Wall clock time and date at job start Mon Mar 30 2020 00:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00040 * 2 1 4 4 C 1.50696 * 109.47399 * 66.04221 * 3 2 1 5 5 H 1.08005 * 119.99725 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00189 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99750 * 180.02562 * 6 4 3 8 8 Si 1.86794 * 119.99818 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.46963 * 90.00024 * 8 6 4 10 10 H 1.48502 * 109.47084 * 209.99996 * 8 6 4 11 11 H 1.48500 * 109.47321 * 330.00380 * 8 6 4 12 12 C 1.46899 * 111.00255 * 236.04264 * 2 1 3 13 13 C 1.50703 * 109.47107 * 293.95458 * 12 2 1 14 14 C 1.37837 * 119.93760 * 104.72794 * 13 12 2 15 15 C 1.39693 * 119.87109 * 179.73076 * 14 13 12 16 16 C 1.47592 * 120.11995 * 180.26627 * 15 14 13 17 17 O 1.21489 * 120.00178 * 0.27089 * 16 15 14 18 18 O 1.34732 * 120.00048 * 180.27477 * 16 15 14 19 19 C 1.39724 * 119.75656 * 0.53975 * 15 14 13 20 20 C 1.37802 * 119.86900 * 359.73017 * 19 15 14 21 21 C 1.38653 * 119.93564 * 284.99645 * 13 12 2 22 22 F 1.35098 * 119.87369 * 0.02562 * 21 13 12 23 23 H 1.09005 * 109.46528 * 183.95480 * 1 2 3 24 24 H 1.09000 * 109.46785 * 303.95569 * 1 2 3 25 25 H 1.08997 * 109.47044 * 63.96124 * 1 2 3 26 26 H 1.08998 * 109.47407 * 186.04713 * 3 2 1 27 27 H 1.09007 * 109.46608 * 306.04149 * 3 2 1 28 28 H 0.97008 * 119.99731 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47043 * 53.95437 * 12 2 1 30 30 H 1.09001 * 109.47354 * 173.95499 * 12 2 1 31 31 H 1.07996 * 120.06504 * 359.97438 * 14 13 12 32 32 H 0.96705 * 117.00320 * 180.02562 * 18 16 15 33 33 H 1.07995 * 120.06598 * 179.71283 * 19 15 14 34 34 H 1.08001 * 119.93310 * 179.97438 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0487 6 6 2.0268 3.3496 1.5284 7 7 1.7142 3.9391 2.6617 8 14 3.0000 4.2761 0.2308 9 1 2.0634 4.9797 -0.6819 10 1 3.8863 5.2679 0.8912 11 1 3.8240 3.3174 -0.5484 12 6 1.9955 -0.7660 -1.1375 13 6 1.6370 -2.2205 -0.9727 14 6 0.6288 -2.7710 -1.7345 15 6 0.3014 -4.1208 -1.5846 16 6 -0.7733 -4.7174 -2.4016 17 8 -1.3716 -4.0356 -3.2097 18 8 -1.0908 -6.0181 -2.2511 19 6 0.9912 -4.9025 -0.6543 20 6 1.9936 -4.3401 0.1058 21 6 2.3183 -3.0009 -0.0511 22 9 3.3016 -2.4546 0.6970 23 1 -0.3632 -1.0253 0.0709 24 1 -0.3633 0.5740 0.8524 25 1 -0.3633 0.4511 -0.9233 26 1 3.0797 1.3445 -0.1083 27 1 1.5611 1.9273 -0.8310 28 1 1.9889 4.8553 2.8236 29 1 1.5612 -0.3873 -2.0628 30 1 3.0798 -0.6612 -1.1755 31 1 0.0956 -2.1611 -2.4486 32 1 -1.8012 -6.3639 -2.8087 33 1 0.7390 -5.9453 -0.5310 34 1 2.5271 -4.9433 0.8255 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231027899.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:46 Heat of formation + Delta-G solvation = -102.860711 kcal Electronic energy + Delta-G solvation = -19805.936712 eV Core-core repulsion = 16425.479258 eV Total energy + Delta-G solvation = -3380.457454 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.78860 -40.59074 -38.91402 -36.60827 -36.30679 -32.80330 -31.64241 -31.08131 -27.92103 -26.86180 -24.73177 -23.90454 -22.23008 -21.10685 -20.13342 -18.27382 -17.67062 -17.14318 -16.78472 -16.29994 -15.91111 -15.52471 -14.88271 -14.52136 -14.36880 -14.17340 -13.91334 -13.54702 -13.22529 -12.87077 -12.49972 -12.36399 -12.26529 -11.76941 -11.69305 -11.29054 -11.16035 -11.03242 -10.87777 -10.68634 -10.25035 -9.87220 -9.32040 -9.19301 -8.81018 -8.58286 -7.47552 -6.05641 -4.03183 0.42518 1.04660 2.28168 2.75435 3.27884 3.35680 3.37248 3.45163 4.16159 4.41391 4.46614 4.63343 4.77088 4.89286 4.95773 5.17727 5.27744 5.52704 5.64074 5.74878 5.91106 5.92853 5.99293 6.06374 6.13362 6.20812 6.26412 6.63302 6.66776 6.81000 6.94656 7.55404 7.64432 7.82280 7.96716 8.63268 9.02752 9.55537 11.07464 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.029960 B = 0.004474 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.367400 B = 6256.828240 C = 6683.296589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.524 5.524 3 C 0.162 3.838 4 C -0.509 4.509 5 H 0.081 0.919 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.088 3.912 13 C -0.116 4.116 14 C -0.020 4.020 15 C -0.151 4.151 16 C 0.531 3.469 17 O -0.514 6.514 18 O -0.514 6.514 19 C -0.036 4.036 20 C -0.175 4.175 21 C 0.168 3.832 22 F -0.116 7.116 23 H 0.046 0.954 24 H 0.082 0.918 25 H 0.014 0.986 26 H 0.030 0.970 27 H -0.014 1.014 28 H 0.264 0.736 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.144 0.856 32 H 0.414 0.586 33 H 0.145 0.855 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.640 -19.682 -9.580 21.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.248 5.248 3 C 0.036 3.964 4 C -0.547 4.547 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.703 3.297 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.192 1.192 12 C -0.041 4.041 13 C -0.117 4.117 14 C -0.039 4.039 15 C -0.152 4.152 16 C 0.376 3.624 17 O -0.404 6.404 18 O -0.326 6.326 19 C -0.055 4.055 20 C -0.194 4.194 21 C 0.148 3.852 22 F -0.094 7.094 23 H 0.065 0.935 24 H 0.101 0.899 25 H 0.033 0.967 26 H 0.048 0.952 27 H 0.004 0.996 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.162 0.838 32 H 0.272 0.728 33 H 0.163 0.837 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.259 -19.345 -8.981 21.365 hybrid contribution -0.095 0.882 -1.536 1.774 sum -1.354 -18.463 -10.517 21.292 Atomic orbital electron populations 1.22297 0.88005 1.00030 1.01114 1.62022 1.07628 1.16598 1.38557 1.20218 0.95304 0.83564 0.97266 1.21004 1.35677 0.97182 1.00858 0.90087 1.24887 0.95730 0.97324 0.95335 1.69893 1.46843 1.13251 1.23880 0.86864 0.80646 0.80081 0.82156 1.20343 1.21109 1.19175 1.21028 1.01054 0.87992 0.93980 1.19981 0.97180 0.97373 0.97169 1.21056 0.93531 0.92758 0.96521 1.18935 0.99686 0.94688 1.01936 1.20783 0.81679 0.79527 0.80388 1.90908 1.51906 1.62147 1.35429 1.84551 1.56482 1.27030 1.64496 1.21209 0.92375 1.00038 0.91852 1.21142 1.01052 0.93806 1.03355 1.17873 0.86609 0.91058 0.89658 1.91592 1.58255 1.85960 1.73545 0.93473 0.89891 0.96731 0.95209 0.99644 0.92639 0.93986 0.89737 0.83847 0.72766 0.83742 0.83834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.15 60.07 0.55 1.21 16 2 N -0.52 -10.95 4.74 -245.82 -1.17 -12.11 16 3 C 0.16 3.93 3.79 -4.98 -0.02 3.91 16 4 C -0.51 -14.48 9.01 -34.44 -0.31 -14.79 16 5 H 0.08 2.51 7.37 -52.48 -0.39 2.13 16 6 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 7 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 8 Si 0.88 21.47 27.47 -169.99 -4.67 16.81 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 12 C 0.09 1.47 4.77 -4.98 -0.02 1.45 16 13 C -0.12 -1.68 4.43 -104.61 -0.46 -2.14 16 14 C -0.02 -0.26 8.64 -39.18 -0.34 -0.60 16 15 C -0.15 -1.75 5.87 -104.98 -0.62 -2.36 16 16 C 0.53 5.92 8.27 34.55 0.29 6.20 16 17 O -0.51 -7.24 17.13 -19.26 -0.33 -7.57 16 18 O -0.51 -3.88 12.68 -40.58 -0.51 -4.39 16 19 C -0.04 -0.36 9.61 -39.19 -0.38 -0.73 16 20 C -0.17 -1.90 10.01 -39.57 -0.40 -2.29 16 21 C 0.17 2.37 7.25 -39.26 -0.28 2.09 16 22 F -0.12 -1.89 16.74 2.25 0.04 -1.85 16 23 H 0.05 0.81 6.87 -51.93 -0.36 0.45 16 24 H 0.08 1.79 6.76 -51.93 -0.35 1.44 16 25 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.03 0.73 6.99 -51.93 -0.36 0.37 16 27 H -0.01 -0.34 7.55 -51.93 -0.39 -0.73 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.04 0.66 7.93 -51.93 -0.41 0.25 16 30 H 0.08 1.41 7.87 -51.93 -0.41 1.00 16 31 H 0.14 1.85 7.59 -52.49 -0.40 1.45 16 32 H 0.41 1.28 9.11 45.56 0.42 1.70 16 33 H 0.14 1.05 7.61 -52.49 -0.40 0.65 16 34 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 299.88 15.07 4.52 4.52 Total: -1.00 -33.27 299.88 -6.50 -39.77 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: -3.06 Total: -2.19 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -2.09 Total: -6.16 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: -0.39 Total: -38.94 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -0.84 Total: -11.96 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.27 -6.50 -39.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231027899.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.088 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds