Wall clock time and date at job start Mon Mar 30 2020 00:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35711 * 117.00083 * 2 1 4 4 C 1.39095 * 119.88658 * 0.02562 * 3 2 1 5 5 C 1.37611 * 120.15660 * 179.76731 * 4 3 2 6 6 C 1.39806 * 119.93659 * 0.46548 * 5 4 3 7 7 C 1.47452 * 120.11480 * 179.78974 * 6 5 4 8 8 O 1.21603 * 120.00270 * 179.72473 * 7 6 5 9 9 N 1.34777 * 119.99473 * 359.72163 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72398 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.50700 * 109.47208 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99770 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99720 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00513 * 0.02562 * 14 12 11 16 16 Si 1.86809 * 119.99651 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47037 * 59.99882 * 16 14 12 18 18 H 1.48501 * 109.46667 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47133 * 299.99829 * 16 14 12 20 20 C 1.39990 * 119.77984 * 359.51485 * 6 5 4 21 21 F 1.35102 * 120.08629 * 180.27262 * 20 6 5 22 22 C 1.38062 * 119.83594 * 0.25414 * 20 6 5 23 23 H 1.09004 * 109.47402 * 59.99851 * 1 2 3 24 24 H 1.08997 * 109.47641 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47451 * 300.00440 * 1 2 3 26 26 H 1.08000 * 119.92497 * 0.02562 * 4 3 2 27 27 H 1.08003 * 120.02982 * 180.23381 * 5 4 3 28 28 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 29 29 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 30 30 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 31 31 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 32 32 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 33 33 H 0.96999 * 120.00239 * 180.02562 * 15 14 12 34 34 H 1.07998 * 119.96622 * 179.97438 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2853 2.3742 0.0005 5 6 1.9042 3.6033 0.0054 6 6 3.3001 3.6815 -0.0001 7 6 3.9674 4.9964 0.0004 8 8 5.1816 5.0620 0.0007 9 7 3.2314 6.1255 0.0004 10 6 3.8944 7.4319 0.0070 11 6 2.8388 8.5394 0.0126 12 6 3.5207 9.8833 0.0187 13 1 4.5992 9.9416 0.0191 14 6 2.7678 11.0383 0.0239 15 7 1.4546 10.9674 0.0240 16 14 3.6132 12.7042 0.0322 17 1 4.4619 12.8346 -1.1792 18 1 2.5886 13.7791 0.0376 19 1 4.4609 12.8230 1.2457 20 6 4.0623 2.5073 -0.0002 21 9 5.4116 2.5757 0.0001 22 6 3.4317 1.2791 -0.0002 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 0.2069 2.3142 0.0014 27 1 1.3122 4.5066 0.0096 28 1 2.2628 6.0731 0.0005 29 1 4.5170 7.5189 0.8975 30 1 4.5170 7.5279 -0.8825 31 1 2.2162 8.4524 -0.8778 32 1 2.2161 8.4435 0.9022 33 1 0.9250 11.7800 0.0273 34 1 4.0176 0.3719 -0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230075015.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:42 Heat of formation + Delta-G solvation = -101.214066 kcal Electronic energy + Delta-G solvation = -19229.997497 eV Core-core repulsion = 15849.611447 eV Total energy + Delta-G solvation = -3380.386050 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.89452 -40.52898 -39.24202 -37.13106 -34.89809 -32.92379 -31.53654 -30.50819 -29.35250 -27.76387 -24.98013 -23.65712 -22.63747 -21.03653 -20.34199 -18.83462 -17.53095 -17.12429 -16.38128 -16.29195 -16.17056 -15.58626 -15.11653 -14.99393 -14.71616 -14.58689 -14.40323 -13.48460 -13.12115 -13.08378 -12.72023 -12.62393 -12.47798 -12.28762 -11.39158 -11.30303 -11.20225 -11.01753 -10.66677 -10.33867 -9.85858 -9.50417 -9.24505 -9.18969 -8.70814 -8.49937 -8.32781 -6.10493 -4.13249 0.62936 0.88946 2.70398 2.85501 3.31178 3.34728 3.37689 3.57706 3.70116 4.12652 4.33047 4.41087 4.56866 4.70287 4.75003 4.83612 4.95061 5.06933 5.10093 5.26685 5.58280 5.71497 5.84214 5.90723 6.29400 6.34166 6.37336 6.72470 6.86619 6.89072 7.49409 7.59604 7.87491 7.95431 8.26311 8.59721 8.92381 9.51639 11.01108 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032282 B = 0.003502 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.135277 B = 7993.751984 C = 8835.125062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.311 6.311 3 C 0.177 3.823 4 C -0.228 4.228 5 C -0.016 4.016 6 C -0.204 4.204 7 C 0.550 3.450 8 O -0.537 6.537 9 N -0.716 5.716 10 C 0.122 3.878 11 C 0.013 3.987 12 C -0.522 4.522 13 H 0.059 0.941 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.898 3.102 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.199 3.801 21 F -0.108 7.108 22 C -0.204 4.204 23 H 0.061 0.939 24 H 0.103 0.897 25 H 0.061 0.939 26 H 0.141 0.859 27 H 0.143 0.857 28 H 0.395 0.605 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.263 0.737 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.239 -21.472 -0.048 22.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.223 6.223 3 C 0.130 3.870 4 C -0.246 4.246 5 C -0.035 4.035 6 C -0.208 4.208 7 C 0.336 3.664 8 O -0.415 6.415 9 N -0.366 5.366 10 C 0.000 4.000 11 C -0.025 4.025 12 C -0.561 4.561 13 H 0.078 0.922 14 C -0.142 4.142 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C 0.178 3.822 21 F -0.086 7.086 22 C -0.223 4.223 23 H 0.079 0.921 24 H 0.121 0.879 25 H 0.079 0.921 26 H 0.159 0.841 27 H 0.161 0.839 28 H 0.230 0.770 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.390 -21.460 -0.048 21.904 hybrid contribution -0.226 1.065 0.007 1.088 sum -4.616 -20.395 -0.041 20.911 Atomic orbital electron populations 1.23179 0.77518 1.04411 1.01980 1.86039 1.22078 1.26486 1.87715 1.18797 0.91339 0.84493 0.92347 1.21220 1.00769 0.91683 1.10962 1.21064 0.92382 0.98138 0.91880 1.20159 0.94173 0.93572 1.12891 1.17890 0.87090 0.83693 0.77709 1.90818 1.13191 1.87392 1.50138 1.46221 1.10129 1.06621 1.73666 1.21772 0.97195 0.80007 1.01048 1.19328 0.93611 0.91688 0.97843 1.21016 0.93277 0.90347 1.51454 0.92240 1.24989 0.94844 0.99460 0.94942 1.69939 1.04411 1.28682 1.50341 0.86564 0.79114 0.83001 0.78819 1.20086 1.21243 1.20092 1.17238 0.77548 0.92121 0.95321 1.91617 1.27598 1.96977 1.92395 1.20170 0.92481 0.97539 1.12152 0.92069 0.87871 0.92063 0.84135 0.83915 0.76996 0.92332 0.92320 0.95904 0.95911 0.92784 0.83355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.74 10.48 -18.84 -0.20 -2.94 16 3 C 0.18 1.79 6.69 -39.04 -0.26 1.53 16 4 C -0.23 -2.09 9.01 -39.49 -0.36 -2.44 16 5 C -0.02 -0.17 9.53 -39.22 -0.37 -0.55 16 6 C -0.20 -2.96 5.88 -104.90 -0.62 -3.58 16 7 C 0.55 10.09 7.76 -12.51 -0.10 10.00 16 8 O -0.54 -11.91 15.33 5.27 0.08 -11.83 16 9 N -0.72 -12.78 5.51 -61.37 -0.34 -13.12 16 10 C 0.12 2.62 5.61 -4.04 -0.02 2.59 16 11 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 12 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -25.94 13.29 55.43 0.74 -25.21 16 16 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 C 0.20 2.83 7.28 -38.99 -0.28 2.54 16 21 F -0.11 -1.78 15.54 2.25 0.03 -1.75 16 22 C -0.20 -2.32 9.95 -39.43 -0.39 -2.72 16 23 H 0.06 0.24 7.65 -51.93 -0.40 -0.15 16 24 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 26 H 0.14 0.88 6.27 -52.49 -0.33 0.55 16 27 H 0.14 1.29 6.39 -52.48 -0.34 0.96 16 28 H 0.40 5.90 6.49 -40.82 -0.27 5.63 16 29 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 301.45 15.07 4.54 4.54 Total: -1.00 -33.16 301.45 -5.93 -39.09 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -3.80 Total: -0.57 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.97 Total: -4.56 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.40 Total: -38.32 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.12 Total: -14.77 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.03 Total: -1.75 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.16 -5.93 -39.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230075015.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.120 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds