Wall clock time and date at job start Mon Mar 30 2020 00:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35709 * 116.99765 * 2 1 4 4 C 1.39097 * 119.89179 * 0.02562 * 3 2 1 5 5 C 1.37609 * 120.16211 * 179.76853 * 4 3 2 6 6 C 1.39816 * 119.93148 * 0.46790 * 5 4 3 7 7 C 1.47456 * 120.10798 * 179.79185 * 6 5 4 8 8 O 1.21598 * 119.99846 * 179.72357 * 7 6 5 9 9 N 1.34778 * 120.00053 * 359.72102 * 7 6 5 10 10 C 1.46499 * 119.99771 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47391 * 34.99730 * 10 9 7 12 12 C 1.53002 * 109.46799 * 274.99826 * 10 9 7 13 13 C 1.50701 * 109.46992 * 154.99740 * 10 9 7 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 10 9 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 10 9 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 C 1.39984 * 119.78046 * 359.51087 * 6 5 4 22 22 F 1.35099 * 120.08144 * 180.27398 * 21 6 5 23 23 C 1.38059 * 119.83869 * 0.25876 * 21 6 5 24 24 H 1.08999 * 109.47436 * 180.02562 * 1 2 3 25 25 H 1.09010 * 109.47180 * 300.00458 * 1 2 3 26 26 H 1.09000 * 109.47421 * 59.99958 * 1 2 3 27 27 H 1.07995 * 119.92264 * 0.02562 * 4 3 2 28 28 H 1.08001 * 120.03425 * 180.25233 * 5 4 3 29 29 H 0.96998 * 119.99599 * 359.97438 * 9 7 6 30 30 H 1.09002 * 109.47075 * 299.99543 * 12 10 9 31 31 H 1.08996 * 109.47407 * 60.00500 * 12 10 9 32 32 H 1.09000 * 109.46986 * 180.02562 * 12 10 9 33 33 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 34 34 H 1.08001 * 119.97154 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2853 2.3743 0.0005 5 6 1.9041 3.6034 0.0053 6 6 3.3001 3.6815 -0.0002 7 6 3.9673 4.9965 0.0003 8 8 5.1815 5.0622 0.0006 9 7 3.2314 6.1256 0.0004 10 6 3.8943 7.4320 0.0003 11 1 4.8094 7.3751 -0.5892 12 6 4.2373 7.8299 1.4373 13 6 2.9732 8.4627 -0.6001 14 1 1.9920 8.1736 -0.9465 15 6 3.3828 9.7750 -0.7061 16 7 4.5774 10.1271 -0.2838 17 14 2.2408 11.0526 -1.4497 18 1 1.4108 11.6583 -0.3776 19 1 3.0457 12.1113 -2.1104 20 1 1.3580 10.4039 -2.4521 21 6 4.0622 2.5074 -0.0002 22 9 5.4115 2.5758 0.0000 23 6 3.4317 1.2792 -0.0002 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2070 2.3143 0.0014 28 1 1.3122 4.5067 0.0099 29 1 2.2628 6.0732 -0.0002 30 1 3.3222 7.8869 2.0269 31 1 4.9035 7.0845 1.8716 32 1 4.7302 8.8021 1.4374 33 1 4.8657 11.0502 -0.3587 34 1 4.0176 0.3719 -0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227421643.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:02 Heat of formation + Delta-G solvation = -94.354485 kcal Electronic energy + Delta-G solvation = -19792.246604 eV Core-core repulsion = 16412.158007 eV Total energy + Delta-G solvation = -3380.088597 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.70052 -40.36588 -38.93708 -36.94706 -34.78816 -32.52313 -31.26403 -30.27077 -28.70659 -27.52838 -25.25778 -23.68817 -22.70736 -21.06896 -19.55745 -18.72542 -17.70981 -16.99220 -16.16468 -16.08725 -15.83806 -15.37858 -15.14358 -14.78378 -14.65685 -14.10996 -13.88816 -13.28162 -12.91619 -12.61841 -12.56109 -12.34750 -12.31011 -11.70708 -11.22215 -11.18557 -11.09869 -10.92832 -10.71873 -10.32509 -10.23734 -9.12984 -9.04114 -9.02917 -8.56422 -8.45055 -7.89165 -6.12411 -4.22040 0.83055 1.04868 2.82669 3.09758 3.23956 3.30823 3.32882 3.98209 4.02640 4.31258 4.36295 4.47770 4.71109 4.80235 4.82643 5.07951 5.11155 5.18674 5.19722 5.31213 5.77498 5.88099 6.05755 6.08521 6.50064 6.83814 6.97950 7.02268 7.15517 7.44607 7.55410 7.68624 7.91559 8.14788 8.63043 8.76946 9.08975 9.45334 10.93646 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.027709 B = 0.004458 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.256577 B = 6279.642121 C = 7059.991754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.312 6.312 3 C 0.171 3.829 4 C -0.228 4.228 5 C -0.018 4.018 6 C -0.197 4.197 7 C 0.544 3.456 8 O -0.541 6.541 9 N -0.702 5.702 10 C 0.264 3.736 11 H 0.051 0.949 12 C -0.147 4.147 13 C -0.535 4.535 14 H 0.061 0.939 15 C 0.067 3.933 16 N -0.882 5.882 17 Si 0.902 3.098 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.196 3.804 22 F -0.108 7.108 23 C -0.204 4.204 24 H 0.102 0.898 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.138 0.862 28 H 0.142 0.858 29 H 0.387 0.613 30 H 0.026 0.974 31 H 0.015 0.985 32 H 0.091 0.909 33 H 0.265 0.735 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.208 -17.237 1.188 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.225 6.225 3 C 0.125 3.875 4 C -0.247 4.247 5 C -0.037 4.037 6 C -0.201 4.201 7 C 0.329 3.671 8 O -0.420 6.420 9 N -0.350 5.350 10 C 0.163 3.837 11 H 0.068 0.932 12 C -0.206 4.206 13 C -0.573 4.573 14 H 0.079 0.921 15 C -0.137 4.137 16 N -0.520 5.520 17 Si 0.730 3.270 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.199 1.199 21 C 0.175 3.825 22 F -0.086 7.086 23 C -0.224 4.224 24 H 0.120 0.880 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.156 0.844 28 H 0.160 0.840 29 H 0.220 0.780 30 H 0.045 0.955 31 H 0.035 0.965 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.066 -17.156 1.200 19.441 hybrid contribution -1.145 0.835 -0.358 1.461 sum -10.211 -16.321 0.842 19.271 Atomic orbital electron populations 1.23148 0.77746 1.04226 1.01873 1.86029 1.21895 1.26602 1.87944 1.18761 0.91329 0.84391 0.93025 1.21185 1.00551 0.91758 1.11227 1.21062 0.92542 0.97962 0.92160 1.20375 0.94146 0.94150 1.11478 1.17868 0.87270 0.83644 0.78323 1.90799 1.13192 1.87278 1.50699 1.46445 1.09482 1.07054 1.72021 1.18789 0.94082 0.76724 0.94123 0.93154 1.22082 0.98802 1.02433 0.97276 1.21200 1.01504 0.93016 1.41590 0.92076 1.24887 0.95293 0.98344 0.95155 1.69905 1.17995 1.18279 1.45799 0.86438 0.80411 0.80946 0.79233 1.20547 1.21046 1.19862 1.17263 0.77609 0.92141 0.95512 1.91613 1.27592 1.96976 1.92407 1.20154 0.92439 0.97498 1.12261 0.88012 0.92192 0.92170 0.84383 0.84024 0.78008 0.95455 0.96540 0.89060 0.92534 0.83527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.10 10.48 -18.83 -0.20 -3.30 16 3 C 0.17 1.97 6.69 -39.04 -0.26 1.71 16 4 C -0.23 -2.42 9.01 -39.49 -0.36 -2.78 16 5 C -0.02 -0.24 9.53 -39.22 -0.37 -0.61 16 6 C -0.20 -3.32 5.88 -104.90 -0.62 -3.93 16 7 C 0.54 11.67 7.73 -12.51 -0.10 11.58 16 8 O -0.54 -13.85 14.99 5.28 0.08 -13.77 16 9 N -0.70 -14.98 5.02 -56.00 -0.28 -15.26 16 10 C 0.26 6.83 2.56 -69.08 -0.18 6.65 16 11 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 12 C -0.15 -3.72 9.26 37.16 0.34 -3.38 16 13 C -0.53 -14.16 8.73 -34.44 -0.30 -14.46 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 16 N -0.88 -24.95 11.32 55.43 0.63 -24.32 16 17 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 C 0.20 3.17 7.28 -38.99 -0.28 2.89 16 22 F -0.11 -2.01 15.54 2.25 0.03 -1.97 16 23 C -0.20 -2.65 9.95 -39.43 -0.39 -3.04 16 24 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.29 7.65 -51.92 -0.40 -0.11 16 26 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 27 H 0.14 1.02 6.27 -52.49 -0.33 0.70 16 28 H 0.14 1.54 6.39 -52.49 -0.34 1.21 16 29 H 0.39 6.92 6.56 -40.82 -0.27 6.65 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 296.63 15.07 4.47 4.47 Total: -1.00 -32.43 296.63 -5.57 -38.00 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -3.67 Total: 3.19 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -1.62 Total: -2.54 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.35 Total: -39.58 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.12 Total: -17.07 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.03 Total: -1.97 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.43 -5.57 -38.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227421643.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.356 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds