Wall clock time and date at job start Mon Mar 30 2020 00:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47119 * 2 1 4 4 O 1.42894 * 109.47300 * 120.00731 * 2 1 3 5 5 C 1.35949 * 116.99931 * 274.36108 * 4 2 1 6 6 C 1.38702 * 120.03134 * 4.06672 * 5 4 2 7 7 C 1.38149 * 119.97030 * 179.79395 * 6 5 4 8 8 C 1.38451 * 120.02892 * 0.48061 * 7 6 5 9 9 F 1.35105 * 119.96956 * 179.72284 * 8 7 6 10 10 C 1.38457 * 120.05985 * 359.75315 * 8 7 6 11 11 C 1.38147 * 120.03081 * 0.02562 * 10 8 7 12 12 C 1.50699 * 109.46576 * 240.00730 * 2 1 3 13 13 O 1.21300 * 119.99923 * 248.59684 * 12 2 1 14 14 N 1.34776 * 120.00463 * 68.59391 * 12 2 1 15 15 C 1.46502 * 119.99762 * 355.21346 * 14 12 2 16 16 C 1.37096 * 120.00344 * 175.20579 * 14 12 2 17 17 H 1.07999 * 120.00305 * 331.11489 * 16 14 12 18 18 C 1.38946 * 119.99880 * 151.10646 * 16 14 12 19 19 N 1.31408 * 120.00145 * 349.89629 * 18 16 14 20 20 Si 1.86801 * 119.99838 * 169.89869 * 18 16 14 21 21 H 1.48499 * 109.47262 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47184 * 120.00395 * 20 18 16 23 23 H 1.48504 * 109.47228 * 239.99948 * 20 18 16 24 24 H 1.08999 * 109.47487 * 182.74225 * 1 2 3 25 25 H 1.08999 * 109.46524 * 302.73952 * 1 2 3 26 26 H 1.09003 * 109.47418 * 62.73108 * 1 2 3 27 27 H 1.08007 * 120.01210 * 0.02562 * 6 5 4 28 28 H 1.07995 * 119.98494 * 180.21176 * 7 6 5 29 29 H 1.08002 * 119.98297 * 179.97438 * 10 8 7 30 30 H 1.07998 * 120.01359 * 179.97438 * 11 10 8 31 31 H 1.08998 * 109.47086 * 26.72772 * 15 14 12 32 32 H 1.09001 * 109.46784 * 146.72846 * 15 14 12 33 33 H 1.08998 * 109.46589 * 266.72724 * 15 14 12 34 34 H 0.97002 * 120.00308 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6738 1.1666 5 6 2.1253 0.0658 2.3011 6 6 1.7112 1.3895 2.3135 7 6 1.8286 2.1386 3.4683 8 6 2.3686 1.5716 4.6101 9 9 2.4881 2.3070 5.7371 10 6 2.7869 0.2518 4.5978 11 6 2.6664 -0.5010 3.4457 12 6 2.0322 -0.7103 -1.2306 13 8 2.5958 -1.7793 -1.1263 14 7 1.8552 -0.1578 -2.4471 15 6 1.0836 1.0800 -2.5841 16 6 2.3972 -0.7539 -3.5563 17 1 3.2997 -1.3405 -3.4675 18 6 1.7854 -0.6037 -4.7947 19 7 0.5902 -0.0636 -4.8759 20 14 2.6618 -1.1697 -6.3442 21 1 3.9849 -1.7399 -5.9843 22 1 1.8448 -2.2067 -7.0243 23 1 2.8521 -0.0130 -7.2559 24 1 -0.3634 -1.0265 0.0492 25 1 -0.3632 0.5558 0.8644 26 1 -0.3634 0.4708 -0.9135 27 1 1.2936 1.8333 1.4217 28 1 1.5031 3.1683 3.4791 29 1 3.2083 -0.1892 5.4890 30 1 2.9931 -1.5303 3.4363 31 1 1.1389 1.6474 -1.6551 32 1 1.4947 1.6761 -3.3989 33 1 0.0432 0.8375 -2.8004 34 1 0.1629 0.0409 -5.7404 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263663804.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:40 Heat of formation + Delta-G solvation = -78.094983 kcal Electronic energy + Delta-G solvation = -20007.648795 eV Core-core repulsion = 16628.265263 eV Total energy + Delta-G solvation = -3379.383532 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.83886 -40.29443 -38.55307 -36.88111 -34.70486 -32.40160 -31.38610 -30.68784 -29.12571 -26.33612 -25.21383 -23.80485 -23.00842 -21.93254 -19.31520 -18.34540 -17.26241 -16.99603 -16.56063 -15.81691 -15.63798 -15.16513 -14.85573 -14.71490 -14.29557 -13.89495 -13.72108 -13.55596 -13.09167 -12.78417 -12.67728 -12.29525 -11.98809 -11.68624 -11.40220 -11.35539 -11.25129 -10.97495 -10.71762 -10.66906 -10.35674 -10.31724 -9.24464 -9.11228 -8.47471 -8.00239 -7.72394 -6.39234 -4.02039 1.10519 1.21334 3.10139 3.15414 3.23030 3.31525 3.55305 3.72330 4.10956 4.27563 4.62228 4.70266 4.78947 4.97544 5.01995 5.17296 5.30322 5.38205 5.46252 5.55943 5.79464 5.90500 5.96115 6.06571 6.10598 6.12346 6.26116 6.39731 6.67985 6.69659 7.06830 7.48904 7.49955 8.06586 8.39276 9.08911 9.27781 9.84257 10.64817 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.045462 B = 0.004044 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.756460 B = 6922.127254 C = 7176.305170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.072 3.928 3 H 0.085 0.915 4 O -0.278 6.278 5 C 0.135 3.865 6 C -0.189 4.189 7 C -0.110 4.110 8 C 0.045 3.955 9 F -0.146 7.146 10 C -0.112 4.112 11 C -0.128 4.128 12 C 0.453 3.547 13 O -0.565 6.565 14 N -0.440 5.440 15 C 0.104 3.896 16 C -0.306 4.306 17 H 0.097 0.903 18 C 0.035 3.965 19 N -0.881 5.881 20 Si 0.928 3.072 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.141 0.859 28 H 0.135 0.865 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.027 0.973 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.778 6.225 12.606 14.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.013 3.987 3 H 0.102 0.898 4 O -0.190 6.190 5 C 0.088 3.912 6 C -0.207 4.207 7 C -0.129 4.129 8 C 0.025 3.975 9 F -0.125 7.125 10 C -0.131 4.131 11 C -0.147 4.147 12 C 0.239 3.761 13 O -0.447 6.447 14 N -0.161 5.161 15 C -0.040 4.040 16 C -0.434 4.434 17 H 0.115 0.885 18 C -0.169 4.169 19 N -0.520 5.520 20 Si 0.754 3.246 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.159 0.841 28 H 0.153 0.847 29 H 0.157 0.843 30 H 0.160 0.840 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.584 5.564 12.476 13.673 hybrid contribution 0.096 0.280 -0.725 0.783 sum -0.489 5.844 11.751 13.133 Atomic orbital electron populations 1.22407 0.93404 1.04149 1.03513 1.22354 0.95378 0.96528 0.84490 0.89780 1.86286 1.80121 1.36688 1.15898 1.19238 0.94122 0.90198 0.87666 1.21249 1.06034 0.93939 0.99522 1.20899 0.99771 1.00705 0.91497 1.17536 1.05992 0.90540 0.83382 1.91466 1.94505 1.76940 1.49605 1.20911 1.00794 0.92387 0.98982 1.20323 1.02636 1.01458 0.90238 1.19584 0.86041 0.86656 0.83828 1.90564 1.46391 1.22023 1.85705 1.43412 1.46845 1.21041 1.04770 1.21692 0.97874 0.86253 0.98154 1.19649 1.08111 1.31495 0.84153 0.88502 1.25413 0.95066 0.96717 0.99712 1.69932 1.12709 1.43611 1.25714 0.85835 0.79621 0.78356 0.80754 1.19138 1.20608 1.20602 0.90965 0.91956 0.89265 0.84134 0.84663 0.84307 0.84026 0.95417 0.91681 0.91362 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 8.91 37.16 0.33 -2.47 16 2 C 0.07 1.34 1.81 -27.88 -0.05 1.29 16 3 H 0.08 1.36 5.18 -51.93 -0.27 1.09 16 4 O -0.28 -5.25 9.35 -39.34 -0.37 -5.62 16 5 C 0.13 2.06 6.61 -39.24 -0.26 1.80 16 6 C -0.19 -2.46 8.32 -39.44 -0.33 -2.78 16 7 C -0.11 -1.29 10.02 -39.54 -0.40 -1.68 16 8 C 0.04 0.55 7.30 -39.42 -0.29 0.26 16 9 F -0.15 -1.81 17.27 2.25 0.04 -1.78 16 10 C -0.11 -1.30 10.02 -39.53 -0.40 -1.70 16 11 C -0.13 -1.70 9.98 -39.44 -0.39 -2.09 16 12 C 0.45 11.05 7.02 -10.99 -0.08 10.97 16 13 O -0.56 -16.14 16.32 -14.22 -0.23 -16.37 16 14 N -0.44 -10.95 3.00 -122.19 -0.37 -11.31 16 15 C 0.10 2.16 7.24 59.85 0.43 2.59 16 16 C -0.31 -8.37 9.12 -14.94 -0.14 -8.51 16 17 H 0.10 2.78 7.58 -52.49 -0.40 2.38 16 18 C 0.03 0.90 5.14 -17.47 -0.09 0.81 16 19 N -0.88 -22.76 10.94 55.50 0.61 -22.15 16 20 Si 0.93 20.32 29.56 -169.99 -5.03 15.29 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 24 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.06 0.80 7.06 -51.93 -0.37 0.43 16 26 H 0.09 1.40 5.34 -51.93 -0.28 1.12 16 27 H 0.14 1.65 5.46 -52.48 -0.29 1.36 16 28 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 29 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 30 H 0.14 1.74 8.06 -52.49 -0.42 1.31 16 31 H 0.03 0.46 5.67 -51.93 -0.29 0.16 16 32 H 0.06 1.41 7.54 -51.93 -0.39 1.02 16 33 H 0.07 1.47 6.62 -51.93 -0.34 1.12 16 34 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 LS Contribution 290.31 15.07 4.37 4.37 Total: -1.00 -31.09 290.31 -6.07 -37.16 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -3.45 Total: 1.94 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -1.65 Total: -1.53 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.24 Total: -33.46 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.60 Total: -21.99 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.29 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.09 -6.07 -37.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263663804.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.931 kcal (2) G-P(sol) polarization free energy of solvation -31.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds