Wall clock time and date at job start Mon Mar 30 2020 00:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47386 * 2 1 4 4 C 1.50696 * 109.47294 * 239.99967 * 2 1 3 5 5 H 1.08000 * 120.00131 * 245.37954 * 4 2 1 6 6 C 1.37882 * 119.99857 * 65.37662 * 4 2 1 7 7 N 1.31514 * 120.00102 * 184.90288 * 6 4 2 8 8 Si 1.86795 * 119.99950 * 5.17502 * 6 4 2 9 9 H 1.48493 * 109.47270 * 269.72359 * 8 6 4 10 10 H 1.48500 * 109.47231 * 29.72467 * 8 6 4 11 11 H 1.48512 * 109.47100 * 149.72403 * 8 6 4 12 12 N 1.46496 * 109.47161 * 120.00134 * 2 1 3 13 13 C 1.46502 * 120.00515 * 59.99768 * 12 2 1 14 14 C 1.34782 * 119.99770 * 240.00343 * 12 2 1 15 15 O 1.21279 * 120.00159 * 359.97438 * 14 12 2 16 16 C 1.50704 * 119.99848 * 179.97438 * 14 12 2 17 17 C 1.53001 * 109.46946 * 179.97438 * 16 14 12 18 18 C 1.50704 * 109.46946 * 179.97438 * 17 16 14 19 19 C 1.33380 * 125.20273 * 90.00464 * 18 17 16 20 20 C 1.38426 * 114.92360 * 179.97438 * 19 18 17 21 21 C 1.33385 * 114.91753 * 359.97438 * 20 19 18 22 22 S 1.75888 * 125.19956 * 269.69681 * 18 17 16 23 23 H 1.08997 * 109.47518 * 54.90599 * 1 2 3 24 24 H 1.09004 * 109.47390 * 174.90255 * 1 2 3 25 25 H 1.08998 * 109.47541 * 294.89955 * 1 2 3 26 26 H 0.97000 * 119.99814 * 355.27029 * 7 6 4 27 27 H 1.09001 * 109.46676 * 89.99570 * 13 12 2 28 28 H 1.08990 * 109.47417 * 209.99955 * 13 12 2 29 29 H 1.08996 * 109.46736 * 330.00571 * 13 12 2 30 30 H 1.08994 * 109.47322 * 299.99846 * 16 14 12 31 31 H 1.09005 * 109.47149 * 59.99695 * 16 14 12 32 32 H 1.08994 * 109.47531 * 300.00387 * 17 16 14 33 33 H 1.09005 * 109.46899 * 60.00211 * 17 16 14 34 34 H 1.08005 * 122.54087 * 359.95412 * 19 18 17 35 35 H 1.07999 * 122.54035 * 180.02562 * 20 19 18 36 36 H 1.07999 * 125.20651 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5797 -1.6364 -1.1337 6 6 1.7931 -0.1782 -2.4797 7 7 2.1460 -0.8448 -3.5570 8 14 0.9745 1.4930 -2.6418 9 1 -0.4983 1.3179 -2.7139 10 1 1.3165 2.3282 -1.4625 11 1 1.4547 2.1616 -3.8779 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0355 2.0833 15 8 3.0864 1.1254 1.8912 16 6 3.2950 -0.7458 3.3141 17 6 4.1456 0.2157 4.1466 18 6 4.6469 -0.4944 5.3776 19 6 5.7926 -1.1723 5.4613 20 6 6.0443 -1.7421 6.6975 21 6 5.1032 -1.5263 7.6179 22 16 3.8144 -0.5494 6.9261 23 1 -0.3634 0.5908 -0.8408 24 1 -0.3634 -1.0236 -0.0913 25 1 -0.3634 0.4327 0.9321 26 1 2.6357 -1.6779 -3.4731 27 1 2.4157 -2.7377 0.9716 28 1 1.6238 -2.2852 2.5001 29 1 0.6905 -2.3002 0.9847 30 1 2.4471 -1.0880 3.9073 31 1 3.9004 -1.6025 3.0178 32 1 4.9935 0.5576 3.5532 33 1 3.5404 1.0725 4.4429 34 1 6.4722 -1.2697 4.6276 35 1 6.9355 -2.3170 6.9016 36 1 5.1303 -1.8921 8.6337 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259574553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:24 Heat of formation + Delta-G solvation = -30.729688 kcal Electronic energy + Delta-G solvation = -17851.183157 eV Core-core repulsion = 15040.066715 eV Total energy + Delta-G solvation = -2811.116442 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.92241 -38.82449 -37.33157 -35.01461 -34.53586 -32.21516 -29.59804 -27.72187 -26.81494 -26.05782 -23.75330 -22.31725 -20.12132 -19.95113 -19.57925 -18.44816 -17.50824 -17.00412 -16.81756 -16.24481 -15.71069 -15.20488 -14.82341 -14.62943 -14.24209 -14.04297 -13.79822 -13.63375 -13.43995 -13.28836 -13.18607 -13.00498 -12.96153 -12.70517 -12.40223 -12.00560 -11.88759 -11.66371 -11.59324 -11.01793 -10.72638 -10.68434 -9.56964 -9.52779 -9.37713 -8.71803 -6.44955 0.08585 0.72674 1.12509 1.38148 1.51134 1.67063 1.71940 1.84965 2.30109 2.40564 3.04427 3.53929 3.94269 4.03415 4.15049 4.28996 4.32460 4.48453 4.50727 4.62654 4.65440 4.66023 4.71593 4.74335 4.88837 4.92234 5.06176 5.08837 5.26355 5.36734 5.42314 5.61165 5.67114 5.78329 5.99029 6.51694 6.70204 7.25670 7.38294 8.61276 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.039666 B = 0.003927 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.724878 B = 7129.209589 C = 7211.084322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.225 3.775 3 H 0.034 0.966 4 C -0.596 4.596 5 H 0.030 0.970 6 C -0.017 4.017 7 N -0.940 5.940 8 Si 1.084 2.916 9 H -0.250 1.250 10 H -0.268 1.268 11 H -0.290 1.290 12 N -0.599 5.599 13 C 0.085 3.915 14 C 0.495 3.505 15 O -0.599 6.599 16 C -0.117 4.117 17 C -0.028 4.028 18 C -0.183 4.183 19 C -0.145 4.145 20 C -0.141 4.141 21 C -0.212 4.212 22 S 0.088 5.912 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.254 0.746 27 H 0.042 0.958 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.144 0.856 35 H 0.160 0.840 36 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.132 -3.499 23.156 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.121 3.879 3 H 0.052 0.948 4 C -0.635 4.635 5 H 0.049 0.951 6 C -0.215 4.215 7 N -0.576 5.576 8 Si 0.907 3.093 9 H -0.175 1.175 10 H -0.194 1.194 11 H -0.216 1.216 12 N -0.329 5.329 13 C -0.058 4.058 14 C 0.285 3.715 15 O -0.482 6.482 16 C -0.157 4.157 17 C -0.067 4.067 18 C -0.300 4.300 19 C -0.176 4.176 20 C -0.171 4.171 21 C -0.348 4.348 22 S 0.351 5.649 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.119 0.881 29 H 0.091 0.909 30 H 0.134 0.866 31 H 0.125 0.875 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.162 0.838 35 H 0.178 0.822 36 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 0.325 -1.282 22.519 22.558 hybrid contribution 2.260 -1.981 -0.132 3.009 sum 2.585 -3.263 22.387 22.771 Atomic orbital electron populations 1.22250 0.96370 1.01946 1.00336 1.19106 0.92128 0.93653 0.82973 0.94841 1.22438 1.38855 1.09351 0.92856 0.95135 1.26966 0.96862 1.05960 0.91749 1.70938 1.38483 1.16989 1.31204 0.83507 0.77439 0.72207 0.76136 1.17517 1.19380 1.21646 1.48054 1.49461 1.13333 1.22063 1.21789 1.01212 0.80267 1.02485 1.21384 0.77892 0.86776 0.85452 1.90615 1.59771 1.19448 1.78347 1.21650 1.01770 0.99422 0.92840 1.19720 0.99663 0.96323 0.91040 1.24432 1.00101 1.06708 0.98787 1.20424 0.97484 1.00001 0.99653 1.20413 1.01569 1.02833 0.92319 1.25952 0.97929 1.05909 1.04966 1.84331 1.24923 1.51832 1.03828 0.93210 0.91881 0.92555 0.93719 0.93915 0.88067 0.90939 0.86599 0.87497 0.90651 0.91024 0.83804 0.82212 0.79536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.21 8.65 71.98 0.62 -5.58 16 2 C 0.22 10.90 2.21 44.24 0.10 11.00 16 3 H 0.03 1.83 5.40 -2.39 -0.01 1.82 16 4 C -0.60 -33.74 8.77 25.60 0.22 -33.51 16 5 H 0.03 1.86 7.74 -2.91 -0.02 1.84 16 6 C -0.02 -0.99 5.43 84.66 0.46 -0.53 16 7 N -0.94 -58.82 13.70 21.45 0.29 -58.53 16 8 Si 1.08 51.84 25.28 68.60 1.73 53.57 16 9 H -0.25 -10.64 6.82 99.48 0.68 -9.96 16 10 H -0.27 -12.49 6.35 99.48 0.63 -11.86 16 11 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 12 N -0.60 -24.27 2.75 -826.82 -2.28 -26.55 16 13 C 0.08 2.62 9.43 127.77 1.20 3.83 16 14 C 0.50 19.23 7.67 87.66 0.67 19.91 16 15 O -0.60 -28.46 15.31 -3.03 -0.05 -28.50 16 16 C -0.12 -3.09 4.23 29.85 0.13 -2.96 16 17 C -0.03 -0.72 5.00 29.85 0.15 -0.57 16 18 C -0.18 -3.99 5.76 24.59 0.14 -3.85 16 19 C -0.15 -2.86 10.05 21.21 0.21 -2.65 16 20 C -0.14 -2.27 10.18 21.22 0.22 -2.06 16 21 C -0.21 -3.21 11.23 66.72 0.75 -2.46 16 22 S 0.09 1.63 23.33 -56.49 -1.32 0.31 16 23 H 0.05 2.06 4.41 -2.39 -0.01 2.05 16 24 H 0.06 2.44 6.88 -2.38 -0.02 2.42 16 25 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.25 16.01 8.72 -92.71 -0.81 15.20 16 27 H 0.04 1.38 8.09 -2.39 -0.02 1.36 16 28 H 0.10 2.19 6.44 -2.39 -0.02 2.17 16 29 H 0.07 2.24 6.53 -2.39 -0.02 2.22 16 30 H 0.12 2.45 7.40 -2.39 -0.02 2.44 16 31 H 0.11 2.54 8.11 -2.38 -0.02 2.52 16 32 H 0.07 2.16 8.10 -2.39 -0.02 2.15 16 33 H 0.07 1.98 8.10 -2.38 -0.02 1.97 16 34 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 35 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.19 1.77 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -72.04 307.50 4.20 -67.85 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.93 Total: 11.29 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 4.88 Total: -19.44 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -1.98 Total: -85.07 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.05 Total: -28.50 kcal Atomic # 14 Polarization: 51.84 SS G_CDS: 1.73 Total: 53.57 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -1.32 Total: 0.31 kcal Total: -72.04 4.20 -67.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259574553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.117 kcal (2) G-P(sol) polarization free energy of solvation -72.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds