Wall clock time and date at job start Mon Mar 30 2020 00:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47527 * 2 1 4 4 O 1.42901 * 109.46989 * 240.00331 * 2 1 3 5 5 C 1.35899 * 117.00317 * 87.84507 * 4 2 1 6 6 C 1.38762 * 120.04394 * 175.26965 * 5 4 2 7 7 C 1.38135 * 119.99569 * 180.02562 * 6 5 4 8 8 C 1.38257 * 120.08020 * 0.26913 * 7 6 5 9 9 C 1.38478 * 120.08158 * 359.45451 * 8 7 6 10 10 F 1.35096 * 119.99920 * 180.27070 * 9 8 7 11 11 C 1.38391 * 120.00444 * 0.55162 * 9 8 7 12 12 C 1.50697 * 109.47374 * 120.00102 * 2 1 3 13 13 O 1.21294 * 120.00042 * 119.99838 * 12 2 1 14 14 N 1.34779 * 120.00239 * 300.00314 * 12 2 1 15 15 C 1.46497 * 119.99632 * 359.97438 * 14 12 2 16 16 C 1.37089 * 120.00002 * 179.97438 * 14 12 2 17 17 H 1.07997 * 120.00365 * 320.32430 * 16 14 12 18 18 C 1.38948 * 119.99975 * 140.33157 * 16 14 12 19 19 N 1.31417 * 120.00295 * 161.47279 * 18 16 14 20 20 Si 1.86799 * 120.00090 * 341.47339 * 18 16 14 21 21 H 1.48498 * 109.47443 * 95.38718 * 20 18 16 22 22 H 1.48497 * 109.47596 * 215.38943 * 20 18 16 23 23 H 1.48499 * 109.47020 * 335.38758 * 20 18 16 24 24 H 1.09000 * 109.46775 * 299.99802 * 1 2 3 25 25 H 1.09004 * 109.47068 * 59.99556 * 1 2 3 26 26 H 1.08994 * 109.47185 * 179.97438 * 1 2 3 27 27 H 1.08003 * 120.00695 * 359.97438 * 6 5 4 28 28 H 1.08000 * 119.96282 * 179.97438 * 7 6 5 29 29 H 1.07998 * 119.96229 * 179.70256 * 8 7 6 30 30 H 1.07999 * 120.03738 * 179.74955 * 11 9 8 31 31 H 1.08998 * 109.47317 * 87.13821 * 15 14 12 32 32 H 1.09001 * 109.47094 * 207.13788 * 15 14 12 33 33 H 1.09011 * 109.47124 * 327.13782 * 15 14 12 34 34 H 0.96999 * 119.99834 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1690 0.0759 -2.2887 6 6 2.7203 -0.4910 -3.4290 7 6 2.8858 0.2719 -4.5686 8 6 2.5078 1.6018 -4.5732 9 6 1.9520 2.1693 -3.4389 10 9 1.5783 3.4675 -3.4470 11 6 1.7848 1.4083 -2.2952 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6966 1.1191 14 7 1.7068 -0.2500 2.4546 15 6 0.8649 0.9413 2.5890 16 6 2.1634 -0.8966 3.5738 17 1 2.1948 -1.9759 3.5990 18 6 2.5856 -0.1635 4.6761 19 7 2.6749 -0.7399 5.8537 20 14 3.0264 1.6416 4.4840 21 1 1.8504 2.4782 4.8335 22 1 4.1566 1.9741 5.3879 23 1 3.4226 1.9074 3.0777 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.0208 -1.5284 -3.4253 28 1 3.3153 -0.1697 -5.4557 29 1 2.6425 2.1977 -5.4638 30 1 1.3552 1.8515 -1.4090 31 1 -0.1848 0.6484 2.5711 32 1 1.0873 1.4387 3.5331 33 1 1.0660 1.6235 1.7628 34 1 2.9693 -0.2279 6.6232 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263652800.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:37 Heat of formation + Delta-G solvation = -87.298255 kcal Electronic energy + Delta-G solvation = -20266.052832 eV Core-core repulsion = 16886.270216 eV Total energy + Delta-G solvation = -3379.782616 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.95606 -41.70677 -40.31830 -38.25086 -36.84503 -34.47090 -32.91672 -31.67412 -30.62350 -28.24383 -27.36085 -25.34035 -23.78980 -23.32712 -20.91071 -19.77067 -19.18806 -18.02195 -17.84031 -17.45495 -17.12128 -16.88590 -16.62453 -16.35175 -15.85867 -15.79160 -15.12687 -14.80248 -14.66767 -14.41141 -14.14852 -13.84486 -13.61974 -13.36226 -13.09555 -12.90214 -12.71451 -12.53800 -12.31922 -12.10743 -12.00050 -11.79522 -11.08532 -10.46641 -9.95381 -9.79141 -9.30556 -8.55583 -6.25294 0.10823 0.25424 1.16771 1.29724 1.42074 1.71011 1.78595 2.13603 2.58251 2.77259 2.88239 3.15435 3.53201 3.64992 3.80471 3.89905 3.97264 4.05639 4.19412 4.29091 4.43764 4.51257 4.60604 4.63552 4.80168 4.99073 5.06089 5.10661 5.22199 5.33164 5.45156 5.71127 5.96317 6.23823 6.49631 6.83157 7.14974 7.70312 8.61125 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.027980 B = 0.005217 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.473701 B = 5365.283404 C = 5811.555038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.077 3.923 3 H 0.113 0.887 4 O -0.306 6.306 5 C 0.139 3.861 6 C -0.174 4.174 7 C -0.039 4.039 8 C -0.190 4.190 9 C 0.126 3.874 10 F -0.141 7.141 11 C -0.259 4.259 12 C 0.457 3.543 13 O -0.603 6.603 14 N -0.472 5.472 15 C 0.047 3.953 16 C -0.338 4.338 17 H 0.044 0.956 18 C 0.014 3.986 19 N -0.909 5.909 20 Si 0.954 3.046 21 H -0.231 1.231 22 H -0.289 1.289 23 H -0.259 1.259 24 H 0.107 0.893 25 H 0.095 0.905 26 H 0.059 0.941 27 H 0.140 0.860 28 H 0.177 0.823 29 H 0.163 0.837 30 H 0.149 0.851 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.814 11.172 -19.419 22.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.017 3.983 3 H 0.130 0.870 4 O -0.219 6.219 5 C 0.093 3.907 6 C -0.193 4.193 7 C -0.057 4.057 8 C -0.208 4.208 9 C 0.106 3.894 10 F -0.120 7.120 11 C -0.278 4.278 12 C 0.245 3.755 13 O -0.487 6.487 14 N -0.195 5.195 15 C -0.095 4.095 16 C -0.466 4.466 17 H 0.062 0.938 18 C -0.189 4.189 19 N -0.546 5.546 20 Si 0.776 3.224 21 H -0.156 1.156 22 H -0.216 1.216 23 H -0.183 1.183 24 H 0.126 0.874 25 H 0.114 0.886 26 H 0.079 0.921 27 H 0.158 0.842 28 H 0.194 0.806 29 H 0.181 0.819 30 H 0.167 0.833 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.436 10.526 -19.206 22.346 hybrid contribution 0.323 0.378 0.898 1.026 sum -4.113 10.905 -18.308 21.703 Atomic orbital electron populations 1.22555 0.90487 1.04387 1.06059 1.22285 0.97332 0.96497 0.82148 0.86962 1.86231 1.81057 1.37066 1.17537 1.19184 0.94536 0.89768 0.87202 1.20861 1.04323 1.02520 0.91587 1.21196 0.94824 0.92063 0.97571 1.21403 1.03934 0.97111 0.98387 1.17555 0.98508 0.78246 0.95047 1.91493 1.89226 1.34146 1.97099 1.21315 1.11437 0.94395 1.00703 1.20870 0.82415 0.87067 0.85111 1.90557 1.41747 1.29652 1.86724 1.43612 1.44851 1.27346 1.03684 1.22574 0.96381 0.87582 1.02934 1.18647 1.45003 0.91747 0.91223 0.93821 1.26226 0.94351 1.04568 0.93734 1.69831 1.44263 1.40493 1.00019 0.85768 0.79200 0.78317 0.79102 1.15566 1.21617 1.18303 0.87427 0.88636 0.92139 0.84239 0.80571 0.81920 0.83311 0.89155 0.92158 0.88523 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.64 8.92 71.98 0.64 -4.00 16 2 C 0.08 2.64 1.83 29.85 0.05 2.70 16 3 H 0.11 3.27 5.34 -2.39 -0.01 3.26 16 4 O -0.31 -11.16 9.32 -73.38 -0.68 -11.85 16 5 C 0.14 3.98 6.63 22.50 0.15 4.13 16 6 C -0.17 -4.10 9.99 22.37 0.22 -3.87 16 7 C -0.04 -0.64 10.04 22.25 0.22 -0.41 16 8 C -0.19 -3.23 10.02 22.33 0.22 -3.01 16 9 C 0.13 2.75 7.30 22.36 0.16 2.91 16 10 F -0.14 -3.14 17.27 44.97 0.78 -2.36 16 11 C -0.26 -6.39 8.38 22.41 0.19 -6.20 16 12 C 0.46 21.97 7.11 87.66 0.62 22.59 16 13 O -0.60 -35.86 16.39 15.96 0.26 -35.59 16 14 N -0.47 -22.61 2.55 -658.90 -1.68 -24.30 16 15 C 0.05 1.59 7.47 127.77 0.95 2.55 16 16 C -0.34 -19.94 9.35 84.04 0.79 -19.16 16 17 H 0.04 3.04 7.95 -2.91 -0.02 3.01 16 18 C 0.01 0.77 5.34 84.93 0.45 1.23 16 19 N -0.91 -53.75 13.96 21.66 0.30 -53.45 16 20 Si 0.95 40.77 24.87 68.60 1.71 42.48 16 21 H -0.23 -8.35 6.73 99.48 0.67 -7.68 16 22 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 23 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 24 H 0.11 2.41 4.48 -2.39 -0.01 2.40 16 25 H 0.09 1.94 7.30 -2.38 -0.02 1.92 16 26 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 28 H 0.18 1.52 8.06 -2.91 -0.02 1.49 16 29 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 30 H 0.15 3.30 5.57 -2.91 -0.02 3.28 16 31 H 0.09 2.56 6.76 -2.39 -0.02 2.54 16 32 H 0.06 2.16 3.41 -2.39 -0.01 2.15 16 33 H 0.10 2.48 6.23 -2.38 -0.01 2.46 16 34 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -77.90 285.35 6.47 -71.43 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.10 Total: 14.18 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 4.68 Total: -0.54 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -1.38 Total: -77.75 kcal Atomic # 8 Polarization: -47.02 SS G_CDS: -0.42 Total: -47.44 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.78 Total: -2.36 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 1.71 Total: 42.48 kcal Total: -77.90 6.47 -71.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263652800.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.865 kcal (2) G-P(sol) polarization free energy of solvation -77.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds