Wall clock time and date at job start Mon Mar 30 2020 00:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35948 * 117.00499 * 2 1 4 4 C 1.38664 * 120.06477 * 359.72167 * 3 2 1 5 5 C 1.38176 * 119.97332 * 180.28026 * 4 3 2 6 6 C 1.38263 * 120.09586 * 359.97378 * 5 4 3 7 7 C 1.50702 * 119.93682 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.46958 * 270.02149 * 7 6 5 9 9 C 1.50702 * 109.47338 * 180.02562 * 8 7 6 10 10 O 1.21300 * 119.99541 * 0.02562 * 9 8 7 11 11 N 1.34767 * 120.00401 * 180.02562 * 9 8 7 12 12 C 1.37101 * 120.00205 * 179.97438 * 11 9 8 13 13 H 1.07999 * 119.99948 * 0.02562 * 12 11 9 14 14 C 1.38956 * 120.00179 * 179.97438 * 12 11 9 15 15 N 1.31405 * 119.99771 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99797 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47006 * 89.99905 * 16 14 12 18 18 H 1.48494 * 109.46949 * 209.99754 * 16 14 12 19 19 H 1.48502 * 109.47335 * 330.00112 * 16 14 12 20 20 C 1.38254 * 120.12337 * 0.04707 * 6 5 4 21 21 C 1.38326 * 120.03416 * 359.95854 * 20 6 5 22 22 F 1.35098 * 120.05006 * 179.97438 * 21 20 6 23 23 H 1.08996 * 109.47574 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46836 * 300.00713 * 1 2 3 25 25 H 1.09001 * 109.46915 * 60.00028 * 1 2 3 26 26 H 1.08008 * 120.01117 * 0.25210 * 4 3 2 27 27 H 1.07999 * 119.95322 * 179.97438 * 5 4 3 28 28 H 1.08994 * 109.47166 * 30.02267 * 7 6 5 29 29 H 1.08994 * 109.46843 * 150.02522 * 7 6 5 30 30 H 1.08999 * 109.47719 * 300.00206 * 8 7 6 31 31 H 1.09007 * 109.47228 * 60.00357 * 8 7 6 32 32 H 0.97001 * 120.00529 * 359.97438 * 11 9 8 33 33 H 0.97008 * 119.99942 * 179.97438 * 15 14 12 34 34 H 1.08004 * 119.98065 * 179.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3751 -0.0058 5 6 1.9219 3.6052 -0.0117 6 6 3.3026 3.6775 -0.0112 7 6 3.9853 5.0210 -0.0170 8 6 4.2167 5.4692 -1.4614 9 6 4.9000 6.8124 -1.4673 10 8 5.1753 7.3574 -0.4191 11 7 5.2052 7.4081 -2.6370 12 6 5.8264 8.6303 -2.6423 13 1 6.0714 9.1155 -1.7091 14 6 6.1415 9.2443 -3.8484 15 7 6.7364 10.4160 -3.8534 16 14 5.7183 8.4047 -5.4625 17 1 4.3582 8.8169 -5.8931 18 1 6.7062 8.7981 -6.4990 19 1 5.7538 6.9315 -5.2784 20 6 4.0580 2.5196 -0.0058 21 6 3.4334 1.2855 -0.0001 22 9 4.1713 0.1538 0.0047 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.2138 2.3201 -0.0063 27 1 1.3344 4.5114 -0.0166 28 1 3.3564 5.7503 0.4934 29 1 4.9431 4.9440 0.4974 30 1 4.8456 4.7399 -1.9719 31 1 3.2588 5.5462 -1.9759 32 1 4.9855 6.9722 -3.4752 33 1 6.9568 10.8444 -4.6953 34 1 5.1365 2.5788 -0.0058 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259616819.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:19 Heat of formation + Delta-G solvation = -124.753025 kcal Electronic energy + Delta-G solvation = -19160.421011 eV Core-core repulsion = 15779.014235 eV Total energy + Delta-G solvation = -3381.406776 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.83037 -41.07782 -40.29006 -38.75987 -36.08719 -34.35714 -33.71038 -31.71771 -30.46321 -28.37337 -27.03676 -24.80028 -23.75727 -22.14465 -21.18356 -20.11875 -19.27611 -18.03399 -17.93804 -17.39924 -17.13741 -16.77620 -16.20256 -16.03562 -15.78298 -15.44967 -15.17249 -15.05839 -14.63526 -14.37786 -14.03661 -13.62481 -13.56553 -13.02379 -12.94462 -12.83629 -12.40725 -12.36604 -12.09672 -11.96859 -11.84406 -11.82193 -11.51280 -10.45231 -10.24587 -9.92773 -9.10684 -8.41351 -6.02197 0.13103 0.21031 1.31442 1.35961 1.45155 1.97094 2.21661 2.23384 2.51420 2.97564 3.15971 3.23053 3.70104 3.80545 4.01973 4.15442 4.26510 4.34144 4.39553 4.41498 4.45860 4.54482 4.74650 4.79473 4.91828 4.93852 5.12586 5.19679 5.28915 5.55496 5.59582 5.66880 5.96077 6.30775 6.58297 6.88078 7.40443 7.96683 8.76331 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.031740 B = 0.003492 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.948668 B = 8016.549530 C = 8168.785042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.336 6.336 3 C 0.082 3.918 4 C -0.171 4.171 5 C -0.079 4.079 6 C -0.087 4.087 7 C -0.052 4.052 8 C -0.115 4.115 9 C 0.448 3.552 10 O -0.627 6.627 11 N -0.592 5.592 12 C -0.331 4.331 13 H 0.056 0.944 14 C -0.015 4.015 15 N -0.935 5.935 16 Si 0.964 3.036 17 H -0.255 1.255 18 H -0.276 1.276 19 H -0.232 1.232 20 C -0.115 4.115 21 C 0.042 3.958 22 F -0.148 7.148 23 H 0.118 0.882 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.168 0.832 27 H 0.155 0.845 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.390 0.610 33 H 0.279 0.721 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.725 -21.801 2.523 26.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.250 6.250 3 C 0.035 3.965 4 C -0.190 4.190 5 C -0.097 4.097 6 C -0.087 4.087 7 C -0.090 4.090 8 C -0.155 4.155 9 C 0.237 3.763 10 O -0.513 6.513 11 N -0.232 5.232 12 C -0.460 4.460 13 H 0.074 0.926 14 C -0.214 4.214 15 N -0.575 5.575 16 Si 0.784 3.216 17 H -0.180 1.180 18 H -0.201 1.201 19 H -0.156 1.156 20 C -0.134 4.134 21 C 0.022 3.978 22 F -0.127 7.127 23 H 0.136 0.864 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.186 0.814 27 H 0.173 0.827 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.131 0.869 32 H 0.226 0.774 33 H 0.089 0.911 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.354 -21.510 3.111 26.610 hybrid contribution 0.373 0.128 -0.790 0.883 sum -14.980 -21.382 2.321 26.211 Atomic orbital electron populations 1.23434 0.75687 1.05839 1.02824 1.86100 1.24141 1.25958 1.88777 1.19174 0.90582 0.86540 1.00156 1.21412 1.01601 0.90295 1.05648 1.21256 0.93470 0.98501 0.96509 1.19627 0.94024 0.93762 1.01297 1.20129 1.00886 0.92435 0.95528 1.21543 1.02504 0.92212 0.99270 1.21150 0.82930 0.89144 0.83050 1.90543 1.59261 1.68421 1.33052 1.42120 1.54841 1.18461 1.07829 1.19053 1.36365 0.95666 0.94933 0.92573 1.26122 0.96120 0.96426 1.02691 1.69805 1.41653 1.16939 1.29125 0.85378 0.79348 0.80137 0.76774 1.17958 1.20096 1.15553 1.21031 1.01617 0.89603 1.01104 1.17226 0.86734 0.82760 1.11069 1.91446 1.76899 1.49729 1.94638 0.86404 0.91097 0.91043 0.81448 0.82706 0.90488 0.91539 0.87757 0.86872 0.77408 0.91139 0.83607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -6.74 10.36 -92.97 -0.96 -7.70 16 3 C 0.08 1.73 6.69 22.53 0.15 1.88 16 4 C -0.17 -2.74 9.04 22.36 0.20 -2.54 16 5 C -0.08 -1.39 9.69 22.26 0.22 -1.18 16 6 C -0.09 -1.89 5.13 -19.85 -0.10 -2.00 16 7 C -0.05 -1.39 4.63 29.85 0.14 -1.25 16 8 C -0.12 -3.30 5.68 29.85 0.17 -3.13 16 9 C 0.45 19.70 7.78 87.66 0.68 20.38 16 10 O -0.63 -33.90 15.56 -3.09 -0.05 -33.95 16 11 N -0.59 -27.66 5.09 -306.98 -1.56 -29.22 16 12 C -0.33 -19.33 10.16 84.04 0.85 -18.48 16 13 H 0.06 3.90 7.39 -2.91 -0.02 3.88 16 14 C -0.01 -0.83 5.50 84.93 0.47 -0.36 16 15 N -0.93 -56.32 13.96 21.66 0.30 -56.01 16 16 Si 0.96 38.63 27.74 68.60 1.90 40.53 16 17 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 18 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 19 H -0.23 -7.87 6.52 99.48 0.65 -7.23 16 20 C -0.11 -2.64 9.67 22.29 0.22 -2.42 16 21 C 0.04 1.03 7.31 22.45 0.16 1.19 16 22 F -0.15 -4.09 17.11 44.97 0.77 -3.32 16 23 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.07 0.48 7.67 -2.39 -0.02 0.46 16 25 H 0.07 0.49 7.65 -2.39 -0.02 0.47 16 26 H 0.17 1.56 6.30 -2.91 -0.02 1.54 16 27 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 28 H 0.08 2.15 8.04 -2.39 -0.02 2.13 16 29 H 0.07 1.98 8.04 -2.39 -0.02 1.96 16 30 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.11 2.57 8.14 -2.38 -0.02 2.55 16 32 H 0.39 15.09 5.76 -92.71 -0.53 14.56 16 33 H 0.28 15.35 8.31 -92.70 -0.77 14.58 16 34 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -77.48 301.36 5.21 -72.27 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.54 Total: 24.05 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 4.27 Total: -6.64 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -1.26 Total: -85.24 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -1.01 Total: -41.66 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.77 Total: -3.32 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 1.90 Total: 40.53 kcal Total: -77.48 5.21 -72.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259616819.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.481 kcal (2) G-P(sol) polarization free energy of solvation -77.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds