Wall clock time and date at job start Mon Mar 30 2020 00:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 C 1.50698 * 109.47316 * 180.02562 * 17 16 14 19 19 C 1.33390 * 125.20293 * 89.99842 * 18 17 16 20 20 C 1.38427 * 114.92038 * 179.97438 * 19 18 17 21 21 C 1.33394 * 114.92334 * 0.02562 * 20 19 18 22 22 S 1.75889 * 125.20278 * 269.69875 * 18 17 16 23 23 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 28 28 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 29 29 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 30 30 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 31 31 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 32 32 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 33 33 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 34 34 H 1.07999 * 122.54268 * 359.96223 * 19 18 17 35 35 H 1.08001 * 122.53852 * 180.02562 * 20 19 18 36 36 H 1.07992 * 125.20755 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 6 4.6486 -0.4945 -5.3767 19 6 4.0151 -0.5420 -6.5496 20 6 4.6710 -1.2548 -7.5384 21 6 5.8370 -1.7867 -7.1683 22 16 6.1634 -1.3814 -5.4881 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.7089 1.1611 3.4845 27 1 0.7376 -2.1442 -1.9996 28 1 2.4629 -2.5817 -1.9866 29 1 1.5295 -2.5968 -0.4711 30 1 3.9016 -1.6021 -3.0168 31 1 2.4483 -1.0887 -3.9070 32 1 3.5409 1.0721 -4.4431 33 1 4.9938 0.5582 -3.5525 34 1 3.0624 -0.0609 -6.7152 35 1 4.2692 -1.3715 -8.5341 36 1 6.4841 -2.3722 -7.8045 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259574551.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:21 Heat of formation + Delta-G solvation = -11.830760 kcal Electronic energy + Delta-G solvation = -17781.303137 eV Core-core repulsion = 14971.006213 eV Total energy + Delta-G solvation = -2810.296923 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.19297 -37.91868 -35.40020 -33.55533 -32.74517 -29.78864 -28.34496 -26.08144 -25.24891 -24.91031 -22.67437 -20.74701 -19.29100 -18.21909 -17.27795 -16.49828 -16.05017 -15.49133 -15.22231 -15.11373 -14.32655 -13.63517 -13.34501 -12.97748 -12.80025 -12.49006 -12.43277 -12.16543 -11.93736 -11.85746 -11.53520 -11.37672 -11.06258 -10.99507 -10.81375 -10.66476 -10.64836 -10.25591 -10.16372 -9.18366 -8.99095 -8.64524 -8.55630 -8.41837 -7.57324 -6.06945 -4.14954 0.92174 1.56466 1.94355 2.66195 3.26322 3.33347 3.35697 3.42035 3.97769 4.39966 4.76381 4.95371 5.12873 5.22421 5.24216 5.34905 5.47141 5.52783 5.67125 5.85417 5.88252 6.04854 6.12866 6.21034 6.24310 6.38253 6.45256 6.76311 6.84526 7.07801 7.43734 7.54911 7.72572 8.02564 8.21037 8.55041 8.83872 9.07416 9.51583 10.98374 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.034956 B = 0.003877 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.815582 B = 7220.977842 C = 7508.203674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.593 5.593 13 C 0.083 3.917 14 C 0.502 3.498 15 O -0.555 6.555 16 C -0.133 4.133 17 C -0.036 4.036 18 C -0.159 4.159 19 C -0.148 4.148 20 C -0.131 4.131 21 C -0.224 4.224 22 S 0.094 5.906 23 H 0.010 0.990 24 H 0.029 0.971 25 H 0.093 0.907 26 H 0.263 0.737 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.461 -6.719 -17.051 19.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.156 3.844 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.324 5.324 13 C -0.061 4.061 14 C 0.289 3.711 15 O -0.435 6.435 16 C -0.174 4.174 17 C -0.075 4.075 18 C -0.276 4.276 19 C -0.178 4.178 20 C -0.162 4.162 21 C -0.360 4.360 22 S 0.357 5.643 23 H 0.029 0.971 24 H 0.048 0.952 25 H 0.111 0.889 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 6.703 -6.313 -15.789 18.278 hybrid contribution -0.892 -0.427 -0.196 1.008 sum 5.811 -6.739 -15.985 18.295 Atomic orbital electron populations 1.22079 0.98238 0.99353 1.00751 1.18934 0.90854 0.94563 0.80006 0.91903 1.21328 1.31810 1.12993 0.90346 0.92264 1.24900 0.94964 0.94967 0.98971 1.69884 1.36396 1.22565 1.23739 0.86495 0.79190 0.79303 0.82413 1.20617 1.19923 1.21088 1.48244 1.48982 1.11631 1.23565 1.21603 0.98792 0.83348 1.02334 1.20366 0.79242 0.87155 0.84322 1.90647 1.58568 1.17222 1.77020 1.21688 1.00717 0.99408 0.95546 1.19916 1.00097 0.96818 0.90693 1.24674 0.98171 1.04889 0.99886 1.20160 1.02140 1.03191 0.92305 1.20163 0.95366 0.99920 1.00738 1.25579 1.02437 1.09006 0.98949 1.84404 1.20982 1.50373 1.08550 0.97065 0.95204 0.88876 0.92690 0.93914 0.92775 0.90135 0.89364 0.89306 0.89135 0.89895 0.84260 0.84537 0.82199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 8.97 37.16 0.33 -3.18 16 2 C 0.26 6.60 2.64 -69.09 -0.18 6.41 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -14.26 7.99 -34.44 -0.28 -14.54 16 5 H 0.06 1.58 7.33 -52.49 -0.38 1.19 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.22 11.32 55.43 0.63 -24.60 16 8 Si 0.90 21.06 29.54 -169.99 -5.02 16.03 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.59 -12.65 2.75 -175.26 -0.48 -13.13 16 13 C 0.08 1.39 9.24 59.85 0.55 1.94 16 14 C 0.50 10.26 7.67 -10.99 -0.08 10.17 16 15 O -0.56 -13.53 15.31 5.56 0.09 -13.44 16 16 C -0.13 -1.95 4.23 -27.89 -0.12 -2.07 16 17 C -0.04 -0.49 5.00 -27.89 -0.14 -0.63 16 18 C -0.16 -1.92 5.76 -36.00 -0.21 -2.13 16 19 C -0.15 -1.61 10.05 -41.21 -0.41 -2.03 16 20 C -0.13 -1.27 10.18 -41.20 -0.42 -1.68 16 21 C -0.22 -2.13 11.23 29.04 0.33 -1.81 16 22 S 0.09 1.03 23.33 -107.50 -2.51 -1.47 16 23 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 24 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 25 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.74 6.44 -51.92 -0.33 0.40 16 29 H 0.08 1.44 7.02 -51.93 -0.36 1.07 16 30 H 0.09 1.19 7.40 -51.93 -0.38 0.81 16 31 H 0.09 1.14 8.11 -51.93 -0.42 0.72 16 32 H 0.09 1.29 8.10 -51.93 -0.42 0.86 16 33 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 34 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 313.74 15.07 4.73 4.73 Total: -1.00 -30.90 313.74 -8.34 -39.24 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.05 Total: 0.51 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -0.72 Total: -7.87 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.15 Total: -37.73 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.09 Total: -13.44 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.51 Total: -1.47 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.90 -8.34 -39.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259574551.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.409 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds