Wall clock time and date at job start Mon Mar 30 2020 00:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37090 * 120.00075 * 2 1 4 4 H 1.07995 * 120.00198 * 204.40025 * 3 2 1 5 5 C 1.38958 * 119.99740 * 24.39287 * 3 2 1 6 6 N 1.31408 * 120.00001 * 12.64040 * 5 3 2 7 7 Si 1.86805 * 119.99700 * 192.64183 * 5 3 2 8 8 H 1.48502 * 109.47023 * 90.00113 * 7 5 3 9 9 H 1.48497 * 109.46773 * 210.00009 * 7 5 3 10 10 H 1.48495 * 109.47165 * 329.99971 * 7 5 3 11 11 C 1.34778 * 119.99836 * 179.97438 * 2 1 3 12 12 O 1.21293 * 119.99556 * 179.97438 * 11 2 1 13 13 C 1.50697 * 120.00133 * 0.02562 * 11 2 1 14 14 C 1.53000 * 109.46986 * 179.97438 * 13 11 2 15 15 O 1.42899 * 109.47388 * 179.97438 * 14 13 11 16 16 C 1.35957 * 117.00499 * 180.02562 * 15 14 13 17 17 C 1.38662 * 120.06069 * 359.97438 * 16 15 14 18 18 C 1.38175 * 119.96765 * 180.02562 * 17 16 15 19 19 C 1.38259 * 120.09727 * 359.97438 * 18 17 16 20 20 C 1.38255 * 120.12721 * 0.02562 * 19 18 17 21 21 C 1.38332 * 120.02514 * 359.97438 * 20 19 18 22 22 F 1.35107 * 120.04239 * 180.02562 * 21 20 19 23 23 H 1.09005 * 109.46919 * 265.86088 * 1 2 3 24 24 H 1.08999 * 109.47284 * 25.86645 * 1 2 3 25 25 H 1.08997 * 109.47149 * 145.86526 * 1 2 3 26 26 H 0.97008 * 119.99625 * 179.97438 * 6 5 3 27 27 H 1.08995 * 109.47258 * 59.99581 * 13 11 2 28 28 H 1.08997 * 109.47047 * 299.99301 * 13 11 2 29 29 H 1.08995 * 109.47319 * 59.99796 * 14 13 11 30 30 H 1.09000 * 109.47233 * 299.99869 * 14 13 11 31 31 H 1.08006 * 120.01135 * 0.04959 * 17 16 15 32 32 H 1.08001 * 119.95110 * 180.27561 * 18 17 16 33 33 H 1.08005 * 119.93668 * 179.97438 * 19 18 17 34 34 H 1.07999 * 119.98395 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1581 1.2290 -0.3864 5 6 1.5487 2.3369 0.4970 6 7 0.4345 2.2491 1.1881 7 14 2.3237 4.0073 0.1826 8 1 1.7869 4.5720 -1.0816 9 1 2.0033 4.9212 1.3084 10 1 3.7967 3.8565 0.0713 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0005 14 6 2.3797 -3.6352 0.0005 15 8 1.6652 -4.8728 0.0011 16 6 2.4057 -6.0130 0.0017 17 6 3.7905 -5.9420 0.0012 18 6 4.5411 -7.1020 0.0013 19 6 3.9135 -8.3340 0.0025 20 6 2.5330 -8.4095 0.0030 21 6 1.7765 -7.2514 0.0029 22 9 0.4274 -7.3247 0.0039 23 1 -0.3633 -0.0742 1.0250 24 1 -0.3634 0.9247 -0.4483 25 1 -0.3633 -0.8506 -0.5766 26 1 0.0146 3.0517 1.5354 27 1 0.7591 -2.5302 -0.8896 28 1 0.7585 -2.5299 0.8903 29 1 3.0063 -3.5775 0.8904 30 1 3.0063 -3.5775 -0.8895 31 1 4.2821 -4.9803 0.0012 32 1 5.6197 -7.0464 0.0054 33 1 4.5028 -9.2391 0.0021 34 1 2.0452 -9.3730 0.0043 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260072413.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:25 Heat of formation + Delta-G solvation = -87.329754 kcal Electronic energy + Delta-G solvation = -19463.527532 eV Core-core repulsion = 16083.743551 eV Total energy + Delta-G solvation = -3379.783982 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.77085 -40.01744 -38.56046 -37.39419 -34.78766 -32.01813 -31.30510 -30.78664 -29.45551 -26.41470 -25.17977 -23.76569 -22.56272 -21.86992 -18.94785 -18.32916 -17.17712 -16.88664 -16.57558 -16.31857 -15.84386 -15.35731 -15.02896 -14.54871 -14.36740 -14.16134 -14.13654 -13.72277 -12.85760 -12.75750 -12.44535 -12.02202 -11.97365 -11.56654 -11.51656 -11.35690 -11.26544 -10.98752 -10.80853 -10.55808 -10.38197 -10.26986 -9.06401 -9.05650 -8.52069 -8.24332 -7.72825 -6.37345 -3.94406 1.00628 1.16632 3.05173 3.13507 3.23002 3.28673 3.47611 3.80954 4.10399 4.18476 4.60945 4.72721 4.91462 5.05940 5.06901 5.08304 5.26602 5.32607 5.41594 5.63728 5.86192 5.89198 5.96036 6.07186 6.09556 6.19507 6.26699 6.37731 6.59455 6.81549 7.16209 7.34814 7.52147 8.07620 8.41696 9.11583 9.35401 9.89675 10.67449 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.043982 B = 0.003549 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.473364 B = 7886.822907 C = 8441.510797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.441 5.441 3 C -0.310 4.310 4 H 0.099 0.901 5 C 0.031 3.969 6 N -0.880 5.880 7 Si 0.928 3.072 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.449 3.551 12 O -0.594 6.594 13 C -0.128 4.128 14 C 0.079 3.921 15 O -0.311 6.311 16 C 0.109 3.891 17 C -0.183 4.183 18 C -0.089 4.089 19 C -0.138 4.138 20 C -0.119 4.119 21 C 0.061 3.939 22 F -0.134 7.134 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.028 0.972 26 H 0.268 0.732 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.927 -16.620 -2.202 16.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.159 5.159 3 C -0.437 4.437 4 H 0.117 0.883 5 C -0.172 4.172 6 N -0.519 5.519 7 Si 0.754 3.246 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.193 1.193 11 C 0.237 3.763 12 O -0.480 6.480 13 C -0.169 4.169 14 C 0.004 3.996 15 O -0.225 6.225 16 C 0.062 3.938 17 C -0.201 4.201 18 C -0.107 4.107 19 C -0.156 4.156 20 C -0.138 4.138 21 C 0.041 3.959 22 F -0.113 7.113 23 H 0.072 0.928 24 H 0.094 0.906 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.161 0.839 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.092 -16.401 -2.104 16.667 hybrid contribution 0.008 0.996 0.001 0.996 sum 2.101 -15.404 -2.104 15.689 Atomic orbital electron populations 1.21534 0.81034 1.00133 1.00819 1.43542 1.05607 1.04636 1.62110 1.19670 1.00724 0.84041 1.39302 0.88319 1.25377 0.96605 1.00235 0.95008 1.69996 1.19151 1.29756 1.32984 0.85900 0.79667 0.81116 0.77879 1.20306 1.20898 1.19311 1.19691 0.87841 0.84521 0.84266 1.90517 1.13860 1.87213 1.56443 1.21397 0.98783 0.92268 1.04420 1.22598 0.94620 0.79547 1.02849 1.86073 1.35786 1.12757 1.87867 1.19072 0.90748 0.86111 0.97910 1.21378 0.91820 1.00867 1.06069 1.21045 1.00284 0.91631 0.97736 1.20891 0.93429 0.98158 1.03127 1.20978 0.94425 0.96739 1.01669 1.17032 0.77394 0.91723 1.09741 1.91496 1.28470 1.96986 1.94328 0.92804 0.90594 0.95324 0.92138 0.89390 0.89147 0.90970 0.91039 0.83867 0.85090 0.85074 0.84329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.40 8.44 59.85 0.51 2.91 16 2 N -0.44 -11.24 3.01 -122.19 -0.37 -11.60 16 3 C -0.31 -8.58 9.24 -14.93 -0.14 -8.72 16 4 H 0.10 2.85 7.45 -52.49 -0.39 2.46 16 5 C 0.03 0.82 5.04 -17.47 -0.09 0.74 16 6 N -0.88 -23.35 10.83 55.50 0.60 -22.74 16 7 Si 0.93 20.56 29.57 -169.99 -5.03 15.53 16 8 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 11 C 0.45 10.75 7.63 -10.99 -0.08 10.67 16 12 O -0.59 -15.96 15.69 5.55 0.09 -15.87 16 13 C -0.13 -2.37 4.68 -27.88 -0.13 -2.50 16 14 C 0.08 1.33 4.03 37.16 0.15 1.48 16 15 O -0.31 -5.14 10.00 -19.61 -0.20 -5.34 16 16 C 0.11 1.59 6.69 -39.18 -0.26 1.33 16 17 C -0.18 -2.31 9.04 -39.45 -0.36 -2.66 16 18 C -0.09 -0.89 10.04 -39.60 -0.40 -1.29 16 19 C -0.14 -1.26 10.04 -39.57 -0.40 -1.65 16 20 C -0.12 -1.24 10.02 -39.54 -0.40 -1.64 16 21 C 0.06 0.83 7.31 -39.30 -0.29 0.54 16 22 F -0.13 -1.99 17.11 2.25 0.04 -1.96 16 23 H 0.05 1.22 7.83 -51.93 -0.41 0.81 16 24 H 0.08 1.77 6.80 -51.93 -0.35 1.42 16 25 H 0.03 0.52 6.61 -51.93 -0.34 0.18 16 26 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 27 H 0.09 1.48 7.41 -51.93 -0.38 1.10 16 28 H 0.09 1.59 8.11 -51.93 -0.42 1.17 16 29 H 0.07 1.23 7.62 -51.93 -0.40 0.83 16 30 H 0.07 1.19 7.62 -51.93 -0.40 0.80 16 31 H 0.14 1.79 6.30 -52.48 -0.33 1.46 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 34 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 297.97 15.07 4.49 4.49 Total: -1.00 -30.93 297.97 -6.08 -37.01 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -3.82 Total: 1.28 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -1.88 Total: -0.80 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.23 Total: -34.35 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.11 Total: -21.21 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.93 -6.08 -37.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260072413.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.315 kcal (2) G-P(sol) polarization free energy of solvation -30.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds