Wall clock time and date at job start Mon Mar 30 2020 00:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35948 * 117.00499 * 2 1 4 4 C 1.38664 * 120.06477 * 359.72167 * 3 2 1 5 5 C 1.38176 * 119.97332 * 180.28026 * 4 3 2 6 6 C 1.38263 * 120.09586 * 359.97378 * 5 4 3 7 7 C 1.50702 * 119.93682 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.46958 * 270.02149 * 7 6 5 9 9 C 1.50702 * 109.47338 * 180.02562 * 8 7 6 10 10 O 1.21300 * 119.99541 * 0.02562 * 9 8 7 11 11 N 1.34767 * 120.00401 * 180.02562 * 9 8 7 12 12 C 1.37101 * 120.00205 * 179.97438 * 11 9 8 13 13 H 1.07999 * 119.99948 * 0.02562 * 12 11 9 14 14 C 1.38956 * 120.00179 * 179.97438 * 12 11 9 15 15 N 1.31405 * 119.99771 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99797 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47006 * 89.99905 * 16 14 12 18 18 H 1.48494 * 109.46949 * 209.99754 * 16 14 12 19 19 H 1.48502 * 109.47335 * 330.00112 * 16 14 12 20 20 C 1.38254 * 120.12337 * 0.04707 * 6 5 4 21 21 C 1.38326 * 120.03416 * 359.95854 * 20 6 5 22 22 F 1.35098 * 120.05006 * 179.97438 * 21 20 6 23 23 H 1.08996 * 109.47574 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46836 * 300.00713 * 1 2 3 25 25 H 1.09001 * 109.46915 * 60.00028 * 1 2 3 26 26 H 1.08008 * 120.01117 * 0.25210 * 4 3 2 27 27 H 1.07999 * 119.95322 * 179.97438 * 5 4 3 28 28 H 1.08994 * 109.47166 * 30.02267 * 7 6 5 29 29 H 1.08994 * 109.46843 * 150.02522 * 7 6 5 30 30 H 1.08999 * 109.47719 * 300.00206 * 8 7 6 31 31 H 1.09007 * 109.47228 * 60.00357 * 8 7 6 32 32 H 0.97001 * 120.00529 * 359.97438 * 11 9 8 33 33 H 0.97008 * 119.99942 * 179.97438 * 15 14 12 34 34 H 1.08004 * 119.98065 * 179.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3751 -0.0058 5 6 1.9219 3.6052 -0.0117 6 6 3.3026 3.6775 -0.0112 7 6 3.9853 5.0210 -0.0170 8 6 4.2167 5.4692 -1.4614 9 6 4.9000 6.8124 -1.4673 10 8 5.1753 7.3574 -0.4191 11 7 5.2052 7.4081 -2.6370 12 6 5.8264 8.6303 -2.6423 13 1 6.0714 9.1155 -1.7091 14 6 6.1415 9.2443 -3.8484 15 7 6.7364 10.4160 -3.8534 16 14 5.7183 8.4047 -5.4625 17 1 4.3582 8.8169 -5.8931 18 1 6.7062 8.7981 -6.4990 19 1 5.7538 6.9315 -5.2784 20 6 4.0580 2.5196 -0.0058 21 6 3.4334 1.2855 -0.0001 22 9 4.1713 0.1538 0.0047 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.2138 2.3201 -0.0063 27 1 1.3344 4.5114 -0.0166 28 1 3.3564 5.7503 0.4934 29 1 4.9431 4.9440 0.4974 30 1 4.8456 4.7399 -1.9719 31 1 3.2588 5.5462 -1.9759 32 1 4.9855 6.9722 -3.4752 33 1 6.9568 10.8444 -4.6953 34 1 5.1365 2.5788 -0.0058 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259616819.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:19 Heat of formation + Delta-G solvation = -101.904393 kcal Electronic energy + Delta-G solvation = -19159.430220 eV Core-core repulsion = 15779.014235 eV Total energy + Delta-G solvation = -3380.415985 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.86092 -40.25027 -38.63311 -37.77402 -34.16274 -33.12555 -31.66525 -30.88905 -29.43529 -27.61794 -25.41295 -23.42457 -22.93298 -21.12244 -19.30905 -18.50867 -18.21873 -17.10309 -16.90197 -16.34705 -15.82113 -15.21899 -14.99940 -14.92906 -14.78692 -14.39765 -14.05240 -13.64842 -13.16268 -12.89961 -12.56717 -12.44307 -12.29116 -12.14403 -11.89784 -11.49958 -11.22290 -11.18085 -11.01647 -10.67052 -10.59040 -9.98571 -9.59006 -9.08785 -8.59901 -8.20600 -8.19644 -6.32531 -3.83969 0.97529 1.07736 2.88554 3.02820 3.06648 3.14911 3.38619 3.73753 4.05950 4.09428 4.47603 4.50606 4.69088 4.80802 4.88458 5.02680 5.11665 5.12846 5.19992 5.32944 5.46005 5.49721 5.69878 5.80352 5.93430 5.99188 6.10862 6.16072 6.38415 6.53329 6.55699 7.04893 7.55703 8.13740 8.57505 8.93334 9.41732 9.81243 10.80565 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.031740 B = 0.003492 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.948668 B = 8016.549530 C = 8168.785042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.083 3.917 4 C -0.179 4.179 5 C -0.086 4.086 6 C -0.079 4.079 7 C -0.059 4.059 8 C -0.128 4.128 9 C 0.448 3.552 10 O -0.580 6.580 11 N -0.589 5.589 12 C -0.307 4.307 13 H 0.120 0.880 14 C 0.042 3.958 15 N -0.881 5.881 16 Si 0.879 3.121 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.269 1.269 20 C -0.113 4.113 21 C 0.070 3.930 22 F -0.135 7.135 23 H 0.100 0.900 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.136 0.864 27 H 0.134 0.866 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.371 0.629 33 H 0.273 0.727 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.097 -19.407 4.273 23.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.037 3.963 4 C -0.198 4.198 5 C -0.105 4.105 6 C -0.080 4.080 7 C -0.097 4.097 8 C -0.169 4.169 9 C 0.235 3.765 10 O -0.463 6.463 11 N -0.227 5.227 12 C -0.436 4.436 13 H 0.137 0.863 14 C -0.161 4.161 15 N -0.521 5.521 16 Si 0.706 3.294 17 H -0.196 1.196 18 H -0.201 1.201 19 H -0.194 1.194 20 C -0.132 4.132 21 C 0.050 3.950 22 F -0.114 7.114 23 H 0.119 0.881 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.154 0.846 27 H 0.152 0.848 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.204 0.796 33 H 0.084 0.916 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.705 -19.085 4.847 23.434 hybrid contribution -0.397 -0.614 -1.493 1.662 sum -13.102 -19.699 3.354 23.895 Atomic orbital electron populations 1.23089 0.78104 1.04090 1.01503 1.86116 1.21577 1.25987 1.88996 1.18978 0.90802 0.85559 1.00946 1.21119 1.00139 0.91464 1.07087 1.20999 0.94100 0.97321 0.98041 1.19885 0.93339 0.95306 0.99428 1.20281 1.01448 0.91277 0.96686 1.21527 1.01407 0.96449 0.97507 1.19847 0.84746 0.87553 0.84361 1.90560 1.57892 1.66616 1.31265 1.42261 1.54506 1.19649 1.06333 1.19462 1.34151 0.93386 0.96604 0.86280 1.25053 0.97136 0.95943 0.98015 1.69623 1.40300 1.14749 1.27414 0.86673 0.79247 0.79542 0.83976 1.19598 1.20150 1.19409 1.21001 1.01312 0.89627 1.01261 1.16964 0.85889 0.82952 1.09182 1.91489 1.76461 1.49085 1.94328 0.88116 0.92488 0.92451 0.84614 0.84764 0.89819 0.89916 0.90225 0.90220 0.79574 0.91593 0.83812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.49 10.36 -19.58 -0.20 -3.69 16 3 C 0.08 0.97 6.69 -39.17 -0.26 0.71 16 4 C -0.18 -1.77 9.04 -39.45 -0.36 -2.13 16 5 C -0.09 -0.91 9.69 -39.60 -0.38 -1.30 16 6 C -0.08 -0.96 5.13 -104.61 -0.54 -1.49 16 7 C -0.06 -0.84 4.63 -27.88 -0.13 -0.97 16 8 C -0.13 -2.01 5.68 -27.88 -0.16 -2.16 16 9 C 0.45 9.93 7.78 -10.99 -0.09 9.84 16 10 O -0.58 -15.17 15.56 5.54 0.09 -15.09 16 11 N -0.59 -13.95 5.09 -10.96 -0.06 -14.00 16 12 C -0.31 -8.67 10.16 -14.93 -0.15 -8.82 16 13 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 14 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 15 N -0.88 -25.69 13.96 55.50 0.77 -24.92 16 16 Si 0.88 19.32 27.74 -169.99 -4.71 14.61 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 20 C -0.11 -1.38 9.67 -39.54 -0.38 -1.76 16 21 C 0.07 0.90 7.31 -39.30 -0.29 0.61 16 22 F -0.13 -1.88 17.11 2.25 0.04 -1.84 16 23 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.30 7.67 -51.93 -0.40 -0.10 16 25 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 26 H 0.14 0.96 6.30 -52.48 -0.33 0.63 16 27 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 28 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 29 H 0.08 1.23 8.04 -51.93 -0.42 0.82 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.08 1.09 8.14 -51.92 -0.42 0.66 16 32 H 0.37 7.73 5.76 -40.82 -0.24 7.50 16 33 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 34 H 0.14 1.59 8.06 -52.48 -0.42 1.16 16 LS Contribution 301.36 15.07 4.54 4.54 Total: -1.00 -33.19 301.36 -5.24 -38.43 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -3.87 Total: 7.21 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -1.84 Total: -5.25 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.72 Total: -38.92 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.12 Total: -18.78 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.61 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.19 -5.24 -38.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259616819.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.476 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds