Wall clock time and date at job start Mon Mar 30 2020 00:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47527 * 2 1 4 4 O 1.42901 * 109.46989 * 240.00331 * 2 1 3 5 5 C 1.35899 * 117.00317 * 87.84507 * 4 2 1 6 6 C 1.38762 * 120.04394 * 175.26965 * 5 4 2 7 7 C 1.38135 * 119.99569 * 180.02562 * 6 5 4 8 8 C 1.38257 * 120.08020 * 0.26913 * 7 6 5 9 9 C 1.38478 * 120.08158 * 359.45451 * 8 7 6 10 10 F 1.35096 * 119.99920 * 180.27070 * 9 8 7 11 11 C 1.38391 * 120.00444 * 0.55162 * 9 8 7 12 12 C 1.50697 * 109.47374 * 120.00102 * 2 1 3 13 13 O 1.21294 * 120.00042 * 119.99838 * 12 2 1 14 14 N 1.34779 * 120.00239 * 300.00314 * 12 2 1 15 15 C 1.46497 * 119.99632 * 359.97438 * 14 12 2 16 16 C 1.37089 * 120.00002 * 179.97438 * 14 12 2 17 17 H 1.07997 * 120.00365 * 320.32430 * 16 14 12 18 18 C 1.38948 * 119.99975 * 140.33157 * 16 14 12 19 19 N 1.31417 * 120.00295 * 161.47279 * 18 16 14 20 20 Si 1.86799 * 120.00090 * 341.47339 * 18 16 14 21 21 H 1.48498 * 109.47443 * 95.38718 * 20 18 16 22 22 H 1.48497 * 109.47596 * 215.38943 * 20 18 16 23 23 H 1.48499 * 109.47020 * 335.38758 * 20 18 16 24 24 H 1.09000 * 109.46775 * 299.99802 * 1 2 3 25 25 H 1.09004 * 109.47068 * 59.99556 * 1 2 3 26 26 H 1.08994 * 109.47185 * 179.97438 * 1 2 3 27 27 H 1.08003 * 120.00695 * 359.97438 * 6 5 4 28 28 H 1.08000 * 119.96282 * 179.97438 * 7 6 5 29 29 H 1.07998 * 119.96229 * 179.70256 * 8 7 6 30 30 H 1.07999 * 120.03738 * 179.74955 * 11 9 8 31 31 H 1.08998 * 109.47317 * 87.13821 * 15 14 12 32 32 H 1.09001 * 109.47094 * 207.13788 * 15 14 12 33 33 H 1.09011 * 109.47124 * 327.13782 * 15 14 12 34 34 H 0.96999 * 119.99834 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1690 0.0759 -2.2887 6 6 2.7203 -0.4910 -3.4290 7 6 2.8858 0.2719 -4.5686 8 6 2.5078 1.6018 -4.5732 9 6 1.9520 2.1693 -3.4389 10 9 1.5783 3.4675 -3.4470 11 6 1.7848 1.4083 -2.2952 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6966 1.1191 14 7 1.7068 -0.2500 2.4546 15 6 0.8649 0.9413 2.5890 16 6 2.1634 -0.8966 3.5738 17 1 2.1948 -1.9759 3.5990 18 6 2.5856 -0.1635 4.6761 19 7 2.6749 -0.7399 5.8537 20 14 3.0264 1.6416 4.4840 21 1 1.8504 2.4782 4.8335 22 1 4.1566 1.9741 5.3879 23 1 3.4226 1.9074 3.0777 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.0208 -1.5284 -3.4253 28 1 3.3153 -0.1697 -5.4557 29 1 2.6425 2.1977 -5.4638 30 1 1.3552 1.8515 -1.4090 31 1 -0.1848 0.6484 2.5711 32 1 1.0873 1.4387 3.5331 33 1 1.0660 1.6235 1.7628 34 1 2.9693 -0.2279 6.6232 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263652800.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:37 Heat of formation + Delta-G solvation = -65.744521 kcal Electronic energy + Delta-G solvation = -20265.118192 eV Core-core repulsion = 16886.270216 eV Total energy + Delta-G solvation = -3378.847976 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.02846 -40.42541 -38.79299 -37.08083 -34.92945 -32.61181 -31.43732 -30.73475 -29.61484 -26.62351 -25.54984 -24.03818 -22.76906 -22.17702 -19.29090 -18.64427 -17.21776 -16.72493 -16.38304 -16.24334 -15.84672 -15.75480 -15.48041 -15.11151 -14.32176 -14.20525 -14.06571 -13.44733 -13.26613 -12.79689 -12.69559 -12.49586 -12.15447 -11.94027 -11.86958 -11.72672 -11.50033 -11.13556 -10.96766 -10.76093 -10.34863 -10.00787 -9.15609 -9.05527 -8.63528 -8.26341 -7.84715 -6.46427 -4.09486 1.02046 1.18812 2.94912 3.01308 3.15253 3.18227 3.48012 3.55340 4.06007 4.08979 4.35220 4.62901 4.78602 4.83237 4.89015 5.01148 5.14117 5.19092 5.25261 5.38235 5.57904 5.69704 5.73465 5.90927 5.93185 5.93676 6.07502 6.15901 6.19621 6.28018 6.59983 7.31402 7.49348 8.16533 8.39664 8.84082 9.18687 9.60613 10.65062 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.027980 B = 0.005217 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.473701 B = 5365.283404 C = 5811.555038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.064 3.936 3 H 0.089 0.911 4 O -0.274 6.274 5 C 0.171 3.829 6 C -0.164 4.164 7 C -0.052 4.052 8 C -0.202 4.202 9 C 0.138 3.862 10 F -0.139 7.139 11 C -0.255 4.255 12 C 0.468 3.532 13 O -0.540 6.540 14 N -0.464 5.464 15 C 0.057 3.943 16 C -0.316 4.316 17 H 0.107 0.893 18 C 0.061 3.939 19 N -0.862 5.862 20 Si 0.882 3.118 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.266 1.266 24 H 0.091 0.909 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.139 0.861 28 H 0.138 0.862 29 H 0.134 0.866 30 H 0.142 0.858 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.049 7.602 -16.848 18.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.005 3.995 3 H 0.107 0.893 4 O -0.185 6.185 5 C 0.123 3.877 6 C -0.182 4.182 7 C -0.070 4.070 8 C -0.221 4.221 9 C 0.119 3.881 10 F -0.118 7.118 11 C -0.274 4.274 12 C 0.255 3.745 13 O -0.419 6.419 14 N -0.188 5.188 15 C -0.086 4.086 16 C -0.443 4.443 17 H 0.125 0.875 18 C -0.145 4.145 19 N -0.498 5.498 20 Si 0.709 3.291 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.190 1.190 24 H 0.109 0.891 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.157 0.843 28 H 0.156 0.844 29 H 0.152 0.848 30 H 0.160 0.840 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.622 6.927 -16.626 18.372 hybrid contribution 0.056 1.595 0.210 1.610 sum -3.567 8.522 -16.416 18.837 Atomic orbital electron populations 1.22566 0.93388 1.04541 1.03832 1.22467 0.95416 0.96995 0.84666 0.89320 1.86287 1.79897 1.35666 1.16635 1.18920 0.92183 0.88974 0.87602 1.20572 1.04496 1.01942 0.91229 1.20786 0.96262 0.92482 0.97433 1.20991 1.06094 0.96834 0.98154 1.17384 0.97850 0.78274 0.94621 1.91496 1.89122 1.34087 1.97076 1.21271 1.11349 0.94937 0.99859 1.19785 0.83531 0.87852 0.83368 1.90606 1.39052 1.26817 1.85468 1.43511 1.44314 1.26218 1.04730 1.22241 0.95631 0.89125 1.01592 1.19050 1.42711 0.93769 0.88766 0.87508 1.25397 0.95396 0.98845 0.94887 1.69708 1.43360 1.37845 0.98923 0.86889 0.78333 0.84848 0.79014 1.20070 1.21215 1.19007 0.89052 0.91681 0.90689 0.84266 0.84372 0.84845 0.83995 0.92131 0.91462 0.92766 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.64 8.92 37.16 0.33 -2.31 16 2 C 0.06 1.14 1.83 -27.89 -0.05 1.09 16 3 H 0.09 1.41 5.34 -51.93 -0.28 1.14 16 4 O -0.27 -4.99 9.32 -39.33 -0.37 -5.35 16 5 C 0.17 2.55 6.63 -39.23 -0.26 2.29 16 6 C -0.16 -2.06 9.99 -39.43 -0.39 -2.45 16 7 C -0.05 -0.52 10.04 -39.61 -0.40 -0.91 16 8 C -0.20 -2.13 10.02 -39.49 -0.40 -2.53 16 9 C 0.14 1.73 7.30 -39.44 -0.29 1.45 16 10 F -0.14 -1.78 17.27 2.25 0.04 -1.74 16 11 C -0.25 -3.46 8.38 -39.37 -0.33 -3.79 16 12 C 0.47 11.00 7.11 -10.99 -0.08 10.92 16 13 O -0.54 -15.10 16.39 -14.36 -0.24 -15.33 16 14 N -0.46 -11.02 2.55 -122.20 -0.31 -11.33 16 15 C 0.06 1.06 7.47 59.85 0.45 1.51 16 16 C -0.32 -8.85 9.35 -14.94 -0.14 -8.99 16 17 H 0.11 3.37 7.95 -52.49 -0.42 2.95 16 18 C 0.06 1.66 5.34 -17.47 -0.09 1.57 16 19 N -0.86 -24.61 13.96 55.50 0.77 -23.84 16 20 Si 0.88 20.16 24.87 -169.99 -4.23 15.93 16 21 H -0.27 -5.74 6.73 56.52 0.38 -5.36 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H 0.09 1.19 4.48 -51.93 -0.23 0.95 16 25 H 0.06 0.77 7.30 -51.93 -0.38 0.39 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16 28 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 29 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.14 1.80 5.57 -52.49 -0.29 1.51 16 31 H 0.06 0.96 6.76 -51.93 -0.35 0.61 16 32 H 0.07 1.33 3.41 -51.93 -0.18 1.15 16 33 H 0.05 0.82 6.23 -51.92 -0.32 0.50 16 34 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 285.35 15.07 4.30 4.30 Total: -1.00 -32.50 285.35 -4.97 -37.47 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -3.30 Total: 2.04 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.65 Total: -2.16 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.46 Total: -35.17 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.60 Total: -20.69 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.23 Total: 15.93 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.50 -4.97 -37.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263652800.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.270 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds