Wall clock time and date at job start Mon Mar 30 2020 00:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00040 * 2 1 4 4 C 1.50696 * 109.47399 * 66.04221 * 3 2 1 5 5 H 1.08005 * 119.99725 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00189 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99750 * 180.02562 * 6 4 3 8 8 Si 1.86794 * 119.99818 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.46963 * 90.00024 * 8 6 4 10 10 H 1.48502 * 109.47084 * 209.99996 * 8 6 4 11 11 H 1.48500 * 109.47321 * 330.00380 * 8 6 4 12 12 C 1.46899 * 111.00255 * 236.04264 * 2 1 3 13 13 C 1.50703 * 109.47107 * 293.95458 * 12 2 1 14 14 C 1.37837 * 119.93760 * 104.72794 * 13 12 2 15 15 C 1.39693 * 119.87109 * 179.73076 * 14 13 12 16 16 C 1.47592 * 120.11995 * 180.26627 * 15 14 13 17 17 O 1.21489 * 120.00178 * 0.27089 * 16 15 14 18 18 O 1.34732 * 120.00048 * 180.27477 * 16 15 14 19 19 C 1.39724 * 119.75656 * 0.53975 * 15 14 13 20 20 C 1.37802 * 119.86900 * 359.73017 * 19 15 14 21 21 C 1.38653 * 119.93564 * 284.99645 * 13 12 2 22 22 F 1.35098 * 119.87369 * 0.02562 * 21 13 12 23 23 H 1.09005 * 109.46528 * 183.95480 * 1 2 3 24 24 H 1.09000 * 109.46785 * 303.95569 * 1 2 3 25 25 H 1.08997 * 109.47044 * 63.96124 * 1 2 3 26 26 H 1.08998 * 109.47407 * 186.04713 * 3 2 1 27 27 H 1.09007 * 109.46608 * 306.04149 * 3 2 1 28 28 H 0.97008 * 119.99731 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47043 * 53.95437 * 12 2 1 30 30 H 1.09001 * 109.47354 * 173.95499 * 12 2 1 31 31 H 1.07996 * 120.06504 * 359.97438 * 14 13 12 32 32 H 0.96705 * 117.00320 * 180.02562 * 18 16 15 33 33 H 1.07995 * 120.06598 * 179.71283 * 19 15 14 34 34 H 1.08001 * 119.93310 * 179.97438 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0487 6 6 2.0268 3.3496 1.5284 7 7 1.7142 3.9391 2.6617 8 14 3.0000 4.2761 0.2308 9 1 2.0634 4.9797 -0.6819 10 1 3.8863 5.2679 0.8912 11 1 3.8240 3.3174 -0.5484 12 6 1.9955 -0.7660 -1.1375 13 6 1.6370 -2.2205 -0.9727 14 6 0.6288 -2.7710 -1.7345 15 6 0.3014 -4.1208 -1.5846 16 6 -0.7733 -4.7174 -2.4016 17 8 -1.3716 -4.0356 -3.2097 18 8 -1.0908 -6.0181 -2.2511 19 6 0.9912 -4.9025 -0.6543 20 6 1.9936 -4.3401 0.1058 21 6 2.3183 -3.0009 -0.0511 22 9 3.3016 -2.4546 0.6970 23 1 -0.3632 -1.0253 0.0709 24 1 -0.3633 0.5740 0.8524 25 1 -0.3633 0.4511 -0.9233 26 1 3.0797 1.3445 -0.1083 27 1 1.5611 1.9273 -0.8310 28 1 1.9889 4.8553 2.8236 29 1 1.5612 -0.3873 -2.0628 30 1 3.0798 -0.6612 -1.1755 31 1 0.0956 -2.1611 -2.4486 32 1 -1.8012 -6.3639 -2.8087 33 1 0.7390 -5.9453 -0.5310 34 1 2.5271 -4.9433 0.8255 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231027899.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:46 Heat of formation + Delta-G solvation = -126.786808 kcal Electronic energy + Delta-G solvation = -19806.974226 eV Core-core repulsion = 16425.479258 eV Total energy + Delta-G solvation = -3381.494968 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.92311 -41.45412 -39.92360 -38.10483 -37.08026 -34.78503 -33.00718 -32.01259 -29.83349 -28.24927 -25.67840 -25.50519 -23.29605 -22.45057 -21.53031 -19.17605 -18.98906 -18.56491 -18.01108 -17.36378 -16.97833 -16.62157 -16.45815 -15.98201 -15.88342 -15.59776 -14.84443 -14.77619 -14.51807 -14.31149 -13.92191 -13.63598 -13.42864 -13.36903 -12.96318 -12.65303 -12.54573 -12.53204 -12.30479 -11.92331 -11.81338 -11.73363 -11.47740 -10.79725 -10.13822 -9.83722 -9.10735 -8.28645 -6.32287 -0.51189 0.11441 1.34433 1.36490 1.39027 1.47276 2.00890 2.34225 2.51624 3.04313 3.18413 3.28010 3.55265 3.67930 4.00179 4.02229 4.16279 4.38447 4.44086 4.56554 4.61746 4.79837 4.81546 4.86486 4.97300 5.03724 5.10906 5.14821 5.18965 5.51309 5.56860 5.68526 5.93122 6.27575 6.58779 6.73390 6.96688 7.31026 8.88059 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.029960 B = 0.004474 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.367400 B = 6256.828240 C = 6683.296589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.542 5.542 3 C 0.172 3.828 4 C -0.517 4.517 5 H 0.037 0.963 6 C 0.009 3.991 7 N -0.948 5.948 8 Si 0.948 3.052 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.248 1.248 12 C 0.089 3.911 13 C -0.131 4.131 14 C -0.024 4.024 15 C -0.154 4.154 16 C 0.540 3.460 17 O -0.549 6.549 18 O -0.499 6.499 19 C -0.016 4.016 20 C -0.163 4.163 21 C 0.143 3.857 22 F -0.136 7.136 23 H 0.068 0.932 24 H 0.050 0.950 25 H 0.024 0.976 26 H 0.031 0.969 27 H -0.009 1.009 28 H 0.267 0.733 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.141 0.859 32 H 0.435 0.565 33 H 0.180 0.820 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.367 -21.889 -11.328 24.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.266 5.266 3 C 0.045 3.955 4 C -0.555 4.555 5 H 0.055 0.945 6 C -0.189 4.189 7 N -0.589 5.589 8 Si 0.771 3.229 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.172 1.172 12 C -0.038 4.038 13 C -0.132 4.132 14 C -0.042 4.042 15 C -0.156 4.156 16 C 0.386 3.614 17 O -0.442 6.442 18 O -0.313 6.313 19 C -0.034 4.034 20 C -0.182 4.182 21 C 0.123 3.877 22 F -0.115 7.115 23 H 0.087 0.913 24 H 0.069 0.931 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.009 0.991 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.158 0.842 32 H 0.298 0.702 33 H 0.198 0.802 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.003 -21.610 -10.744 24.154 hybrid contribution -0.278 1.368 -0.944 1.685 sum -1.281 -20.241 -11.688 23.409 Atomic orbital electron populations 1.22174 0.87416 1.00870 1.00095 1.61872 1.08318 1.14978 1.41424 1.19964 0.95337 0.85329 0.94861 1.21233 1.34975 0.97508 1.01802 0.94480 1.25838 0.96919 0.98371 0.97744 1.70051 1.48563 1.13895 1.26352 0.85712 0.79264 0.78744 0.79206 1.19211 1.20637 1.17203 1.21010 1.00819 0.89135 0.92831 1.19749 0.98636 0.96090 0.98735 1.21007 0.93142 0.93729 0.96360 1.19090 0.99947 0.94285 1.02252 1.20631 0.81003 0.80270 0.79503 1.90907 1.53095 1.63254 1.36900 1.84489 1.57231 1.24873 1.64673 1.21572 0.90687 1.01266 0.89907 1.21442 1.00868 0.92452 1.03402 1.18237 0.86865 0.92516 0.90066 1.91539 1.59233 1.86505 1.74196 0.91312 0.93143 0.95711 0.95105 0.99109 0.92397 0.92725 0.90008 0.84169 0.70222 0.80239 0.81117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.67 9.15 127.69 1.17 2.84 16 2 N -0.54 -22.84 4.74 -931.63 -4.42 -27.26 16 3 C 0.17 8.35 3.79 85.56 0.32 8.68 16 4 C -0.52 -30.39 9.01 25.60 0.23 -30.16 16 5 H 0.04 2.44 7.37 -2.91 -0.02 2.42 16 6 C 0.01 0.50 5.47 84.66 0.46 0.97 16 7 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 8 Si 0.95 44.34 27.47 68.60 1.88 46.22 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 12 C 0.09 2.97 4.77 85.56 0.41 3.38 16 13 C -0.13 -3.68 4.43 -19.86 -0.09 -3.77 16 14 C -0.02 -0.58 8.64 22.53 0.19 -0.38 16 15 C -0.15 -3.14 5.87 -20.10 -0.12 -3.26 16 16 C 0.54 10.50 8.27 70.29 0.58 11.08 16 17 O -0.55 -14.48 17.13 19.87 0.34 -14.14 16 18 O -0.50 -5.54 12.68 -56.42 -0.72 -6.26 16 19 C -0.02 -0.26 9.61 22.53 0.22 -0.04 16 20 C -0.16 -3.05 10.01 22.27 0.22 -2.83 16 21 C 0.14 3.86 7.25 22.48 0.16 4.03 16 22 F -0.14 -4.45 16.74 44.97 0.75 -3.70 16 23 H 0.07 2.36 6.87 -2.38 -0.02 2.34 16 24 H 0.05 2.28 6.76 -2.39 -0.02 2.26 16 25 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.03 1.49 6.99 -2.39 -0.02 1.47 16 27 H -0.01 -0.41 7.55 -2.38 -0.02 -0.43 16 28 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 29 H 0.05 1.66 7.93 -2.39 -0.02 1.64 16 30 H 0.08 2.71 7.87 -2.39 -0.02 2.69 16 31 H 0.14 3.49 7.59 -2.91 -0.02 3.47 16 32 H 0.44 1.02 9.11 -74.05 -0.67 0.34 16 33 H 0.18 1.61 7.61 -2.91 -0.02 1.59 16 34 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -74.31 299.88 2.31 -71.99 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: 0.41 Total: 2.22 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 3.77 Total: -9.47 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -4.12 Total: -86.87 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.37 Total: -20.40 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.75 Total: -3.70 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.22 kcal Total: -74.31 2.31 -71.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231027899.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.793 kcal (2) G-P(sol) polarization free energy of solvation -74.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds