Wall clock time and date at job start Mon Mar 30 2020 00:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46911 * 1 3 3 C 1.46898 * 110.99847 * 2 1 4 4 C 1.50704 * 109.47162 * 293.95081 * 3 2 1 5 5 H 1.07999 * 119.99542 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00245 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00163 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 119.99936 * 0.02562 * 6 4 3 9 9 H 1.48494 * 109.47216 * 89.99719 * 8 6 4 10 10 H 1.48494 * 109.47398 * 210.00004 * 8 6 4 11 11 H 1.48503 * 109.46980 * 329.99897 * 8 6 4 12 12 C 1.46901 * 110.99785 * 123.95064 * 2 1 3 13 13 C 1.50699 * 109.46990 * 66.04842 * 12 2 1 14 14 C 1.38470 * 119.82786 * 89.99925 * 13 12 2 15 15 C 1.37835 * 120.22966 * 180.02562 * 14 13 12 16 16 C 1.39715 * 119.87076 * 359.97438 * 15 14 13 17 17 C 1.47560 * 120.17224 * 179.97438 * 16 15 14 18 18 O 1.21493 * 120.00376 * 180.02562 * 17 16 15 19 19 O 1.34733 * 120.00156 * 0.02562 * 17 16 15 20 20 C 1.39878 * 119.65669 * 359.97438 * 16 15 14 21 21 F 1.35104 * 120.11514 * 180.02562 * 20 16 15 22 22 C 1.38209 * 119.82339 * 270.25247 * 13 12 2 23 23 H 1.09005 * 109.46822 * 296.04835 * 1 2 3 24 24 H 1.09001 * 109.46876 * 56.04663 * 1 2 3 25 25 H 1.08999 * 109.47033 * 176.04844 * 1 2 3 26 26 H 1.09001 * 109.47228 * 53.95009 * 3 2 1 27 27 H 1.08998 * 109.47243 * 173.95564 * 3 2 1 28 28 H 0.96996 * 120.00010 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47148 * 306.04961 * 12 2 1 30 30 H 1.09001 * 109.46744 * 186.04924 * 12 2 1 31 31 H 1.08007 * 119.88202 * 0.02562 * 14 13 12 32 32 H 1.07993 * 120.06289 * 179.97438 * 15 14 13 33 33 H 0.96694 * 116.99850 * 180.02562 * 19 17 16 34 34 H 1.08001 * 119.93976 * 0.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0741 1.5114 -2.0485 6 6 2.0277 3.3491 -1.5290 7 7 1.7145 3.9389 -2.6620 8 14 3.0021 4.2754 -0.2321 9 1 4.4542 4.0618 -0.4574 10 1 2.6949 5.7253 -0.3239 11 1 2.6316 3.7754 1.1163 12 6 1.9955 -0.7659 1.1377 13 6 1.6370 -2.2204 0.9729 14 6 2.4981 -3.0699 0.2990 15 6 2.1782 -4.4015 0.1430 16 6 0.9811 -4.8956 0.6674 17 6 0.6318 -6.3199 0.5039 18 8 -0.4102 -6.7462 0.9607 19 8 1.4682 -7.1477 -0.1521 20 6 0.1156 -4.0332 1.3483 21 9 -1.0441 -4.5012 1.8595 22 6 0.4480 -2.6981 1.4908 23 1 -0.3633 0.4513 0.9233 24 1 -0.3633 0.5740 -0.8525 25 1 -0.3633 -1.0252 -0.0708 26 1 1.5611 1.9274 0.8309 27 1 3.0798 1.3444 0.1082 28 1 1.9890 4.8550 -2.8240 29 1 1.5611 -0.3872 2.0628 30 1 3.0798 -0.6610 1.1757 31 1 3.4236 -2.6877 -0.1059 32 1 2.8515 -5.0616 -0.3834 33 1 1.1962 -8.0720 -0.2342 34 1 -0.2208 -2.0287 2.0114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234258488.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:50 Heat of formation + Delta-G solvation = -102.024137 kcal Electronic energy + Delta-G solvation = -19601.472670 eV Core-core repulsion = 16221.051492 eV Total energy + Delta-G solvation = -3380.421178 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.99972 -40.46083 -39.15701 -36.58959 -36.25230 -32.85876 -31.78533 -30.78786 -28.18023 -27.24809 -24.78666 -23.06716 -22.68349 -21.16886 -20.26900 -18.36146 -17.69661 -17.02801 -16.72718 -16.31325 -16.14409 -15.34548 -15.01022 -14.68612 -14.59826 -14.49489 -14.03143 -13.43129 -13.25966 -12.83957 -12.45664 -12.26640 -12.08411 -11.77912 -11.75715 -11.52277 -11.23051 -11.04504 -10.77934 -10.61092 -10.41659 -9.98131 -9.37936 -9.19990 -8.87121 -8.63182 -7.55296 -6.11081 -4.09445 0.39738 1.04764 2.32145 2.73080 3.23304 3.31460 3.31696 3.43780 3.96053 4.35809 4.43125 4.65005 4.79098 4.87604 5.06537 5.11441 5.21313 5.48708 5.54089 5.80356 5.83378 5.89136 5.98067 5.98882 6.12104 6.22050 6.40306 6.58140 6.62622 6.76112 6.87478 7.46704 7.65558 7.73564 7.88326 8.56494 8.97235 9.49570 11.01881 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.038742 B = 0.003828 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.558577 B = 7312.300194 C = 7471.635554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.523 5.523 3 C 0.162 3.838 4 C -0.512 4.512 5 H 0.081 0.919 6 C 0.069 3.931 7 N -0.898 5.898 8 Si 0.875 3.125 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.077 3.923 13 C 0.007 3.993 14 C -0.124 4.124 15 C -0.033 4.033 16 C -0.179 4.179 17 C 0.529 3.471 18 O -0.507 6.507 19 O -0.511 6.511 20 C 0.164 3.836 21 F -0.119 7.119 22 C -0.164 4.164 23 H 0.014 0.986 24 H 0.083 0.917 25 H 0.051 0.949 26 H -0.009 1.009 27 H 0.026 0.974 28 H 0.264 0.736 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.414 0.586 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.653 -17.486 8.306 19.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.247 5.247 3 C 0.036 3.964 4 C -0.550 4.550 5 H 0.100 0.900 6 C -0.133 4.133 7 N -0.537 5.537 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.051 4.051 13 C 0.006 3.994 14 C -0.142 4.142 15 C -0.051 4.051 16 C -0.182 4.182 17 C 0.373 3.627 18 O -0.396 6.396 19 O -0.323 6.323 20 C 0.144 3.856 21 F -0.097 7.097 22 C -0.183 4.183 23 H 0.033 0.967 24 H 0.102 0.898 25 H 0.070 0.930 26 H 0.009 0.991 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.161 0.839 32 H 0.164 0.836 33 H 0.273 0.727 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.616 -17.238 7.953 19.053 hybrid contribution -0.197 0.333 1.327 1.382 sum 1.419 -16.905 9.280 19.337 Atomic orbital electron populations 1.22382 0.87949 1.00349 1.01191 1.62026 1.07784 1.16612 1.38304 1.20230 0.95009 0.83557 0.97602 1.20999 1.35920 0.97283 1.00813 0.90049 1.24894 0.95763 0.97316 0.95279 1.69887 1.46667 1.13322 1.23836 0.86871 0.80900 0.79409 0.82616 1.20075 1.21160 1.19298 1.21252 1.01278 0.88551 0.93982 1.20129 0.91670 0.96419 0.91158 1.21170 1.01287 0.92411 0.99373 1.21344 0.93589 0.95826 0.94348 1.18995 0.99149 0.90362 1.09658 1.20617 0.80848 0.86715 0.74512 1.90947 1.24862 1.77374 1.46461 1.84545 1.51093 1.25563 1.71110 1.17609 0.82023 0.91754 0.94233 1.91586 1.45196 1.88899 1.83976 1.21080 0.99084 0.93131 1.04999 0.96725 0.89802 0.93047 0.99130 0.95589 0.92569 0.94049 0.89447 0.83942 0.83572 0.72721 0.83891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 8.93 60.07 0.54 1.07 16 2 N -0.52 -10.07 4.74 -245.81 -1.17 -11.24 16 3 C 0.16 3.68 3.79 -4.97 -0.02 3.66 16 4 C -0.51 -13.99 9.01 -34.44 -0.31 -14.30 16 5 H 0.08 2.44 7.37 -52.49 -0.39 2.05 16 6 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 7 N -0.90 -26.87 13.96 55.43 0.77 -26.10 16 8 Si 0.87 20.68 27.47 -169.99 -4.67 16.01 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 12 C 0.08 1.15 5.11 -4.98 -0.03 1.12 16 13 C 0.01 0.09 4.90 -104.55 -0.51 -0.42 16 14 C -0.12 -1.43 9.67 -39.64 -0.38 -1.82 16 15 C -0.03 -0.35 9.62 -39.18 -0.38 -0.73 16 16 C -0.18 -2.24 5.88 -104.93 -0.62 -2.86 16 17 C 0.53 6.49 8.27 34.53 0.29 6.77 16 18 O -0.51 -7.75 16.13 -19.26 -0.31 -8.06 16 19 O -0.51 -4.32 12.68 -40.58 -0.51 -4.84 16 20 C 0.16 2.22 7.29 -38.94 -0.28 1.93 16 21 F -0.12 -1.78 15.55 2.25 0.04 -1.75 16 22 C -0.16 -2.10 7.90 -39.56 -0.31 -2.41 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 24 H 0.08 1.73 6.76 -51.93 -0.35 1.38 16 25 H 0.05 0.83 6.15 -51.93 -0.32 0.51 16 26 H -0.01 -0.21 7.18 -51.93 -0.37 -0.58 16 27 H 0.03 0.58 7.36 -51.93 -0.38 0.20 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.04 0.58 8.06 -51.93 -0.42 0.16 16 30 H 0.09 1.20 7.87 -51.93 -0.41 0.79 16 31 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16 32 H 0.15 1.23 7.61 -52.49 -0.40 0.83 16 33 H 0.41 1.59 9.11 45.56 0.42 2.01 16 34 H 0.14 1.69 8.00 -52.49 -0.42 1.27 16 LS Contribution 297.10 15.07 4.48 4.48 Total: -1.00 -32.55 297.10 -6.55 -39.10 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -3.06 Total: -1.48 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -2.12 Total: -6.11 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -0.39 Total: -37.34 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.83 Total: -12.90 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.55 -6.55 -39.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234258488.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.926 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds