Wall clock time and date at job start Mon Mar 30 2020 00:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35711 * 117.00083 * 2 1 4 4 C 1.39095 * 119.88658 * 0.02562 * 3 2 1 5 5 C 1.37611 * 120.15660 * 179.76731 * 4 3 2 6 6 C 1.39806 * 119.93659 * 0.46548 * 5 4 3 7 7 C 1.47452 * 120.11480 * 179.78974 * 6 5 4 8 8 O 1.21603 * 120.00270 * 179.72473 * 7 6 5 9 9 N 1.34777 * 119.99473 * 359.72163 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72398 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.50700 * 109.47208 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99770 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99720 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00513 * 0.02562 * 14 12 11 16 16 Si 1.86809 * 119.99651 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47037 * 59.99882 * 16 14 12 18 18 H 1.48501 * 109.46667 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47133 * 299.99829 * 16 14 12 20 20 C 1.39990 * 119.77984 * 359.51485 * 6 5 4 21 21 F 1.35102 * 120.08629 * 180.27262 * 20 6 5 22 22 C 1.38062 * 119.83594 * 0.25414 * 20 6 5 23 23 H 1.09004 * 109.47402 * 59.99851 * 1 2 3 24 24 H 1.08997 * 109.47641 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47451 * 300.00440 * 1 2 3 26 26 H 1.08000 * 119.92497 * 0.02562 * 4 3 2 27 27 H 1.08003 * 120.02982 * 180.23381 * 5 4 3 28 28 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 29 29 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 30 30 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 31 31 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 32 32 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 33 33 H 0.96999 * 120.00239 * 180.02562 * 15 14 12 34 34 H 1.07998 * 119.96622 * 179.97438 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2853 2.3742 0.0005 5 6 1.9042 3.6033 0.0054 6 6 3.3001 3.6815 -0.0001 7 6 3.9674 4.9964 0.0004 8 8 5.1816 5.0620 0.0007 9 7 3.2314 6.1255 0.0004 10 6 3.8944 7.4319 0.0070 11 6 2.8388 8.5394 0.0126 12 6 3.5207 9.8833 0.0187 13 1 4.5992 9.9416 0.0191 14 6 2.7678 11.0383 0.0239 15 7 1.4546 10.9674 0.0240 16 14 3.6132 12.7042 0.0322 17 1 4.4619 12.8346 -1.1792 18 1 2.5886 13.7791 0.0376 19 1 4.4609 12.8230 1.2457 20 6 4.0623 2.5073 -0.0002 21 9 5.4116 2.5757 0.0001 22 6 3.4317 1.2791 -0.0002 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 0.2069 2.3142 0.0014 27 1 1.3122 4.5066 0.0096 28 1 2.2628 6.0731 0.0005 29 1 4.5170 7.5189 0.8975 30 1 4.5170 7.5279 -0.8825 31 1 2.2162 8.4524 -0.8778 32 1 2.2161 8.4435 0.9022 33 1 0.9250 11.7800 0.0273 34 1 4.0176 0.3719 -0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230075015.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:42 Heat of formation + Delta-G solvation = -123.848942 kcal Electronic energy + Delta-G solvation = -19230.979019 eV Core-core repulsion = 15849.611447 eV Total energy + Delta-G solvation = -3381.367572 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.02995 -41.42480 -40.50653 -38.05900 -36.64552 -34.87019 -32.64843 -31.63880 -30.84373 -28.35531 -26.79239 -24.71783 -23.75407 -22.75200 -21.69094 -19.68892 -18.83735 -18.39920 -18.04371 -17.12127 -17.10831 -16.55749 -16.55498 -16.48505 -16.23829 -15.81890 -15.64102 -14.83943 -14.62025 -14.29068 -14.02569 -13.66626 -13.36757 -13.24704 -13.17211 -12.93419 -12.55027 -12.26008 -12.05595 -11.99342 -11.69571 -11.48421 -10.99261 -10.59874 -10.13423 -10.08451 -9.44715 -8.23929 -6.34025 -0.36577 0.02046 1.42369 1.44396 1.52341 1.71069 2.03174 2.15985 2.43972 2.57117 3.10887 3.19549 3.53551 3.64981 3.82266 4.08514 4.15827 4.40911 4.45440 4.46540 4.47503 4.75597 4.79742 4.83807 4.87599 4.98542 5.06002 5.23443 5.42905 5.47669 5.57932 5.78005 6.16093 6.20645 6.53380 6.78186 7.17276 7.35007 8.87639 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032282 B = 0.003502 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.135277 B = 7993.751984 C = 8835.125062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.319 6.319 3 C 0.189 3.811 4 C -0.212 4.212 5 C -0.008 4.008 6 C -0.229 4.229 7 C 0.549 3.451 8 O -0.584 6.584 9 N -0.708 5.708 10 C 0.140 3.860 11 C 0.024 3.976 12 C -0.550 4.550 13 H 0.057 0.943 14 C 0.010 3.990 15 N -0.924 5.924 16 Si 0.963 3.037 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.270 1.270 20 C 0.175 3.825 21 F -0.131 7.131 22 C -0.204 4.204 23 H 0.074 0.926 24 H 0.123 0.877 25 H 0.075 0.925 26 H 0.180 0.820 27 H 0.163 0.837 28 H 0.411 0.589 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.012 0.988 32 H 0.012 0.988 33 H 0.266 0.734 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.175 -22.478 -0.046 23.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.231 6.231 3 C 0.141 3.859 4 C -0.231 4.231 5 C -0.027 4.027 6 C -0.233 4.233 7 C 0.338 3.662 8 O -0.466 6.466 9 N -0.359 5.359 10 C 0.017 3.983 11 C -0.013 4.013 12 C -0.588 4.588 13 H 0.075 0.925 14 C -0.189 4.189 15 N -0.564 5.564 16 Si 0.788 3.212 17 H -0.195 1.195 18 H -0.204 1.204 19 H -0.195 1.195 20 C 0.155 3.845 21 F -0.109 7.109 22 C -0.224 4.224 23 H 0.093 0.907 24 H 0.141 0.859 25 H 0.093 0.907 26 H 0.197 0.803 27 H 0.180 0.820 28 H 0.248 0.752 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.031 0.969 33 H 0.075 0.925 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.369 -22.494 -0.046 23.378 hybrid contribution 0.232 1.206 0.006 1.228 sum -6.137 -21.288 -0.040 22.155 Atomic orbital electron populations 1.23575 0.75123 1.06372 1.03287 1.86057 1.24480 1.25613 1.86940 1.18891 0.90947 0.85521 0.90512 1.21581 1.02548 0.90283 1.08659 1.21278 0.90745 0.99903 0.90748 1.19914 0.95664 0.91268 1.16491 1.18460 0.86621 0.84899 0.76211 1.90782 1.15345 1.88171 1.52341 1.45967 1.10885 1.05375 1.73712 1.21286 0.96086 0.81040 0.99931 1.19131 0.93726 0.91820 0.96645 1.21435 0.93539 0.92036 1.51798 0.92469 1.25828 0.95518 1.03224 0.94363 1.70033 1.05642 1.29857 1.50836 0.85527 0.78225 0.78411 0.79061 1.19455 1.20433 1.19471 1.17541 0.76768 0.93231 0.96984 1.91552 1.29352 1.97153 1.92874 1.20272 0.93548 0.96803 1.11750 0.90694 0.85864 0.90685 0.80318 0.81992 0.75160 0.93509 0.93496 0.96942 0.96944 0.92473 0.82101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.81 113.37 1.11 1.17 16 2 O -0.32 -4.50 10.48 -90.32 -0.95 -5.44 16 3 C 0.19 3.27 6.69 22.62 0.15 3.42 16 4 C -0.21 -3.11 9.01 22.33 0.20 -2.91 16 5 C -0.01 -0.16 9.53 22.50 0.21 0.05 16 6 C -0.23 -6.63 5.88 -20.05 -0.12 -6.75 16 7 C 0.55 20.68 7.76 86.67 0.67 21.35 16 8 O -0.58 -27.16 15.33 -4.04 -0.06 -27.22 16 9 N -0.71 -25.56 5.51 -466.33 -2.57 -28.13 16 10 C 0.14 6.18 5.61 86.38 0.48 6.67 16 11 C 0.02 1.22 5.09 29.85 0.15 1.37 16 12 C -0.55 -30.78 9.11 25.60 0.23 -30.55 16 13 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 14 C 0.01 0.54 5.46 84.65 0.46 1.01 16 15 N -0.92 -53.55 13.29 21.45 0.28 -53.27 16 16 Si 0.96 43.57 29.54 68.60 2.03 45.59 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 C 0.18 5.05 7.28 22.65 0.16 5.21 16 21 F -0.13 -4.56 15.54 44.97 0.70 -3.86 16 22 C -0.20 -4.42 9.95 22.37 0.22 -4.20 16 23 H 0.07 0.24 7.65 -2.39 -0.02 0.22 16 24 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 25 H 0.07 0.24 7.65 -2.38 -0.02 0.22 16 26 H 0.18 1.25 6.27 -2.91 -0.02 1.23 16 27 H 0.16 2.48 6.39 -2.91 -0.02 2.46 16 28 H 0.41 12.03 6.49 -92.71 -0.60 11.43 16 29 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 34 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -73.14 301.45 3.92 -69.22 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 0.53 Total: 7.27 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 3.95 Total: -4.16 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -2.28 Total: -81.40 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -1.01 Total: -32.67 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.70 Total: -3.86 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -73.14 3.92 -69.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230075015.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.630 kcal (2) G-P(sol) polarization free energy of solvation -73.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds