Wall clock time and date at job start Mon Mar 30 2020 00:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37096 * 120.00280 * 2 1 4 4 H 1.08001 * 120.00481 * 201.70967 * 3 2 1 5 5 C 1.38960 * 119.99794 * 21.70214 * 3 2 1 6 6 N 1.31409 * 119.99857 * 11.34839 * 5 3 2 7 7 Si 1.86796 * 120.00071 * 191.34022 * 5 3 2 8 8 H 1.48504 * 109.47329 * 85.07279 * 7 5 3 9 9 H 1.48500 * 109.47112 * 205.07607 * 7 5 3 10 10 H 1.48503 * 109.47133 * 325.07781 * 7 5 3 11 11 C 1.34775 * 120.00087 * 179.97438 * 2 1 3 12 12 O 1.21293 * 119.99919 * 180.02562 * 11 2 1 13 13 C 1.50695 * 120.00066 * 0.02562 * 11 2 1 14 14 C 1.52999 * 109.47374 * 179.97438 * 13 11 2 15 15 O 1.42907 * 109.47213 * 180.02562 * 14 13 11 16 16 C 1.35937 * 116.99795 * 180.02562 * 15 14 13 17 17 C 1.38709 * 120.03498 * 0.27292 * 16 15 14 18 18 C 1.38149 * 119.97255 * 180.25067 * 17 16 15 19 19 C 1.38452 * 120.02801 * 359.47238 * 18 17 16 20 20 F 1.35100 * 119.96915 * 180.29526 * 19 18 17 21 21 C 1.38454 * 120.06502 * 0.27875 * 19 18 17 22 22 C 1.38154 * 120.02420 * 359.97112 * 21 19 18 23 23 H 1.09000 * 109.47276 * 272.17802 * 1 2 3 24 24 H 1.08997 * 109.46895 * 32.17663 * 1 2 3 25 25 H 1.09003 * 109.46773 * 152.17962 * 1 2 3 26 26 H 0.96997 * 120.00215 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.47620 * 59.99564 * 13 11 2 28 28 H 1.09001 * 109.47039 * 299.99877 * 13 11 2 29 29 H 1.08998 * 109.47121 * 60.00284 * 14 13 11 30 30 H 1.09001 * 109.47107 * 300.00044 * 14 13 11 31 31 H 1.08000 * 120.01166 * 0.02962 * 17 16 15 32 32 H 1.07997 * 119.98425 * 179.75207 * 18 17 16 33 33 H 1.07999 * 119.99097 * 179.97438 * 21 19 18 34 34 H 1.08007 * 120.01114 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1731 1.2205 -0.3460 5 6 1.5296 2.3480 0.4450 6 7 0.3757 2.2778 1.0698 7 14 2.3354 4.0082 0.1553 8 1 1.9738 4.5048 -1.1967 9 1 1.8625 4.9734 1.1800 10 1 3.8104 3.8662 0.2523 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1671 0.0010 13 6 1.3854 -2.4723 0.0005 14 6 2.3797 -3.6352 0.0005 15 8 1.6651 -4.8728 -0.0001 16 6 2.4055 -6.0128 0.0004 17 6 3.7907 -5.9410 0.0071 18 6 4.5420 -7.1004 0.0023 19 6 3.9127 -8.3337 0.0019 20 9 4.6485 -9.4668 0.0032 21 6 2.5301 -8.4070 0.0004 22 6 1.7765 -7.2491 -0.0001 23 1 -0.3634 0.0391 1.0269 24 1 -0.3633 0.8698 -0.5473 25 1 -0.3633 -0.9089 -0.4796 26 1 -0.0580 3.0880 1.3801 27 1 0.7590 -2.5303 -0.8896 28 1 0.7585 -2.5298 0.8903 29 1 3.0063 -3.5775 0.8905 30 1 3.0063 -3.5775 -0.8895 31 1 4.2818 -4.9792 0.0125 32 1 5.6205 -7.0447 0.0035 33 1 2.0406 -9.3696 -0.0004 34 1 0.6980 -7.3065 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259798684.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:21 Heat of formation + Delta-G solvation = -105.230235 kcal Electronic energy + Delta-G solvation = -19216.617718 eV Core-core repulsion = 15836.057513 eV Total energy + Delta-G solvation = -3380.560205 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.82442 -41.19707 -40.32936 -38.25846 -36.72836 -33.82650 -32.86689 -32.12453 -30.12704 -28.26193 -26.79278 -25.22944 -23.77483 -22.86488 -20.59678 -19.43570 -18.88834 -18.43802 -17.75822 -17.45715 -17.36114 -16.55490 -16.43208 -15.99053 -15.85539 -15.60935 -15.17776 -14.58227 -14.34124 -14.24402 -13.91500 -13.64242 -13.51142 -13.29541 -13.08159 -12.77809 -12.69940 -12.57217 -12.24328 -12.13448 -11.76505 -11.66502 -11.02618 -10.44687 -10.19430 -9.73394 -9.13340 -8.34406 -6.00286 0.15348 0.18544 1.37383 1.41337 1.52702 1.92618 1.98742 2.31092 2.55762 3.08095 3.18650 3.31220 3.66088 3.80852 3.86881 3.97440 4.11197 4.12664 4.31066 4.41044 4.55054 4.71600 4.80490 4.83073 4.92060 5.06935 5.11996 5.13098 5.25379 5.40905 5.43724 5.70242 6.06226 6.30328 6.44470 7.13252 7.43930 7.97370 8.66747 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.053510 B = 0.003172 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.143599 B = 8825.776942 C = 9276.505370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.460 5.460 3 C -0.347 4.347 4 H 0.074 0.926 5 C -0.002 4.002 6 N -0.895 5.895 7 Si 0.990 3.010 8 H -0.266 1.266 9 H -0.273 1.273 10 H -0.276 1.276 11 C 0.439 3.561 12 O -0.635 6.635 13 C -0.115 4.115 14 C 0.089 3.911 15 O -0.317 6.317 16 C 0.108 3.892 17 C -0.191 4.191 18 C -0.115 4.115 19 C 0.041 3.959 20 F -0.148 7.148 21 C -0.106 4.106 22 C -0.125 4.125 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.274 0.726 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.137 0.863 32 H 0.150 0.850 33 H 0.169 0.831 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.170 -16.765 -2.174 16.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.178 5.178 3 C -0.475 4.475 4 H 0.092 0.908 5 C -0.204 4.204 6 N -0.534 5.534 7 Si 0.814 3.186 8 H -0.191 1.191 9 H -0.198 1.198 10 H -0.201 1.201 11 C 0.228 3.772 12 O -0.523 6.523 13 C -0.154 4.154 14 C 0.014 3.986 15 O -0.231 6.231 16 C 0.062 3.938 17 C -0.210 4.210 18 C -0.134 4.134 19 C 0.022 3.978 20 F -0.126 7.126 21 C -0.125 4.125 22 C -0.143 4.143 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.131 0.869 28 H 0.124 0.876 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.155 0.845 32 H 0.168 0.832 33 H 0.186 0.814 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.955 -16.606 -2.083 16.764 hybrid contribution 0.796 1.050 0.062 1.320 sum -0.159 -15.556 -2.021 15.687 Atomic orbital electron populations 1.21526 0.79027 1.00470 1.01420 1.43842 1.06995 1.04623 1.62338 1.19652 0.98950 0.85628 1.43263 0.90835 1.26092 0.96976 1.02842 0.94485 1.70070 1.17234 1.30398 1.35665 0.84992 0.78186 0.76905 0.78533 1.19066 1.19775 1.20103 1.20621 0.87770 0.86012 0.82757 1.90488 1.15920 1.88079 1.57828 1.21245 0.98611 0.89397 1.06196 1.22278 0.93943 0.80231 1.02185 1.85975 1.35906 1.12739 1.88448 1.19370 0.90313 0.87152 0.96924 1.21335 0.93053 0.99943 1.06692 1.21115 1.01747 0.90349 1.00171 1.17770 0.90067 0.81956 1.08042 1.91469 1.77345 1.49311 1.94516 1.21220 0.91219 1.00343 0.99710 1.20559 1.01978 0.87977 1.03803 0.93367 0.92732 0.90934 0.91625 0.86909 0.87571 0.92059 0.91679 0.84538 0.83195 0.81351 0.82070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.05 8.52 127.77 1.09 6.14 16 2 N -0.46 -23.27 3.02 -658.89 -1.99 -25.26 16 3 C -0.35 -19.50 9.31 84.04 0.78 -18.72 16 4 H 0.07 4.41 7.39 -2.91 -0.02 4.39 16 5 C 0.00 -0.10 5.12 84.93 0.43 0.33 16 6 N -0.90 -46.63 10.56 21.67 0.23 -46.40 16 7 Si 0.99 41.91 29.57 68.60 2.03 43.94 16 8 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 9 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 10 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 11 C 0.44 20.70 7.63 87.66 0.67 21.37 16 12 O -0.63 -34.60 15.67 -3.07 -0.05 -34.65 16 13 C -0.11 -3.87 4.59 29.85 0.14 -3.73 16 14 C 0.09 2.80 4.03 71.98 0.29 3.09 16 15 O -0.32 -8.85 10.14 -92.84 -0.94 -9.80 16 16 C 0.11 2.71 6.69 22.49 0.15 2.86 16 17 C -0.19 -4.72 9.04 22.36 0.20 -4.52 16 18 C -0.12 -2.52 10.02 22.30 0.22 -2.29 16 19 C 0.04 0.86 7.30 22.37 0.16 1.03 16 20 F -0.15 -3.23 17.27 44.97 0.78 -2.45 16 21 C -0.11 -1.89 10.02 22.30 0.22 -1.67 16 22 C -0.12 -2.46 9.98 22.36 0.22 -2.24 16 23 H 0.05 2.14 7.56 -2.39 -0.02 2.12 16 24 H 0.05 2.48 7.00 -2.39 -0.02 2.46 16 25 H 0.07 2.40 6.36 -2.39 -0.02 2.38 16 26 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 27 H 0.11 3.27 7.41 -2.39 -0.02 3.25 16 28 H 0.11 3.28 8.11 -2.39 -0.02 3.26 16 29 H 0.06 2.03 7.60 -2.39 -0.02 2.01 16 30 H 0.06 2.10 7.63 -2.39 -0.02 2.08 16 31 H 0.14 3.49 6.30 -2.91 -0.02 3.47 16 32 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 33 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -65.14 297.62 5.76 -59.38 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 1.12 Total: 13.59 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 4.59 Total: 1.65 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -1.76 Total: -71.66 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -0.99 Total: -44.44 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.78 Total: -2.45 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -65.14 5.76 -59.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798684.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.848 kcal (2) G-P(sol) polarization free energy of solvation -65.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds