N -0.932 5.932 8 Si 0.936 3.064 9 H -0.259 1.259 10 H -0.264 1.264 11 H -0.293 1.293 12 N -0.692 5.692 13 C 0.502 3.498 14 O -0.584 6.584 15 C 0.047 3.953 16 O -0.315 6.315 17 C 0.106 3.894 18 C -0.180 4.180 19 C -0.109 4.109 20 C 0.040 3.960 21 F -0.148 7.148 22 C -0.110 4.110 23 C -0.134 4.134 24 H 0.069 0.931 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.270 0.730 28 H 0.413 0.587 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.165 0.835 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.944 -3.789 21.758 22.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.138 3.862 3 H 0.040 0.960 4 C -0.571 4.571 5 H 0.081 0.919 6 C -0.169 4.169 7 N -0.571 5.571 8 Si 0.763 3.237 9 H -0.185 1.185 10 H -0.189 1.189 11 H -0.221 1.221 12 N -0.343 5.343 13 C 0.289 3.711 14 O -0.464 6.464 15 C -0.030 4.030 16 O -0.228 6.228 17 C 0.061 3.939 18 C -0.199 4.199 19 C -0.128 4.128 20 C 0.021 3.979 21 F -0.127 7.127 22 C -0.129 4.129 23 C -0.153 4.153 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.250 0.750 29 H 0.147 0.853 30 H 0.142 0.858 31 H 0.182 0.818 32 H 0.178 0.822 33 H 0.178 0.822 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.694 -2.796 21.577 21.824 hybrid contribution -0.175 0.082 -0.546 0.579 sum 1.519 -2.715 21.031 21.260 Atomic orbital electron populations 1.22360 0.97707 1.01979 0.99466 1.18785 0.91295 0.93202 0.82954 0.96029 1.21245 1.32434 1.13718 0.89691 0.91939 1.25522 0.96804 0.99184 0.95435 1.69965 1.46600 1.41864 0.98674 0.86052 0.79928 0.80523 0.77158 1.18469 1.18862 1.22089 1.45835 1.65378 1.14641 1.08493 1.20754 0.78021 0.87138 0.85223 1.90687 1.51966 1.18100 1.85628 1.22638 1.05243 0.91934 0.83228 1.86152 1.81190 1.38711 1.16708 1.19364 0.95729 0.93410 0.85423 1.21427 1.04217 0.94239 0.99987 1.21211 0.99342 1.01335 0.90908 1.17824 1.04542 0.93609 0.81939 1.91474 1.87926 1.88606 1.44730 1.21135 0.98941 0.94173 0.98604 1.20480 1.03610 1.01034 0.90157 0.91165 0.93623 0.94120 0.92022 0.75033 0.85335 0.85842 0.81761 0.82171 0.82180 0.83768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.58 8.97 71.98 0.65 -5.93 16 2 C 0.24 11.04 2.15 44.24 0.10 11.14 16 3 H 0.02 1.12 6.63 -2.38 -0.02 1.11 16 4 C -0.53 -27.91 9.31 25.60 0.24 -27.67 16 5 H 0.06 3.43 7.98 -2.91 -0.02 3.41 16 6 C 0.03 1.68 5.45 84.66 0.46 2.14 16 7 N -0.93 -54.64 13.96 21.45 0.30 -54.34 16 8 Si 0.94 43.88 24.37 68.60 1.67 45.55 16 9 H -0.26 -11.38 6.87 99.48 0.68 -10.70 16 10 H -0.26 -12.38 6.53 99.48 0.65 -11.73 16 11 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 12 N -0.69 -24.69 5.07 -446.08 -2.26 -26.96 16 13 C 0.50 17.39 7.87 87.66 0.69 18.08 16 14 O -0.58 -26.30 16.16 16.01 0.26 -26.04 16 15 C 0.05 1.06 5.22 71.24 0.37 1.43 16 16 O -0.31 -8.55 9.67 -73.90 -0.71 -9.26 16 17 C 0.11 2.29 6.69 22.49 0.15 2.44 16 18 C -0.18 -2.91 9.04 22.36 0.20 -2.71 16 19 C -0.11 -1.68 10.02 22.30 0.22 -1.46 16 20 C 0.04 0.72 7.30 22.37 0.16 0.88 16 21 F -0.15 -2.86 17.27 44.97 0.78 -2.08 16 22 C -0.11 -1.86 10.02 22.30 0.22 -1.64 16 23 C -0.13 -2.66 9.98 22.36 0.22 -2.44 16 24 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 25 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.04 1.76 3.27 -2.39 -0.01 1.75 16 27 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 28 H 0.41 11.93 8.54 -92.71 -0.79 11.13 16 29 H 0.13 1.92 7.65 -2.39 -0.02 1.90 16 30 H 0.12 2.01 7.67 -2.38 -0.02 1.99 16 31 H 0.16 1.74 6.30 -2.91 -0.02 1.72 16 32 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -70.34 295.83 3.98 -66.36 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.27 Total: 12.50 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 3.69 Total: -5.72 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -1.96 Total: -81.30 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -0.46 Total: -35.30 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.78 Total: -2.08 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.67 Total: 45.55 kcal Total: -70.34 3.98 -66.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194741857.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.818 kcal (2) G-P(sol) polarization free energy of solvation -70.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds