Wall clock time and date at job start Mon Mar 30 2020 00:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35709 * 116.99765 * 2 1 4 4 C 1.39097 * 119.89179 * 0.02562 * 3 2 1 5 5 C 1.37609 * 120.16211 * 179.76853 * 4 3 2 6 6 C 1.39816 * 119.93148 * 0.46790 * 5 4 3 7 7 C 1.47456 * 120.10798 * 179.79185 * 6 5 4 8 8 O 1.21598 * 119.99846 * 179.72357 * 7 6 5 9 9 N 1.34778 * 120.00053 * 359.72102 * 7 6 5 10 10 C 1.46499 * 119.99771 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47391 * 34.99730 * 10 9 7 12 12 C 1.53002 * 109.46799 * 274.99826 * 10 9 7 13 13 C 1.50701 * 109.46992 * 154.99740 * 10 9 7 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 10 9 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 10 9 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 C 1.39984 * 119.78046 * 359.51087 * 6 5 4 22 22 F 1.35099 * 120.08144 * 180.27398 * 21 6 5 23 23 C 1.38059 * 119.83869 * 0.25876 * 21 6 5 24 24 H 1.08999 * 109.47436 * 180.02562 * 1 2 3 25 25 H 1.09010 * 109.47180 * 300.00458 * 1 2 3 26 26 H 1.09000 * 109.47421 * 59.99958 * 1 2 3 27 27 H 1.07995 * 119.92264 * 0.02562 * 4 3 2 28 28 H 1.08001 * 120.03425 * 180.25233 * 5 4 3 29 29 H 0.96998 * 119.99599 * 359.97438 * 9 7 6 30 30 H 1.09002 * 109.47075 * 299.99543 * 12 10 9 31 31 H 1.08996 * 109.47407 * 60.00500 * 12 10 9 32 32 H 1.09000 * 109.46986 * 180.02562 * 12 10 9 33 33 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 34 34 H 1.08001 * 119.97154 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2853 2.3743 0.0005 5 6 1.9041 3.6034 0.0053 6 6 3.3001 3.6815 -0.0002 7 6 3.9673 4.9965 0.0003 8 8 5.1815 5.0622 0.0006 9 7 3.2314 6.1256 0.0004 10 6 3.8943 7.4320 0.0003 11 1 4.8094 7.3751 -0.5892 12 6 4.2373 7.8299 1.4373 13 6 2.9732 8.4627 -0.6001 14 1 1.9920 8.1736 -0.9465 15 6 3.3828 9.7750 -0.7061 16 7 4.5774 10.1271 -0.2838 17 14 2.2408 11.0526 -1.4497 18 1 1.4108 11.6583 -0.3776 19 1 3.0457 12.1113 -2.1104 20 1 1.3580 10.4039 -2.4521 21 6 4.0622 2.5074 -0.0002 22 9 5.4115 2.5758 0.0000 23 6 3.4317 1.2792 -0.0002 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2070 2.3143 0.0014 28 1 1.3122 4.5067 0.0099 29 1 2.2628 6.0732 -0.0002 30 1 3.3222 7.8869 2.0269 31 1 4.9035 7.0845 1.8716 32 1 4.7302 8.8021 1.4374 33 1 4.8657 11.0502 -0.3587 34 1 4.0176 0.3719 -0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227421643.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:01 Heat of formation + Delta-G solvation = -116.893208 kcal Electronic energy + Delta-G solvation = -19793.223956 eV Core-core repulsion = 16412.158007 eV Total energy + Delta-G solvation = -3381.065949 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.99912 -41.36909 -40.42472 -38.03668 -36.73307 -34.41361 -32.47161 -31.48010 -30.32542 -28.22318 -27.34794 -24.90792 -23.90421 -22.63643 -21.31915 -19.81502 -19.15526 -18.12542 -17.69687 -17.15450 -17.05152 -16.86590 -16.45342 -16.27964 -15.74715 -15.70918 -15.41472 -14.72180 -14.37528 -13.98833 -13.78600 -13.59327 -13.34202 -13.16654 -12.99983 -12.87304 -12.72022 -12.29752 -12.13363 -12.02636 -11.96397 -11.11629 -10.88155 -10.59836 -10.06009 -9.88351 -9.38621 -8.17054 -6.35411 -0.30721 0.04680 1.46438 1.47846 1.58387 1.83031 2.06523 2.31960 2.54323 2.64648 3.13663 3.24482 3.56678 3.79510 3.85617 4.11827 4.19111 4.43673 4.48235 4.68771 4.79567 4.82026 4.88920 4.92703 5.02570 5.07176 5.08952 5.40966 5.46473 5.58132 5.66392 5.88658 6.07622 6.23422 6.71283 6.88527 7.30577 7.48283 8.89759 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.027709 B = 0.004458 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.256577 B = 6279.642121 C = 7059.991754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.319 6.319 3 C 0.187 3.813 4 C -0.210 4.210 5 C -0.008 4.008 6 C -0.227 4.227 7 C 0.540 3.460 8 O -0.596 6.596 9 N -0.694 5.694 10 C 0.270 3.730 11 H -0.003 1.003 12 C -0.134 4.134 13 C -0.547 4.547 14 H 0.078 0.922 15 C 0.013 3.987 16 N -0.919 5.919 17 Si 0.977 3.023 18 H -0.269 1.269 19 H -0.288 1.288 20 H -0.262 1.262 21 C 0.170 3.830 22 F -0.134 7.134 23 C -0.204 4.204 24 H 0.123 0.877 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.182 0.818 28 H 0.163 0.837 29 H 0.406 0.594 30 H 0.044 0.956 31 H 0.008 0.992 32 H 0.068 0.932 33 H 0.266 0.734 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.366 -18.573 0.930 23.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.231 6.231 3 C 0.140 3.860 4 C -0.228 4.228 5 C -0.027 4.027 6 C -0.231 4.231 7 C 0.328 3.672 8 O -0.479 6.479 9 N -0.344 5.344 10 C 0.166 3.834 11 H 0.015 0.985 12 C -0.193 4.193 13 C -0.585 4.585 14 H 0.096 0.904 15 C -0.187 4.187 16 N -0.557 5.557 17 Si 0.801 3.199 18 H -0.195 1.195 19 H -0.214 1.214 20 H -0.186 1.186 21 C 0.150 3.850 22 F -0.112 7.112 23 C -0.223 4.223 24 H 0.141 0.859 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.199 0.801 28 H 0.180 0.820 29 H 0.242 0.758 30 H 0.063 0.937 31 H 0.027 0.973 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -13.288 -18.533 0.946 22.824 hybrid contribution 0.054 1.054 -0.272 1.090 sum -13.234 -17.479 0.674 21.934 Atomic orbital electron populations 1.23576 0.75129 1.06346 1.03300 1.86054 1.24495 1.25527 1.87047 1.18849 0.90831 0.85559 0.90801 1.21571 1.02520 0.90116 1.08609 1.21274 0.90581 0.99964 0.90894 1.20045 0.95888 0.91391 1.15803 1.18579 0.86771 0.85211 0.76630 1.90757 1.15764 1.88253 1.53092 1.46122 1.10354 1.05727 1.72187 1.18406 0.92592 0.78971 0.93398 0.98545 1.21907 0.99100 1.00851 0.97410 1.21530 1.02064 0.93268 1.41621 0.90386 1.25854 0.96760 1.00653 0.95427 1.70069 1.20009 1.18759 1.46913 0.85273 0.78219 0.77781 0.78618 1.19452 1.21440 1.18568 1.17604 0.76738 0.93375 0.97310 1.91541 1.29562 1.97173 1.92928 1.20252 0.93664 0.96573 1.11832 0.85864 0.90647 0.90693 0.80073 0.81969 0.75759 0.93691 0.97305 0.91292 0.92527 0.82163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.81 113.37 1.11 1.18 16 2 O -0.32 -5.00 10.48 -90.30 -0.95 -5.95 16 3 C 0.19 3.66 6.69 22.62 0.15 3.81 16 4 C -0.21 -3.51 9.01 22.33 0.20 -3.31 16 5 C -0.01 -0.19 9.53 22.50 0.21 0.02 16 6 C -0.23 -7.65 5.88 -20.04 -0.12 -7.76 16 7 C 0.54 24.10 7.73 86.67 0.67 24.77 16 8 O -0.60 -32.69 14.99 -4.02 -0.06 -32.75 16 9 N -0.69 -30.11 5.02 -449.34 -2.26 -32.36 16 10 C 0.27 14.43 2.56 44.25 0.11 14.54 16 11 H 0.00 -0.21 7.58 -2.39 -0.02 -0.23 16 12 C -0.13 -7.01 9.26 71.98 0.67 -6.34 16 13 C -0.55 -28.98 8.73 25.60 0.22 -28.76 16 14 H 0.08 3.78 7.74 -2.91 -0.02 3.75 16 15 C 0.01 0.70 5.30 84.66 0.45 1.15 16 16 N -0.92 -53.33 11.32 21.45 0.24 -53.09 16 17 Si 0.98 41.64 29.54 68.60 2.03 43.67 16 18 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 19 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 21 C 0.17 5.63 7.28 22.65 0.16 5.79 16 22 F -0.13 -5.31 15.54 44.97 0.70 -4.61 16 23 C -0.20 -5.03 9.95 22.37 0.22 -4.80 16 24 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 25 H 0.07 0.30 7.65 -2.38 -0.02 0.29 16 26 H 0.07 0.31 7.65 -2.39 -0.02 0.29 16 27 H 0.18 1.49 6.27 -2.91 -0.02 1.47 16 28 H 0.16 2.95 6.39 -2.91 -0.02 2.94 16 29 H 0.41 14.07 6.56 -92.71 -0.61 13.46 16 30 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 3.92 6.07 -2.39 -0.01 3.90 16 33 H 0.27 14.55 8.31 -92.71 -0.77 13.77 16 34 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -75.11 296.63 4.31 -70.80 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.53 Total: 14.02 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 4.07 Total: 0.28 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -2.01 Total: -85.45 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -1.01 Total: -38.70 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.70 Total: -4.61 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -75.11 4.31 -70.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227421643.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.094 kcal (2) G-P(sol) polarization free energy of solvation -75.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds