Wall clock time and date at job start Mon Mar 30 2020 00:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46911 * 1 3 3 C 1.46898 * 110.99847 * 2 1 4 4 C 1.50704 * 109.47162 * 293.95081 * 3 2 1 5 5 H 1.07999 * 119.99542 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00245 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00163 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 119.99936 * 0.02562 * 6 4 3 9 9 H 1.48494 * 109.47216 * 89.99719 * 8 6 4 10 10 H 1.48494 * 109.47398 * 210.00004 * 8 6 4 11 11 H 1.48503 * 109.46980 * 329.99897 * 8 6 4 12 12 C 1.46901 * 110.99785 * 123.95064 * 2 1 3 13 13 C 1.50699 * 109.46990 * 66.04842 * 12 2 1 14 14 C 1.38470 * 119.82786 * 89.99925 * 13 12 2 15 15 C 1.37835 * 120.22966 * 180.02562 * 14 13 12 16 16 C 1.39715 * 119.87076 * 359.97438 * 15 14 13 17 17 C 1.47560 * 120.17224 * 179.97438 * 16 15 14 18 18 O 1.21493 * 120.00376 * 180.02562 * 17 16 15 19 19 O 1.34733 * 120.00156 * 0.02562 * 17 16 15 20 20 C 1.39878 * 119.65669 * 359.97438 * 16 15 14 21 21 F 1.35104 * 120.11514 * 180.02562 * 20 16 15 22 22 C 1.38209 * 119.82339 * 270.25247 * 13 12 2 23 23 H 1.09005 * 109.46822 * 296.04835 * 1 2 3 24 24 H 1.09001 * 109.46876 * 56.04663 * 1 2 3 25 25 H 1.08999 * 109.47033 * 176.04844 * 1 2 3 26 26 H 1.09001 * 109.47228 * 53.95009 * 3 2 1 27 27 H 1.08998 * 109.47243 * 173.95564 * 3 2 1 28 28 H 0.96996 * 120.00010 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47148 * 306.04961 * 12 2 1 30 30 H 1.09001 * 109.46744 * 186.04924 * 12 2 1 31 31 H 1.08007 * 119.88202 * 0.02562 * 14 13 12 32 32 H 1.07993 * 120.06289 * 179.97438 * 15 14 13 33 33 H 0.96694 * 116.99850 * 180.02562 * 19 17 16 34 34 H 1.08001 * 119.93976 * 0.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0741 1.5114 -2.0485 6 6 2.0277 3.3491 -1.5290 7 7 1.7145 3.9389 -2.6620 8 14 3.0021 4.2754 -0.2321 9 1 4.4542 4.0618 -0.4574 10 1 2.6949 5.7253 -0.3239 11 1 2.6316 3.7754 1.1163 12 6 1.9955 -0.7659 1.1377 13 6 1.6370 -2.2204 0.9729 14 6 2.4981 -3.0699 0.2990 15 6 2.1782 -4.4015 0.1430 16 6 0.9811 -4.8956 0.6674 17 6 0.6318 -6.3199 0.5039 18 8 -0.4102 -6.7462 0.9607 19 8 1.4682 -7.1477 -0.1521 20 6 0.1156 -4.0332 1.3483 21 9 -1.0441 -4.5012 1.8595 22 6 0.4480 -2.6981 1.4908 23 1 -0.3633 0.4513 0.9233 24 1 -0.3633 0.5740 -0.8525 25 1 -0.3633 -1.0252 -0.0708 26 1 1.5611 1.9274 0.8309 27 1 3.0798 1.3444 0.1082 28 1 1.9890 4.8550 -2.8240 29 1 1.5611 -0.3872 2.0628 30 1 3.0798 -0.6610 1.1757 31 1 3.4236 -2.6877 -0.1059 32 1 2.8515 -5.0616 -0.3834 33 1 1.1962 -8.0720 -0.2342 34 1 -0.2208 -2.0287 2.0114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234258488.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:49 Heat of formation + Delta-G solvation = -125.153727 kcal Electronic energy + Delta-G solvation = -19602.475644 eV Core-core repulsion = 16221.051492 eV Total energy + Delta-G solvation = -3381.424152 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.06202 -41.38230 -40.17351 -37.97997 -37.12065 -34.73795 -33.09058 -31.73756 -29.91486 -28.53794 -26.20335 -24.18136 -23.81417 -22.36232 -21.70167 -19.23960 -19.02298 -18.57656 -17.82027 -17.33295 -17.14704 -16.62606 -16.32991 -16.12082 -15.91658 -15.66845 -15.31060 -14.62351 -14.48104 -14.29782 -13.92958 -13.52518 -13.30990 -13.07896 -12.88943 -12.65183 -12.59414 -12.37936 -12.32356 -12.06310 -11.87034 -11.66460 -11.42044 -10.74934 -10.18722 -9.84269 -9.05168 -8.24735 -6.28645 -0.57133 0.11521 1.37367 1.39386 1.41094 1.50942 1.92361 2.37913 2.47458 2.98744 3.09133 3.35427 3.55357 3.70088 3.95519 4.12883 4.20161 4.38342 4.49174 4.59449 4.65896 4.76083 4.88074 4.92823 4.98095 5.04137 5.09151 5.21386 5.43637 5.49485 5.55787 5.68794 5.97032 6.29919 6.63445 6.78580 6.89694 7.35027 8.91933 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.038742 B = 0.003828 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.558577 B = 7312.300194 C = 7471.635554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.539 5.539 3 C 0.170 3.830 4 C -0.517 4.517 5 H 0.036 0.964 6 C 0.006 3.994 7 N -0.951 5.951 8 Si 0.948 3.052 9 H -0.262 1.262 10 H -0.287 1.287 11 H -0.247 1.247 12 C 0.079 3.921 13 C -0.004 4.004 14 C -0.120 4.120 15 C -0.019 4.019 16 C -0.187 4.187 17 C 0.534 3.466 18 O -0.545 6.545 19 O -0.496 6.496 20 C 0.143 3.857 21 F -0.133 7.133 22 C -0.162 4.162 23 H 0.025 0.975 24 H 0.047 0.953 25 H 0.071 0.929 26 H -0.008 1.008 27 H 0.039 0.961 28 H 0.266 0.734 29 H 0.053 0.947 30 H 0.103 0.897 31 H 0.160 0.840 32 H 0.175 0.825 33 H 0.435 0.565 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.556 -18.458 9.800 21.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.263 5.263 3 C 0.044 3.956 4 C -0.555 4.555 5 H 0.054 0.946 6 C -0.191 4.191 7 N -0.592 5.592 8 Si 0.772 3.228 9 H -0.187 1.187 10 H -0.213 1.213 11 H -0.171 1.171 12 C -0.048 4.048 13 C -0.005 4.005 14 C -0.139 4.139 15 C -0.037 4.037 16 C -0.189 4.189 17 C 0.380 3.620 18 O -0.437 6.437 19 O -0.310 6.310 20 C 0.123 3.877 21 F -0.111 7.111 22 C -0.181 4.181 23 H 0.044 0.956 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.010 0.990 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.177 0.823 32 H 0.192 0.808 33 H 0.298 0.702 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.532 -18.264 9.451 20.866 hybrid contribution -0.803 0.489 0.769 1.214 sum 2.729 -17.775 10.220 20.685 Atomic orbital electron populations 1.22272 0.87802 1.01043 1.00094 1.61865 1.08104 1.14996 1.41324 1.19997 0.95698 0.85231 0.94713 1.21276 1.34829 0.97514 1.01896 0.94563 1.25867 0.97095 0.98459 0.97648 1.70059 1.48713 1.13890 1.26493 0.85699 0.79510 0.77419 0.80198 1.18717 1.21345 1.17071 1.21295 1.02082 0.88770 0.92619 1.20022 0.92262 0.95718 0.92451 1.21417 1.01521 0.92546 0.98379 1.21601 0.92976 0.95838 0.93300 1.19222 0.99561 0.90655 1.09448 1.20596 0.80466 0.86967 0.74003 1.90938 1.26519 1.78033 1.48200 1.84490 1.49825 1.26950 1.69743 1.17831 0.82113 0.92388 0.95358 1.91547 1.46084 1.89104 1.84392 1.21116 0.99157 0.92987 1.04845 0.95630 0.93394 0.91056 0.99007 0.94277 0.92518 0.92903 0.87912 0.82263 0.80763 0.70205 0.83333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.30 8.93 127.69 1.14 2.44 16 2 N -0.54 -20.01 4.74 -931.61 -4.42 -24.43 16 3 C 0.17 7.50 3.79 85.56 0.32 7.82 16 4 C -0.52 -28.70 9.01 25.60 0.23 -28.47 16 5 H 0.04 2.28 7.37 -2.91 -0.02 2.26 16 6 C 0.01 0.36 5.47 84.65 0.46 0.82 16 7 N -0.95 -58.40 13.96 21.45 0.30 -58.10 16 8 Si 0.95 42.01 27.47 68.60 1.88 43.89 16 9 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 10 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.25 -10.03 6.54 99.48 0.65 -9.37 16 12 C 0.08 2.14 5.11 85.56 0.44 2.58 16 13 C 0.00 -0.09 4.90 -19.82 -0.10 -0.18 16 14 C -0.12 -2.41 9.67 22.23 0.22 -2.19 16 15 C -0.02 -0.35 9.62 22.53 0.22 -0.14 16 16 C -0.19 -4.32 5.88 -20.06 -0.12 -4.43 16 17 C 0.53 12.20 8.27 70.28 0.58 12.78 16 18 O -0.54 -16.31 16.13 19.86 0.32 -15.99 16 19 O -0.50 -6.96 12.68 -56.43 -0.72 -7.67 16 20 C 0.14 3.73 7.29 22.69 0.17 3.89 16 21 F -0.13 -4.00 15.55 44.97 0.70 -3.30 16 22 C -0.16 -3.89 7.90 22.28 0.18 -3.72 16 23 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 24 H 0.05 2.04 6.76 -2.39 -0.02 2.03 16 25 H 0.07 2.24 6.15 -2.39 -0.01 2.23 16 26 H -0.01 -0.34 7.18 -2.39 -0.02 -0.36 16 27 H 0.04 1.63 7.36 -2.39 -0.02 1.61 16 28 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 29 H 0.05 1.32 8.06 -2.39 -0.02 1.30 16 30 H 0.10 2.45 7.87 -2.39 -0.02 2.43 16 31 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 32 H 0.17 2.18 7.61 -2.91 -0.02 2.15 16 33 H 0.44 2.10 9.11 -74.06 -0.67 1.43 16 34 H 0.15 3.30 8.00 -2.91 -0.02 3.28 16 Total: -1.00 -72.02 297.10 2.21 -69.81 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: 0.41 Total: 4.58 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 3.73 Total: -8.80 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -4.12 Total: -82.53 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.40 Total: -23.66 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.70 Total: -3.30 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.88 Total: 43.89 kcal Total: -72.02 2.21 -69.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234258488.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.346 kcal (2) G-P(sol) polarization free energy of solvation -72.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds