Wall clock time and date at job start Mon Mar 30 2020 00:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47386 * 2 1 4 4 C 1.50696 * 109.47294 * 239.99967 * 2 1 3 5 5 H 1.08000 * 120.00131 * 245.37954 * 4 2 1 6 6 C 1.37882 * 119.99857 * 65.37662 * 4 2 1 7 7 N 1.31514 * 120.00102 * 184.90288 * 6 4 2 8 8 Si 1.86795 * 119.99950 * 5.17502 * 6 4 2 9 9 H 1.48493 * 109.47270 * 269.72359 * 8 6 4 10 10 H 1.48500 * 109.47231 * 29.72467 * 8 6 4 11 11 H 1.48512 * 109.47100 * 149.72403 * 8 6 4 12 12 N 1.46496 * 109.47161 * 120.00134 * 2 1 3 13 13 C 1.46502 * 120.00515 * 59.99768 * 12 2 1 14 14 C 1.34782 * 119.99770 * 240.00343 * 12 2 1 15 15 O 1.21279 * 120.00159 * 359.97438 * 14 12 2 16 16 C 1.50704 * 119.99848 * 179.97438 * 14 12 2 17 17 C 1.53001 * 109.46946 * 179.97438 * 16 14 12 18 18 C 1.50704 * 109.46946 * 179.97438 * 17 16 14 19 19 C 1.33380 * 125.20273 * 90.00464 * 18 17 16 20 20 C 1.38426 * 114.92360 * 179.97438 * 19 18 17 21 21 C 1.33385 * 114.91753 * 359.97438 * 20 19 18 22 22 S 1.75888 * 125.19956 * 269.69681 * 18 17 16 23 23 H 1.08997 * 109.47518 * 54.90599 * 1 2 3 24 24 H 1.09004 * 109.47390 * 174.90255 * 1 2 3 25 25 H 1.08998 * 109.47541 * 294.89955 * 1 2 3 26 26 H 0.97000 * 119.99814 * 355.27029 * 7 6 4 27 27 H 1.09001 * 109.46676 * 89.99570 * 13 12 2 28 28 H 1.08990 * 109.47417 * 209.99955 * 13 12 2 29 29 H 1.08996 * 109.46736 * 330.00571 * 13 12 2 30 30 H 1.08994 * 109.47322 * 299.99846 * 16 14 12 31 31 H 1.09005 * 109.47149 * 59.99695 * 16 14 12 32 32 H 1.08994 * 109.47531 * 300.00387 * 17 16 14 33 33 H 1.09005 * 109.46899 * 60.00211 * 17 16 14 34 34 H 1.08005 * 122.54087 * 359.95412 * 19 18 17 35 35 H 1.07999 * 122.54035 * 180.02562 * 20 19 18 36 36 H 1.07999 * 125.20651 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5797 -1.6364 -1.1337 6 6 1.7931 -0.1782 -2.4797 7 7 2.1460 -0.8448 -3.5570 8 14 0.9745 1.4930 -2.6418 9 1 -0.4983 1.3179 -2.7139 10 1 1.3165 2.3282 -1.4625 11 1 1.4547 2.1616 -3.8779 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0355 2.0833 15 8 3.0864 1.1254 1.8912 16 6 3.2950 -0.7458 3.3141 17 6 4.1456 0.2157 4.1466 18 6 4.6469 -0.4944 5.3776 19 6 5.7926 -1.1723 5.4613 20 6 6.0443 -1.7421 6.6975 21 6 5.1032 -1.5263 7.6179 22 16 3.8144 -0.5494 6.9261 23 1 -0.3634 0.5908 -0.8408 24 1 -0.3634 -1.0236 -0.0913 25 1 -0.3634 0.4327 0.9321 26 1 2.6357 -1.6779 -3.4731 27 1 2.4157 -2.7377 0.9716 28 1 1.6238 -2.2852 2.5001 29 1 0.6905 -2.3002 0.9847 30 1 2.4471 -1.0880 3.9073 31 1 3.9004 -1.6025 3.0178 32 1 4.9935 0.5576 3.5532 33 1 3.5404 1.0725 4.4429 34 1 6.4722 -1.2697 4.6276 35 1 6.9355 -2.3170 6.9016 36 1 5.1303 -1.8921 8.6337 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259574553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:25 Heat of formation + Delta-G solvation = -10.528036 kcal Electronic energy + Delta-G solvation = -17850.307148 eV Core-core repulsion = 15040.066715 eV Total energy + Delta-G solvation = -2810.240433 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.36513 -37.98231 -35.60938 -33.65024 -32.73706 -30.44982 -28.57854 -26.27547 -25.17701 -24.62078 -22.72807 -20.67181 -19.33526 -18.27408 -17.57423 -17.30184 -16.20249 -15.63710 -15.35500 -15.25392 -14.03055 -13.74340 -13.36516 -13.06693 -12.87334 -12.79739 -12.60137 -12.32723 -12.08899 -12.00635 -11.79845 -11.64123 -11.41711 -11.31411 -11.03725 -10.72061 -10.53955 -10.04582 -9.72515 -9.17756 -8.88307 -8.71224 -8.60590 -8.50119 -7.79934 -6.46608 -4.15897 0.87219 1.51154 1.88576 2.62219 3.25465 3.35024 3.47336 3.59853 3.80529 4.44606 4.67544 4.91283 5.03117 5.14326 5.22651 5.29067 5.40758 5.45975 5.57430 5.74503 5.81314 5.95458 6.07229 6.13601 6.18927 6.20390 6.29386 6.34959 6.39963 6.52740 6.87915 7.14629 7.40677 7.83336 8.26374 8.35001 8.75614 8.94019 9.54549 10.90863 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.039666 B = 0.003927 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.724878 B = 7129.209589 C = 7211.084322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.226 3.774 3 H 0.062 0.938 4 C -0.601 4.601 5 H 0.060 0.940 6 C 0.032 3.968 7 N -0.909 5.909 8 Si 1.050 2.950 9 H -0.282 1.282 10 H -0.275 1.275 11 H -0.288 1.288 12 N -0.588 5.588 13 C 0.088 3.912 14 C 0.504 3.496 15 O -0.555 6.555 16 C -0.132 4.132 17 C -0.035 4.035 18 C -0.160 4.160 19 C -0.146 4.146 20 C -0.130 4.130 21 C -0.223 4.223 22 S 0.090 5.910 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.030 0.970 26 H 0.267 0.733 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.838 -2.903 20.539 20.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.124 3.876 3 H 0.080 0.920 4 C -0.640 4.640 5 H 0.078 0.922 6 C -0.173 4.173 7 N -0.544 5.544 8 Si 0.879 3.121 9 H -0.209 1.209 10 H -0.200 1.200 11 H -0.214 1.214 12 N -0.319 5.319 13 C -0.056 4.056 14 C 0.291 3.709 15 O -0.435 6.435 16 C -0.173 4.173 17 C -0.075 4.075 18 C -0.278 4.278 19 C -0.176 4.176 20 C -0.161 4.161 21 C -0.358 4.358 22 S 0.353 5.647 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.042 -0.642 19.871 19.909 hybrid contribution 1.929 -2.096 0.589 2.909 sum 2.972 -2.739 20.460 20.855 Atomic orbital electron populations 1.22406 0.99063 1.01080 0.99139 1.19397 0.90125 0.95321 0.82712 0.91986 1.22256 1.40090 1.10577 0.91073 0.92163 1.25707 0.96454 1.03396 0.91762 1.70827 1.36526 1.16805 1.30193 0.83935 0.76192 0.75796 0.76156 1.20940 1.20033 1.21409 1.47959 1.49157 1.11733 1.23022 1.21570 1.01634 0.82896 0.99499 1.20408 0.79021 0.87087 0.84382 1.90642 1.58426 1.17248 1.77154 1.21683 1.00656 0.99619 0.95334 1.19914 1.00555 0.96589 0.90429 1.24641 0.99029 1.05350 0.98745 1.20187 0.97916 1.00711 0.98779 1.20175 1.00508 1.02490 0.92941 1.25573 0.99024 1.07299 1.03912 1.84332 1.24417 1.51375 1.04528 0.92855 0.92854 0.95047 0.92298 0.93159 0.92629 0.90926 0.89349 0.89041 0.89012 0.89971 0.84180 0.84458 0.82152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.65 37.16 0.32 -3.09 16 2 C 0.23 5.51 2.21 -69.09 -0.15 5.36 16 3 H 0.06 1.67 5.40 -51.93 -0.28 1.39 16 4 C -0.60 -16.71 8.77 -34.44 -0.30 -17.02 16 5 H 0.06 1.78 7.74 -52.49 -0.41 1.37 16 6 C 0.03 0.92 5.43 -17.82 -0.10 0.82 16 7 N -0.91 -27.79 13.70 55.43 0.76 -27.03 16 8 Si 1.05 25.76 25.28 -169.99 -4.30 21.46 16 9 H -0.28 -6.46 6.82 56.52 0.39 -6.07 16 10 H -0.27 -6.54 6.35 56.52 0.36 -6.18 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 N -0.59 -12.17 2.75 -175.27 -0.48 -12.65 16 13 C 0.09 1.45 9.43 59.85 0.56 2.01 16 14 C 0.50 9.94 7.67 -10.98 -0.08 9.85 16 15 O -0.56 -12.99 15.31 5.56 0.09 -12.90 16 16 C -0.13 -1.87 4.23 -27.88 -0.12 -1.99 16 17 C -0.04 -0.47 5.00 -27.88 -0.14 -0.61 16 18 C -0.16 -1.88 5.76 -36.00 -0.21 -2.09 16 19 C -0.15 -1.59 10.05 -41.21 -0.41 -2.00 16 20 C -0.13 -1.24 10.18 -41.21 -0.42 -1.66 16 21 C -0.22 -2.05 11.23 29.04 0.33 -1.72 16 22 S 0.09 0.94 23.33 -107.50 -2.51 -1.57 16 23 H 0.05 1.17 4.41 -51.93 -0.23 0.94 16 24 H 0.05 1.09 6.88 -51.93 -0.36 0.73 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.27 8.11 8.72 -40.82 -0.36 7.75 16 27 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 28 H 0.06 0.70 6.44 -51.93 -0.33 0.37 16 29 H 0.07 1.20 6.53 -51.93 -0.34 0.86 16 30 H 0.09 1.09 7.40 -51.93 -0.38 0.70 16 31 H 0.09 1.20 8.11 -51.93 -0.42 0.78 16 32 H 0.09 1.30 8.10 -51.93 -0.42 0.88 16 33 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 34 H 0.14 1.39 8.06 -52.48 -0.42 0.96 16 35 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 307.50 15.07 4.63 4.63 Total: -1.00 -32.37 307.50 -7.45 -39.81 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -4.91 Total: 0.39 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -0.72 Total: -12.14 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.28 Total: -39.68 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.09 Total: -12.90 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -4.30 Total: 21.46 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.51 Total: -1.57 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.37 -7.45 -39.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259574553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.284 kcal (2) G-P(sol) polarization free energy of solvation -32.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds