Wall clock time and date at job start Mon Mar 30 2020 00:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37096 * 120.00280 * 2 1 4 4 H 1.08001 * 120.00481 * 201.70967 * 3 2 1 5 5 C 1.38960 * 119.99794 * 21.70214 * 3 2 1 6 6 N 1.31409 * 119.99857 * 11.34839 * 5 3 2 7 7 Si 1.86796 * 120.00071 * 191.34022 * 5 3 2 8 8 H 1.48504 * 109.47329 * 85.07279 * 7 5 3 9 9 H 1.48500 * 109.47112 * 205.07607 * 7 5 3 10 10 H 1.48503 * 109.47133 * 325.07781 * 7 5 3 11 11 C 1.34775 * 120.00087 * 179.97438 * 2 1 3 12 12 O 1.21293 * 119.99919 * 180.02562 * 11 2 1 13 13 C 1.50695 * 120.00066 * 0.02562 * 11 2 1 14 14 C 1.52999 * 109.47374 * 179.97438 * 13 11 2 15 15 O 1.42907 * 109.47213 * 180.02562 * 14 13 11 16 16 C 1.35937 * 116.99795 * 180.02562 * 15 14 13 17 17 C 1.38709 * 120.03498 * 0.27292 * 16 15 14 18 18 C 1.38149 * 119.97255 * 180.25067 * 17 16 15 19 19 C 1.38452 * 120.02801 * 359.47238 * 18 17 16 20 20 F 1.35100 * 119.96915 * 180.29526 * 19 18 17 21 21 C 1.38454 * 120.06502 * 0.27875 * 19 18 17 22 22 C 1.38154 * 120.02420 * 359.97112 * 21 19 18 23 23 H 1.09000 * 109.47276 * 272.17802 * 1 2 3 24 24 H 1.08997 * 109.46895 * 32.17663 * 1 2 3 25 25 H 1.09003 * 109.46773 * 152.17962 * 1 2 3 26 26 H 0.96997 * 120.00215 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.47620 * 59.99564 * 13 11 2 28 28 H 1.09001 * 109.47039 * 299.99877 * 13 11 2 29 29 H 1.08998 * 109.47121 * 60.00284 * 14 13 11 30 30 H 1.09001 * 109.47107 * 300.00044 * 14 13 11 31 31 H 1.08000 * 120.01166 * 0.02962 * 17 16 15 32 32 H 1.07997 * 119.98425 * 179.75207 * 18 17 16 33 33 H 1.07999 * 119.99097 * 179.97438 * 21 19 18 34 34 H 1.08007 * 120.01114 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1731 1.2205 -0.3460 5 6 1.5296 2.3480 0.4450 6 7 0.3757 2.2778 1.0698 7 14 2.3354 4.0082 0.1553 8 1 1.9738 4.5048 -1.1967 9 1 1.8625 4.9734 1.1800 10 1 3.8104 3.8662 0.2523 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1671 0.0010 13 6 1.3854 -2.4723 0.0005 14 6 2.3797 -3.6352 0.0005 15 8 1.6651 -4.8728 -0.0001 16 6 2.4055 -6.0128 0.0004 17 6 3.7907 -5.9410 0.0071 18 6 4.5420 -7.1004 0.0023 19 6 3.9127 -8.3337 0.0019 20 9 4.6485 -9.4668 0.0032 21 6 2.5301 -8.4070 0.0004 22 6 1.7765 -7.2491 -0.0001 23 1 -0.3634 0.0391 1.0269 24 1 -0.3633 0.8698 -0.5473 25 1 -0.3633 -0.9089 -0.4796 26 1 -0.0580 3.0880 1.3801 27 1 0.7590 -2.5303 -0.8896 28 1 0.7585 -2.5298 0.8903 29 1 3.0063 -3.5775 0.8905 30 1 3.0063 -3.5775 -0.8895 31 1 4.2818 -4.9792 0.0125 32 1 5.6205 -7.0447 0.0035 33 1 2.0406 -9.3696 -0.0004 34 1 0.6980 -7.3065 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259798684.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:22 Heat of formation + Delta-G solvation = -87.935535 kcal Electronic energy + Delta-G solvation = -19215.867764 eV Core-core repulsion = 15836.057513 eV Total energy + Delta-G solvation = -3379.810250 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.91330 -40.12718 -38.57589 -37.20268 -34.80660 -32.02988 -31.49481 -31.04034 -29.10103 -26.43513 -25.14517 -23.80412 -22.75636 -21.78324 -18.92383 -18.30025 -17.45865 -16.92391 -16.61559 -16.16229 -15.83197 -15.58285 -14.84795 -14.55290 -14.28154 -14.21367 -13.96021 -13.72168 -13.07021 -12.86543 -12.65178 -12.37520 -11.92439 -11.61972 -11.46981 -11.29004 -11.21341 -10.93670 -10.73098 -10.48785 -10.40289 -10.25826 -9.32667 -9.08520 -8.53461 -8.16029 -7.77629 -6.37323 -3.94368 1.02542 1.11528 3.11124 3.12982 3.22067 3.27760 3.46309 3.79267 4.10578 4.19902 4.57032 4.64904 4.88825 5.00718 5.05881 5.12910 5.28197 5.31682 5.45567 5.62530 5.72916 5.90793 5.98787 6.03149 6.07044 6.13583 6.20571 6.35021 6.61134 6.83991 7.18636 7.37657 7.50803 8.04401 8.40123 9.10459 9.34583 9.87951 10.65896 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.053510 B = 0.003172 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.143599 B = 8825.776942 C = 9276.505370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.441 5.441 3 C -0.308 4.308 4 H 0.100 0.900 5 C 0.030 3.970 6 N -0.882 5.882 7 Si 0.929 3.071 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.446 3.554 12 O -0.595 6.595 13 C -0.127 4.127 14 C 0.078 3.922 15 O -0.315 6.315 16 C 0.132 3.868 17 C -0.181 4.181 18 C -0.111 4.111 19 C 0.048 3.952 20 F -0.145 7.145 21 C -0.115 4.115 22 C -0.130 4.130 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.028 0.972 26 H 0.268 0.732 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.089 -15.637 -1.980 15.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.159 5.159 3 C -0.436 4.436 4 H 0.118 0.882 5 C -0.173 4.173 6 N -0.521 5.521 7 Si 0.755 3.245 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.194 1.194 11 C 0.234 3.766 12 O -0.482 6.482 13 C -0.168 4.168 14 C 0.003 3.997 15 O -0.229 6.229 16 C 0.086 3.914 17 C -0.199 4.199 18 C -0.129 4.129 19 C 0.029 3.971 20 F -0.124 7.124 21 C -0.134 4.134 22 C -0.148 4.148 23 H 0.078 0.922 24 H 0.090 0.910 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.162 0.838 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.157 -15.458 -1.891 15.574 hybrid contribution 0.436 0.816 -0.014 0.925 sum 0.593 -14.642 -1.905 14.777 Atomic orbital electron populations 1.21569 0.80870 0.99050 1.01915 1.43570 1.05711 1.04679 1.61967 1.19689 0.99210 0.83607 1.41118 0.88213 1.25365 0.96464 1.00154 0.95296 1.69998 1.16736 1.29334 1.36048 0.85899 0.79623 0.80931 0.78004 1.20252 1.20898 1.19367 1.19663 0.87850 0.84508 0.84564 1.90522 1.13864 1.87188 1.56593 1.21388 0.98760 0.92321 1.04321 1.22581 0.94598 0.79705 1.02839 1.86026 1.36081 1.12934 1.87827 1.19069 0.89979 0.87033 0.95318 1.21324 0.92908 0.99761 1.05956 1.20957 1.00922 0.90568 1.00500 1.17566 0.89375 0.82117 1.08026 1.91471 1.77170 1.49280 1.94496 1.20906 0.91773 0.99303 1.01389 1.20292 1.00807 0.88799 1.04928 0.92248 0.91049 0.95298 0.92137 0.89413 0.89202 0.91030 0.91109 0.83833 0.84548 0.84297 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.38 8.52 59.85 0.51 2.89 16 2 N -0.44 -11.07 3.02 -122.19 -0.37 -11.44 16 3 C -0.31 -8.46 9.31 -14.93 -0.14 -8.60 16 4 H 0.10 2.86 7.39 -52.49 -0.39 2.47 16 5 C 0.03 0.79 5.12 -17.47 -0.09 0.70 16 6 N -0.88 -23.06 10.56 55.50 0.59 -22.48 16 7 Si 0.93 20.42 29.57 -169.99 -5.03 15.40 16 8 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 C 0.45 10.46 7.63 -10.99 -0.08 10.38 16 12 O -0.60 -15.78 15.67 5.55 0.09 -15.69 16 13 C -0.13 -2.24 4.59 -27.89 -0.13 -2.37 16 14 C 0.08 1.24 4.03 37.16 0.15 1.39 16 15 O -0.32 -4.64 10.14 -19.54 -0.20 -4.84 16 16 C 0.13 1.75 6.69 -39.23 -0.26 1.49 16 17 C -0.18 -2.27 9.04 -39.44 -0.36 -2.63 16 18 C -0.11 -1.26 10.02 -39.54 -0.40 -1.66 16 19 C 0.05 0.56 7.30 -39.42 -0.29 0.27 16 20 F -0.15 -1.73 17.27 2.25 0.04 -1.69 16 21 C -0.11 -1.18 10.02 -39.53 -0.40 -1.58 16 22 C -0.13 -1.44 9.98 -39.44 -0.39 -1.83 16 23 H 0.06 1.34 7.56 -51.93 -0.39 0.94 16 24 H 0.07 1.63 7.00 -51.93 -0.36 1.27 16 25 H 0.03 0.51 6.36 -51.93 -0.33 0.18 16 26 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 27 H 0.09 1.39 7.41 -51.93 -0.38 1.01 16 28 H 0.09 1.49 8.11 -51.93 -0.42 1.07 16 29 H 0.07 1.17 7.60 -51.93 -0.39 0.78 16 30 H 0.07 1.14 7.63 -51.93 -0.40 0.74 16 31 H 0.14 1.79 6.30 -52.49 -0.33 1.46 16 32 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 297.62 15.07 4.49 4.49 Total: -1.00 -29.94 297.62 -6.07 -36.01 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -3.80 Total: 1.79 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -1.87 Total: -1.55 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: 0.22 Total: -33.91 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.11 Total: -20.53 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.94 -6.07 -36.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798684.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.924 kcal (2) G-P(sol) polarization free energy of solvation -29.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds