Wall clock time and date at job start Mon Mar 30 2020 00:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35896 * 116.99839 * 2 1 4 4 C 1.38775 * 120.04170 * 0.02829 * 3 2 1 5 5 C 1.38132 * 119.99333 * 179.70028 * 4 3 2 6 6 C 1.38253 * 120.08043 * 0.52319 * 5 4 3 7 7 C 1.50705 * 119.95975 * 179.76402 * 6 5 4 8 8 C 1.50697 * 109.47412 * 264.73231 * 7 6 5 9 9 O 1.21288 * 119.99976 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99949 * 179.97438 * 8 7 6 11 11 C 1.46506 * 120.00147 * 359.97438 * 10 8 7 12 12 C 1.37095 * 120.00157 * 179.97438 * 10 8 7 13 13 H 1.07993 * 120.00335 * 322.82820 * 12 10 8 14 14 C 1.38952 * 119.99996 * 142.82340 * 12 10 8 15 15 N 1.31415 * 120.00391 * 158.40851 * 14 12 10 16 16 Si 1.86801 * 120.00112 * 338.41054 * 14 12 10 17 17 H 1.48507 * 109.47063 * 95.71792 * 16 14 12 18 18 H 1.48500 * 109.47573 * 215.71947 * 16 14 12 19 19 H 1.48496 * 109.47113 * 335.72138 * 16 14 12 20 20 C 1.38482 * 120.08502 * 359.49714 * 6 5 4 21 21 F 1.35095 * 119.99373 * 180.24825 * 20 6 5 22 22 C 1.38380 * 120.00357 * 0.22860 * 20 6 5 23 23 H 1.08997 * 109.47556 * 299.99647 * 1 2 3 24 24 H 1.08996 * 109.47477 * 59.99744 * 1 2 3 25 25 H 1.09003 * 109.46811 * 179.97438 * 1 2 3 26 26 H 1.07990 * 120.00174 * 359.97336 * 4 3 2 27 27 H 1.07999 * 119.96108 * 180.29856 * 5 4 3 28 28 H 1.08997 * 109.47231 * 144.72352 * 7 6 5 29 29 H 1.09001 * 109.46346 * 24.73045 * 7 6 5 30 30 H 1.09008 * 109.46627 * 85.13751 * 11 10 8 31 31 H 1.08995 * 109.47342 * 205.13411 * 11 10 8 32 32 H 1.08993 * 109.46975 * 325.14166 * 11 10 8 33 33 H 0.96998 * 120.00240 * 179.97438 * 15 14 12 34 34 H 1.07990 * 120.04103 * 180.02562 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2909 2.3753 0.0006 5 6 1.9190 3.6055 0.0069 6 6 3.2995 3.6787 0.0016 7 6 3.9819 5.0224 0.0031 8 6 4.3201 5.4157 -1.4118 9 8 4.0355 4.6773 -2.3310 10 7 4.9388 6.5878 -1.6558 11 6 5.2822 7.4800 -0.5456 12 6 5.2470 6.9454 -2.9430 13 1 5.5720 6.1954 -3.6487 14 6 5.1410 8.2729 -3.3395 15 7 5.8099 8.7014 -4.3864 16 14 4.0478 9.4486 -2.3845 17 1 4.8677 10.1948 -1.3964 18 1 3.4115 10.4067 -3.3239 19 1 2.9952 8.6791 -1.6739 20 6 4.0562 2.5189 0.0006 21 9 5.4051 2.5926 0.0005 22 6 3.4306 1.2846 0.0000 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2124 2.3195 0.0006 27 1 1.3309 4.5113 0.0122 28 1 4.8968 4.9646 0.5928 29 1 3.3158 5.7676 0.4380 30 1 6.2427 7.1828 -0.1244 31 1 5.3469 8.5052 -0.9100 32 1 4.5126 7.4156 0.2235 33 1 5.7356 9.6280 -4.6635 34 1 4.0201 0.3797 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259631419.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:59 Heat of formation + Delta-G solvation = -99.032394 kcal Electronic energy + Delta-G solvation = -20096.681719 eV Core-core repulsion = 16716.390273 eV Total energy + Delta-G solvation = -3380.291446 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.97877 -41.18951 -40.44399 -38.33464 -36.67149 -34.21221 -33.23383 -31.71389 -29.22169 -28.19499 -27.71795 -26.11146 -23.91570 -22.71716 -20.62088 -19.45667 -19.05404 -18.06595 -17.95841 -17.34022 -17.04764 -16.78624 -16.51551 -16.31732 -16.10827 -15.65562 -15.25344 -14.70930 -14.49298 -14.24730 -14.11919 -13.87699 -13.49385 -13.33255 -13.21616 -12.81428 -12.65822 -12.53490 -12.21348 -11.90782 -11.85564 -11.79238 -11.05385 -10.43147 -9.89048 -9.70259 -9.16925 -8.51202 -6.14821 0.13141 0.24486 1.21974 1.34381 1.47949 1.96087 2.18183 2.19557 2.46564 2.82721 3.00879 3.41002 3.69231 3.71271 3.94728 4.08648 4.21641 4.29877 4.34503 4.43448 4.44114 4.50297 4.61123 4.69266 4.78080 4.83437 4.99198 5.01360 5.20728 5.36899 5.52775 5.68014 6.02743 6.34439 6.56368 6.94448 7.29770 7.88243 8.66604 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032592 B = 0.004820 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.889200 B = 5807.337907 C = 6057.028183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.329 6.329 3 C 0.147 3.853 4 C -0.209 4.209 5 C -0.044 4.044 6 C -0.143 4.143 7 C -0.085 4.085 8 C 0.458 3.542 9 O -0.613 6.613 10 N -0.486 5.486 11 C 0.055 3.945 12 C -0.340 4.340 13 H 0.036 0.964 14 C 0.007 3.993 15 N -0.915 5.915 16 Si 0.961 3.039 17 H -0.238 1.238 18 H -0.291 1.291 19 H -0.251 1.251 20 C 0.126 3.874 21 F -0.146 7.146 22 C -0.204 4.204 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.122 0.878 26 H 0.167 0.833 27 H 0.158 0.842 28 H 0.110 0.890 29 H 0.135 0.865 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.280 0.720 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.233 -9.154 16.819 22.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.243 6.243 3 C 0.101 3.899 4 C -0.227 4.227 5 C -0.062 4.062 6 C -0.144 4.144 7 C -0.124 4.124 8 C 0.249 3.751 9 O -0.497 6.497 10 N -0.208 5.208 11 C -0.087 4.087 12 C -0.468 4.468 13 H 0.054 0.946 14 C -0.194 4.194 15 N -0.553 5.553 16 Si 0.783 3.217 17 H -0.163 1.163 18 H -0.218 1.218 19 H -0.175 1.175 20 C 0.107 3.893 21 F -0.125 7.125 22 C -0.223 4.223 23 H 0.093 0.907 24 H 0.082 0.918 25 H 0.140 0.860 26 H 0.185 0.815 27 H 0.175 0.825 28 H 0.128 0.872 29 H 0.153 0.847 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.161 -9.557 16.238 22.426 hybrid contribution 0.358 0.576 -0.676 0.958 sum -11.803 -8.981 15.562 21.497 Atomic orbital electron populations 1.23446 0.75775 1.05937 1.02720 1.86040 1.24001 1.25948 1.88295 1.18641 0.91036 0.85385 0.94793 1.21546 1.01845 0.90977 1.08376 1.21002 0.92042 0.99134 0.94051 1.19544 0.95050 0.93178 1.06664 1.20567 1.03267 0.95187 0.93409 1.21216 0.79207 0.82971 0.91745 1.90534 1.57089 1.53490 1.48588 1.43821 1.52247 1.18670 1.06068 1.22295 1.02570 0.94191 0.89656 1.18640 1.45548 0.94008 0.88561 0.94599 1.26283 0.96655 0.98976 0.97528 1.69890 1.38619 1.17881 1.28873 0.85668 0.79662 0.77819 0.78532 1.16271 1.21838 1.17459 1.17385 0.76525 0.94220 1.01192 1.91451 1.30014 1.97216 1.93778 1.20273 0.93642 0.97025 1.11362 0.90722 0.91820 0.85972 0.81523 0.82474 0.87206 0.84735 0.90985 0.92478 0.87855 0.91007 0.83614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -7.37 10.50 -92.38 -0.97 -8.34 16 3 C 0.15 3.86 6.69 22.50 0.15 4.01 16 4 C -0.21 -4.80 9.04 22.37 0.20 -4.60 16 5 C -0.04 -1.17 9.67 22.25 0.22 -0.96 16 6 C -0.14 -4.66 4.38 -19.80 -0.09 -4.74 16 7 C -0.08 -2.76 4.22 29.10 0.12 -2.64 16 8 C 0.46 21.78 7.62 87.66 0.67 22.45 16 9 O -0.61 -35.47 15.90 -3.06 -0.05 -35.52 16 10 N -0.49 -23.93 2.59 -658.90 -1.70 -25.64 16 11 C 0.05 1.97 8.78 127.77 1.12 3.09 16 12 C -0.34 -20.62 9.37 84.04 0.79 -19.83 16 13 H 0.04 2.59 7.90 -2.91 -0.02 2.56 16 14 C 0.01 0.41 5.29 84.93 0.45 0.86 16 15 N -0.92 -55.56 13.96 21.66 0.30 -55.26 16 16 Si 0.96 41.39 24.96 68.60 1.71 43.10 16 17 H -0.24 -8.82 6.69 99.48 0.67 -8.16 16 18 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.25 -10.17 7.11 99.48 0.71 -9.47 16 20 C 0.13 4.35 7.24 22.36 0.16 4.51 16 21 F -0.15 -5.48 16.56 44.97 0.74 -4.73 16 22 C -0.20 -6.16 9.97 22.41 0.22 -5.94 16 23 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 24 H 0.06 0.73 7.66 -2.39 -0.02 0.71 16 25 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.17 2.54 6.30 -2.92 -0.02 2.52 16 27 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 28 H 0.11 3.19 7.75 -2.39 -0.02 3.17 16 29 H 0.13 3.25 7.32 -2.39 -0.02 3.23 16 30 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 31 H 0.06 2.16 3.42 -2.39 -0.01 2.15 16 32 H 0.10 2.70 6.64 -2.39 -0.02 2.68 16 33 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 34 H 0.15 4.02 8.06 -2.92 -0.02 3.99 16 Total: -1.00 -81.78 292.80 6.25 -75.53 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 1.09 Total: 13.34 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 5.13 Total: -2.49 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -1.40 Total: -80.89 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -1.02 Total: -43.86 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.74 Total: -4.73 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.71 Total: 43.10 kcal Total: -81.78 6.25 -75.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259631419.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.504 kcal (2) G-P(sol) polarization free energy of solvation -81.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds