Wall clock time and date at job start Mon Mar 30 2020 00:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 C 1.50698 * 109.47316 * 180.02562 * 17 16 14 19 19 C 1.33390 * 125.20293 * 89.99842 * 18 17 16 20 20 C 1.38427 * 114.92038 * 179.97438 * 19 18 17 21 21 C 1.33394 * 114.92334 * 0.02562 * 20 19 18 22 22 S 1.75889 * 125.20278 * 269.69875 * 18 17 16 23 23 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 28 28 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 29 29 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 30 30 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 31 31 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 32 32 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 33 33 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 34 34 H 1.07999 * 122.54268 * 359.96223 * 19 18 17 35 35 H 1.08001 * 122.53852 * 180.02562 * 20 19 18 36 36 H 1.07992 * 125.20755 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 6 4.6486 -0.4945 -5.3767 19 6 4.0151 -0.5420 -6.5496 20 6 4.6710 -1.2548 -7.5384 21 6 5.8370 -1.7867 -7.1683 22 16 6.1634 -1.3814 -5.4881 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.7089 1.1611 3.4845 27 1 0.7376 -2.1442 -1.9996 28 1 2.4629 -2.5817 -1.9866 29 1 1.5295 -2.5968 -0.4711 30 1 3.9016 -1.6021 -3.0168 31 1 2.4483 -1.0887 -3.9070 32 1 3.5409 1.0721 -4.4431 33 1 4.9938 0.5582 -3.5525 34 1 3.0624 -0.0609 -6.7152 35 1 4.2692 -1.3715 -8.5341 36 1 6.4841 -2.3722 -7.8045 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259574551.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:21 Heat of formation + Delta-G solvation = -29.478472 kcal Electronic energy + Delta-G solvation = -17782.068399 eV Core-core repulsion = 14971.006213 eV Total energy + Delta-G solvation = -2811.062186 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.79645 -38.78487 -37.18114 -34.95426 -34.44954 -31.54746 -29.47616 -27.54308 -27.30827 -26.02734 -23.74480 -22.42703 -20.08998 -19.84465 -18.57815 -18.25354 -17.43180 -17.06807 -16.63714 -16.20809 -16.07762 -15.00626 -14.69884 -14.39319 -13.99424 -13.85366 -13.62908 -13.51707 -13.20302 -13.10944 -12.98576 -12.91785 -12.71137 -12.62186 -12.58545 -12.19979 -12.12929 -11.96640 -11.55791 -11.18743 -10.67846 -10.47592 -9.52684 -9.37338 -9.31322 -8.14844 -6.31544 0.11538 0.74891 1.16087 1.40930 1.42727 1.52575 1.82051 1.88700 2.33703 2.52191 3.13012 3.61626 3.99727 4.07889 4.21092 4.31936 4.41324 4.62894 4.68078 4.75275 4.76326 4.78270 4.89697 4.92341 5.05179 5.08615 5.09829 5.29134 5.44545 5.48019 5.60700 5.64949 5.67790 6.04545 6.16928 6.76783 6.85249 7.32374 7.49581 8.89562 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.034956 B = 0.003877 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.815582 B = 7220.977842 C = 7508.203674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.259 3.741 3 H 0.008 0.992 4 C -0.539 4.539 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.966 3.034 9 H -0.267 1.267 10 H -0.271 1.271 11 H -0.286 1.286 12 N -0.602 5.602 13 C 0.079 3.921 14 C 0.492 3.508 15 O -0.606 6.606 16 C -0.115 4.115 17 C -0.028 4.028 18 C -0.182 4.182 19 C -0.141 4.141 20 C -0.139 4.139 21 C -0.212 4.212 22 S 0.074 5.926 23 H 0.019 0.981 24 H 0.046 0.954 25 H 0.066 0.934 26 H 0.264 0.736 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.150 0.850 35 H 0.163 0.837 36 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.759 -9.238 -18.800 21.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.157 3.843 3 H 0.026 0.974 4 C -0.578 4.578 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.791 3.209 9 H -0.192 1.192 10 H -0.195 1.195 11 H -0.212 1.212 12 N -0.332 5.332 13 C -0.063 4.063 14 C 0.281 3.719 15 O -0.489 6.489 16 C -0.155 4.155 17 C -0.068 4.068 18 C -0.299 4.299 19 C -0.171 4.171 20 C -0.169 4.169 21 C -0.348 4.348 22 S 0.337 5.663 23 H 0.038 0.962 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.135 0.865 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.168 0.832 35 H 0.181 0.819 36 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 6.995 -8.875 -17.562 20.884 hybrid contribution -0.967 0.382 0.260 1.071 sum 6.029 -8.493 -17.302 20.195 Atomic orbital electron populations 1.21860 0.97166 1.00069 0.99872 1.18527 0.91633 0.92236 0.81882 0.97431 1.21596 1.31902 1.13073 0.91207 0.92066 1.25757 0.95089 0.95631 1.02079 1.70030 1.37384 1.23885 1.24418 0.85444 0.78865 0.78251 0.78388 1.19184 1.19529 1.21175 1.48272 1.49085 1.13451 1.22419 1.21857 1.01330 0.80516 1.02602 1.21409 0.78201 0.86796 0.85486 1.90619 1.60189 1.19763 1.78343 1.21636 1.01835 0.99185 0.92841 1.19708 0.99088 0.96645 0.91324 1.24420 0.99269 1.06620 0.99603 1.20436 1.02383 1.02320 0.91995 1.20440 0.95323 0.99537 1.01617 1.25941 1.02580 1.08336 0.97894 1.84479 1.20813 1.50579 1.10452 0.96156 0.93472 0.91500 0.92648 0.91514 0.89187 0.91388 0.87549 0.86461 0.90159 0.91952 0.83207 0.81924 0.79618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.41 8.97 71.98 0.65 -5.76 16 2 C 0.26 13.71 2.64 44.24 0.12 13.83 16 3 H 0.01 0.49 6.90 -2.39 -0.02 0.47 16 4 C -0.54 -29.64 7.99 25.60 0.20 -29.43 16 5 H 0.06 3.26 7.33 -2.91 -0.02 3.23 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -53.54 11.32 21.45 0.24 -53.29 16 8 Si 0.97 43.32 29.54 68.60 2.03 45.34 16 9 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 11 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 12 N -0.60 -25.57 2.75 -826.80 -2.28 -27.84 16 13 C 0.08 2.46 9.24 127.77 1.18 3.64 16 14 C 0.49 20.23 7.67 87.66 0.67 20.91 16 15 O -0.61 -30.96 15.31 -3.03 -0.05 -31.01 16 16 C -0.11 -3.19 4.23 29.85 0.13 -3.06 16 17 C -0.03 -0.77 5.00 29.84 0.15 -0.62 16 18 C -0.18 -4.12 5.76 24.59 0.14 -3.98 16 19 C -0.14 -2.71 10.05 21.22 0.21 -2.50 16 20 C -0.14 -2.20 10.18 21.22 0.22 -1.99 16 21 C -0.21 -3.35 11.23 66.72 0.75 -2.60 16 22 S 0.07 1.50 23.33 -56.49 -1.32 0.18 16 23 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 24 H 0.05 2.08 7.67 -2.39 -0.02 2.06 16 25 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 26 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 27 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.09 2.14 6.44 -2.38 -0.02 2.12 16 29 H 0.07 2.30 7.02 -2.39 -0.02 2.28 16 30 H 0.11 2.60 7.40 -2.39 -0.02 2.58 16 31 H 0.12 2.62 8.11 -2.39 -0.02 2.60 16 32 H 0.08 2.32 8.10 -2.39 -0.02 2.30 16 33 H 0.06 1.93 8.10 -2.39 -0.02 1.91 16 34 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 36 H 0.19 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -69.74 313.74 4.56 -65.18 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 1.06 Total: 11.78 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 4.86 Total: -10.35 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -2.03 Total: -81.14 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.05 Total: -31.01 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -1.32 Total: 0.18 kcal Total: -69.74 4.56 -65.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259574551.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.706 kcal (2) G-P(sol) polarization free energy of solvation -69.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds