Wall clock time and date at job start Mon Mar 30 2020 00:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37090 * 120.00075 * 2 1 4 4 H 1.07995 * 120.00198 * 204.40025 * 3 2 1 5 5 C 1.38958 * 119.99740 * 24.39287 * 3 2 1 6 6 N 1.31408 * 120.00001 * 12.64040 * 5 3 2 7 7 Si 1.86805 * 119.99700 * 192.64183 * 5 3 2 8 8 H 1.48502 * 109.47023 * 90.00113 * 7 5 3 9 9 H 1.48497 * 109.46773 * 210.00009 * 7 5 3 10 10 H 1.48495 * 109.47165 * 329.99971 * 7 5 3 11 11 C 1.34778 * 119.99836 * 179.97438 * 2 1 3 12 12 O 1.21293 * 119.99556 * 179.97438 * 11 2 1 13 13 C 1.50697 * 120.00133 * 0.02562 * 11 2 1 14 14 C 1.53000 * 109.46986 * 179.97438 * 13 11 2 15 15 O 1.42899 * 109.47388 * 179.97438 * 14 13 11 16 16 C 1.35957 * 117.00499 * 180.02562 * 15 14 13 17 17 C 1.38662 * 120.06069 * 359.97438 * 16 15 14 18 18 C 1.38175 * 119.96765 * 180.02562 * 17 16 15 19 19 C 1.38259 * 120.09727 * 359.97438 * 18 17 16 20 20 C 1.38255 * 120.12721 * 0.02562 * 19 18 17 21 21 C 1.38332 * 120.02514 * 359.97438 * 20 19 18 22 22 F 1.35107 * 120.04239 * 180.02562 * 21 20 19 23 23 H 1.09005 * 109.46919 * 265.86088 * 1 2 3 24 24 H 1.08999 * 109.47284 * 25.86645 * 1 2 3 25 25 H 1.08997 * 109.47149 * 145.86526 * 1 2 3 26 26 H 0.97008 * 119.99625 * 179.97438 * 6 5 3 27 27 H 1.08995 * 109.47258 * 59.99581 * 13 11 2 28 28 H 1.08997 * 109.47047 * 299.99301 * 13 11 2 29 29 H 1.08995 * 109.47319 * 59.99796 * 14 13 11 30 30 H 1.09000 * 109.47233 * 299.99869 * 14 13 11 31 31 H 1.08006 * 120.01135 * 0.04959 * 17 16 15 32 32 H 1.08001 * 119.95110 * 180.27561 * 18 17 16 33 33 H 1.08005 * 119.93668 * 179.97438 * 19 18 17 34 34 H 1.07999 * 119.98395 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1581 1.2290 -0.3864 5 6 1.5487 2.3369 0.4970 6 7 0.4345 2.2491 1.1881 7 14 2.3237 4.0073 0.1826 8 1 1.7869 4.5720 -1.0816 9 1 2.0033 4.9212 1.3084 10 1 3.7967 3.8565 0.0713 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0005 14 6 2.3797 -3.6352 0.0005 15 8 1.6652 -4.8728 0.0011 16 6 2.4057 -6.0130 0.0017 17 6 3.7905 -5.9420 0.0012 18 6 4.5411 -7.1020 0.0013 19 6 3.9135 -8.3340 0.0025 20 6 2.5330 -8.4095 0.0030 21 6 1.7765 -7.2514 0.0029 22 9 0.4274 -7.3247 0.0039 23 1 -0.3633 -0.0742 1.0250 24 1 -0.3634 0.9247 -0.4483 25 1 -0.3633 -0.8506 -0.5766 26 1 0.0146 3.0517 1.5354 27 1 0.7591 -2.5302 -0.8896 28 1 0.7585 -2.5299 0.8903 29 1 3.0063 -3.5775 0.8904 30 1 3.0063 -3.5775 -0.8895 31 1 4.2821 -4.9803 0.0012 32 1 5.6197 -7.0464 0.0054 33 1 4.5028 -9.2391 0.0021 34 1 2.0452 -9.3730 0.0043 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260072413.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:24 Heat of formation + Delta-G solvation = -105.910115 kcal Electronic energy + Delta-G solvation = -19464.333237 eV Core-core repulsion = 16083.743551 eV Total energy + Delta-G solvation = -3380.589686 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.81871 -41.14696 -40.33146 -38.45920 -36.75003 -33.86318 -32.89133 -31.66347 -30.51322 -28.28488 -26.86491 -25.26990 -23.50859 -23.02560 -20.63776 -19.54434 -18.90783 -18.25693 -17.67828 -17.58187 -17.43700 -16.64425 -16.44893 -15.97581 -15.78086 -15.75556 -15.37067 -14.91120 -14.29417 -14.17176 -13.83399 -13.51335 -13.30631 -13.17855 -12.97035 -12.84391 -12.66555 -12.53874 -12.30856 -12.13862 -11.99953 -11.81499 -11.02736 -10.47822 -9.94847 -9.72317 -9.23933 -8.37550 -6.03650 0.12548 0.26248 1.36611 1.40782 1.52938 1.84049 1.95086 2.29620 2.60691 3.05282 3.11077 3.25833 3.67194 3.82163 3.90714 3.97151 4.09921 4.21017 4.32774 4.38093 4.49747 4.65421 4.73921 4.77705 5.00193 5.00432 5.10525 5.26532 5.33587 5.42253 5.43312 5.71212 6.05727 6.23703 6.42391 7.10751 7.40153 7.94464 8.65681 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.043982 B = 0.003549 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.473364 B = 7886.822907 C = 8441.510797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.458 5.458 3 C -0.348 4.348 4 H 0.074 0.926 5 C -0.002 4.002 6 N -0.895 5.895 7 Si 0.992 3.008 8 H -0.264 1.264 9 H -0.274 1.274 10 H -0.274 1.274 11 C 0.442 3.558 12 O -0.631 6.631 13 C -0.116 4.116 14 C 0.092 3.908 15 O -0.326 6.326 16 C 0.074 3.926 17 C -0.195 4.195 18 C -0.085 4.085 19 C -0.122 4.122 20 C -0.112 4.112 21 C 0.036 3.964 22 F -0.148 7.148 23 H 0.045 0.955 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.275 0.725 27 H 0.109 0.891 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.136 0.864 32 H 0.160 0.840 33 H 0.172 0.828 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.316 -18.208 -2.413 18.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.176 5.176 3 C -0.476 4.476 4 H 0.092 0.908 5 C -0.204 4.204 6 N -0.533 5.533 7 Si 0.815 3.185 8 H -0.189 1.189 9 H -0.199 1.199 10 H -0.199 1.199 11 C 0.231 3.769 12 O -0.519 6.519 13 C -0.156 4.156 14 C 0.017 3.983 15 O -0.240 6.240 16 C 0.028 3.972 17 C -0.214 4.214 18 C -0.103 4.103 19 C -0.140 4.140 20 C -0.131 4.131 21 C 0.016 3.984 22 F -0.127 7.127 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.128 0.872 28 H 0.120 0.880 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.154 0.846 32 H 0.178 0.822 33 H 0.190 0.810 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.451 -18.010 -2.314 18.322 hybrid contribution -0.050 1.350 0.085 1.354 sum 2.401 -16.660 -2.228 16.978 Atomic orbital electron populations 1.21497 0.79262 1.01036 1.00790 1.43809 1.06855 1.04604 1.62371 1.19659 1.00614 0.85962 1.41376 0.90777 1.26142 0.96997 1.03108 0.94142 1.70066 1.19678 1.30929 1.32676 0.84954 0.78355 0.76767 0.78399 1.18940 1.19873 1.19927 1.20541 0.87755 0.85894 0.82690 1.90479 1.15739 1.88041 1.57680 1.21249 0.98678 0.89758 1.05917 1.22296 0.93887 0.79816 1.02343 1.85999 1.36246 1.12981 1.88799 1.19404 0.91685 0.85715 1.00434 1.21477 0.91273 1.01834 1.06772 1.21455 1.01696 0.91058 0.96079 1.21394 0.93099 0.99229 1.00283 1.21387 0.95018 0.96701 0.99979 1.17453 0.77145 0.92464 1.11322 1.91451 1.29561 1.97066 1.94640 0.93683 0.92173 0.91348 0.91575 0.87238 0.87969 0.91823 0.91368 0.84628 0.82211 0.81016 0.81534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.17 8.44 127.77 1.08 6.25 16 2 N -0.46 -23.78 3.01 -658.89 -1.98 -25.76 16 3 C -0.35 -19.83 9.24 84.04 0.78 -19.05 16 4 H 0.07 4.48 7.45 -2.91 -0.02 4.45 16 5 C 0.00 -0.09 5.04 84.93 0.43 0.33 16 6 N -0.90 -47.51 10.83 21.67 0.23 -47.28 16 7 Si 0.99 42.23 29.57 68.60 2.03 44.25 16 8 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 9 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 C 0.44 21.57 7.63 87.66 0.67 22.24 16 12 O -0.63 -35.05 15.69 -3.07 -0.05 -35.10 16 13 C -0.12 -4.27 4.68 29.85 0.14 -4.13 16 14 C 0.09 3.16 4.03 71.98 0.29 3.45 16 15 O -0.33 -10.91 10.00 -93.07 -0.93 -11.84 16 16 C 0.07 2.16 6.69 22.53 0.15 2.31 16 17 C -0.19 -4.82 9.04 22.36 0.20 -4.62 16 18 C -0.08 -1.48 10.04 22.26 0.22 -1.25 16 19 C -0.12 -1.75 10.04 22.28 0.22 -1.52 16 20 C -0.11 -2.02 10.02 22.30 0.22 -1.80 16 21 C 0.04 0.95 7.31 22.45 0.16 1.11 16 22 F -0.15 -4.39 17.11 44.97 0.77 -3.62 16 23 H 0.04 2.04 7.83 -2.38 -0.02 2.02 16 24 H 0.06 2.81 6.80 -2.39 -0.02 2.80 16 25 H 0.07 2.42 6.61 -2.39 -0.02 2.40 16 26 H 0.27 13.61 8.31 -92.70 -0.77 12.84 16 27 H 0.11 3.55 7.41 -2.39 -0.02 3.54 16 28 H 0.10 3.53 8.11 -2.39 -0.02 3.51 16 29 H 0.06 2.25 7.62 -2.39 -0.02 2.23 16 30 H 0.07 2.35 7.62 -2.39 -0.02 2.33 16 31 H 0.14 3.47 6.30 -2.91 -0.02 3.45 16 32 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 33 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 34 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -68.90 297.97 5.76 -63.14 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 1.12 Total: 12.88 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 4.57 Total: 3.32 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -1.75 Total: -73.04 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -0.98 Total: -46.94 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.77 Total: -3.62 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -68.90 5.76 -63.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260072413.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.766 kcal (2) G-P(sol) polarization free energy of solvation -68.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds