Wall clock time and date at job start Mon Mar 30 2020 00:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47119 * 2 1 4 4 O 1.42894 * 109.47300 * 120.00731 * 2 1 3 5 5 C 1.35949 * 116.99931 * 274.36108 * 4 2 1 6 6 C 1.38702 * 120.03134 * 4.06672 * 5 4 2 7 7 C 1.38149 * 119.97030 * 179.79395 * 6 5 4 8 8 C 1.38451 * 120.02892 * 0.48061 * 7 6 5 9 9 F 1.35105 * 119.96956 * 179.72284 * 8 7 6 10 10 C 1.38457 * 120.05985 * 359.75315 * 8 7 6 11 11 C 1.38147 * 120.03081 * 0.02562 * 10 8 7 12 12 C 1.50699 * 109.46576 * 240.00730 * 2 1 3 13 13 O 1.21300 * 119.99923 * 248.59684 * 12 2 1 14 14 N 1.34776 * 120.00463 * 68.59391 * 12 2 1 15 15 C 1.46502 * 119.99762 * 355.21346 * 14 12 2 16 16 C 1.37096 * 120.00344 * 175.20579 * 14 12 2 17 17 H 1.07999 * 120.00305 * 331.11489 * 16 14 12 18 18 C 1.38946 * 119.99880 * 151.10646 * 16 14 12 19 19 N 1.31408 * 120.00145 * 349.89629 * 18 16 14 20 20 Si 1.86801 * 119.99838 * 169.89869 * 18 16 14 21 21 H 1.48499 * 109.47262 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47184 * 120.00395 * 20 18 16 23 23 H 1.48504 * 109.47228 * 239.99948 * 20 18 16 24 24 H 1.08999 * 109.47487 * 182.74225 * 1 2 3 25 25 H 1.08999 * 109.46524 * 302.73952 * 1 2 3 26 26 H 1.09003 * 109.47418 * 62.73108 * 1 2 3 27 27 H 1.08007 * 120.01210 * 0.02562 * 6 5 4 28 28 H 1.07995 * 119.98494 * 180.21176 * 7 6 5 29 29 H 1.08002 * 119.98297 * 179.97438 * 10 8 7 30 30 H 1.07998 * 120.01359 * 179.97438 * 11 10 8 31 31 H 1.08998 * 109.47086 * 26.72772 * 15 14 12 32 32 H 1.09001 * 109.46784 * 146.72846 * 15 14 12 33 33 H 1.08998 * 109.46589 * 266.72724 * 15 14 12 34 34 H 0.97002 * 120.00308 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6738 1.1666 5 6 2.1253 0.0658 2.3011 6 6 1.7112 1.3895 2.3135 7 6 1.8286 2.1386 3.4683 8 6 2.3686 1.5716 4.6101 9 9 2.4881 2.3070 5.7371 10 6 2.7869 0.2518 4.5978 11 6 2.6664 -0.5010 3.4457 12 6 2.0322 -0.7103 -1.2306 13 8 2.5958 -1.7793 -1.1263 14 7 1.8552 -0.1578 -2.4471 15 6 1.0836 1.0800 -2.5841 16 6 2.3972 -0.7539 -3.5563 17 1 3.2997 -1.3405 -3.4675 18 6 1.7854 -0.6037 -4.7947 19 7 0.5902 -0.0636 -4.8759 20 14 2.6618 -1.1697 -6.3442 21 1 3.9849 -1.7399 -5.9843 22 1 1.8448 -2.2067 -7.0243 23 1 2.8521 -0.0130 -7.2559 24 1 -0.3634 -1.0265 0.0492 25 1 -0.3632 0.5558 0.8644 26 1 -0.3634 0.4708 -0.9135 27 1 1.2936 1.8333 1.4217 28 1 1.5031 3.1683 3.4791 29 1 3.2083 -0.1892 5.4890 30 1 2.9931 -1.5303 3.4363 31 1 1.1389 1.6474 -1.6551 32 1 1.4947 1.6761 -3.3989 33 1 0.0432 0.8375 -2.8004 34 1 0.1629 0.0409 -5.7404 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263663804.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:40 Heat of formation + Delta-G solvation = -96.392449 kcal Electronic energy + Delta-G solvation = -20008.442233 eV Core-core repulsion = 16628.265263 eV Total energy + Delta-G solvation = -3380.176969 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.79582 -41.59586 -40.15585 -38.14707 -36.66774 -34.12610 -32.76210 -31.91215 -30.19718 -28.14808 -26.96876 -25.16739 -24.11527 -23.12276 -20.94061 -19.51901 -18.95415 -18.33186 -17.93945 -17.35597 -16.72031 -16.54191 -16.41692 -16.14013 -15.63045 -15.55122 -15.09963 -14.67479 -14.19675 -14.18549 -13.98880 -13.65073 -13.41540 -13.19012 -13.12219 -12.93236 -12.75598 -12.53490 -12.42585 -12.11651 -11.89693 -11.71760 -11.04834 -10.36317 -10.17303 -9.68385 -9.10635 -8.36347 -6.08278 0.16218 0.20196 1.35117 1.41301 1.54006 1.86405 1.89495 2.33053 2.57047 3.02689 3.09042 3.32522 3.61303 3.73122 3.83594 3.89694 3.99605 4.16212 4.32649 4.46268 4.58411 4.67398 4.72754 4.91526 4.95537 5.09663 5.13554 5.14722 5.26852 5.37823 5.41909 5.71080 6.04844 6.31370 6.49205 7.11900 7.35430 7.92495 8.65511 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.045462 B = 0.004044 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.756460 B = 6922.127254 C = 7176.305170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.085 3.915 3 H 0.113 0.887 4 O -0.310 6.310 5 C 0.104 3.896 6 C -0.186 4.186 7 C -0.104 4.104 8 C 0.041 3.959 9 F -0.146 7.146 10 C -0.105 4.105 11 C -0.137 4.137 12 C 0.436 3.564 13 O -0.622 6.622 14 N -0.451 5.451 15 C 0.110 3.890 16 C -0.347 4.347 17 H 0.067 0.933 18 C 0.005 3.995 19 N -0.891 5.891 20 Si 0.989 3.011 21 H -0.275 1.275 22 H -0.276 1.276 23 H -0.262 1.262 24 H 0.052 0.948 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.156 0.844 28 H 0.163 0.837 29 H 0.164 0.836 30 H 0.143 0.857 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.472 8.202 13.401 15.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.026 3.974 3 H 0.130 0.870 4 O -0.223 6.223 5 C 0.058 3.942 6 C -0.205 4.205 7 C -0.123 4.123 8 C 0.022 3.978 9 F -0.125 7.125 10 C -0.124 4.124 11 C -0.155 4.155 12 C 0.225 3.775 13 O -0.509 6.509 14 N -0.171 5.171 15 C -0.033 4.033 16 C -0.475 4.475 17 H 0.085 0.915 18 C -0.198 4.198 19 N -0.529 5.529 20 Si 0.812 3.188 21 H -0.200 1.200 22 H -0.202 1.202 23 H -0.187 1.187 24 H 0.071 0.929 25 H 0.118 0.882 26 H 0.110 0.890 27 H 0.174 0.826 28 H 0.181 0.819 29 H 0.182 0.818 30 H 0.161 0.839 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.309 7.589 13.281 15.352 hybrid contribution 0.319 -0.319 -0.864 0.974 sum -0.989 7.271 12.417 14.423 Atomic orbital electron populations 1.22373 0.91256 1.03686 1.05300 1.22141 0.96647 0.96435 0.82163 0.87001 1.86229 1.81172 1.38120 1.16828 1.19540 0.96297 0.91361 0.86953 1.21382 1.05621 0.92920 1.00570 1.21173 0.98707 1.01806 0.90601 1.17737 1.05727 0.90738 0.83593 1.91474 1.94471 1.76911 1.49627 1.21131 0.99938 0.92190 0.99141 1.20478 1.02723 1.01919 0.90427 1.20666 0.84910 0.86418 0.85504 1.90508 1.48773 1.24731 1.86873 1.43673 1.46713 1.22088 1.04590 1.21726 0.96499 0.84865 1.00159 1.19592 1.08475 1.33297 0.86124 0.91476 1.26106 0.95657 0.96251 1.01743 1.69985 1.13055 1.43030 1.26795 0.84947 0.78099 0.78429 0.77297 1.19973 1.20153 1.18664 0.92867 0.88174 0.89030 0.82642 0.81910 0.81836 0.83946 0.90741 0.92930 0.92108 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.06 8.91 71.98 0.64 -4.41 16 2 C 0.09 3.09 1.81 29.85 0.05 3.15 16 3 H 0.11 3.34 5.18 -2.39 -0.01 3.33 16 4 O -0.31 -11.72 9.35 -74.09 -0.69 -12.41 16 5 C 0.10 3.05 6.61 22.49 0.15 3.20 16 6 C -0.19 -4.31 8.32 22.36 0.19 -4.12 16 7 C -0.10 -2.08 10.02 22.30 0.22 -1.85 16 8 C 0.04 0.89 7.30 22.37 0.16 1.05 16 9 F -0.15 -3.18 17.27 44.97 0.78 -2.41 16 10 C -0.11 -2.21 10.02 22.30 0.22 -1.99 16 11 C -0.14 -3.50 9.98 22.36 0.22 -3.27 16 12 C 0.44 21.85 7.02 87.66 0.62 22.47 16 13 O -0.62 -37.45 16.32 15.80 0.26 -37.19 16 14 N -0.45 -22.84 3.00 -658.89 -1.97 -24.82 16 15 C 0.11 4.46 7.24 127.77 0.93 5.39 16 16 C -0.35 -19.60 9.12 84.04 0.77 -18.83 16 17 H 0.07 4.09 7.58 -2.91 -0.02 4.07 16 18 C 0.01 0.28 5.14 84.93 0.44 0.71 16 19 N -0.89 -45.67 10.94 21.66 0.24 -45.43 16 20 Si 0.99 41.76 29.56 68.60 2.03 43.79 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 22 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 24 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.10 2.23 7.06 -2.39 -0.02 2.22 16 26 H 0.09 2.69 5.34 -2.39 -0.01 2.67 16 27 H 0.16 3.03 5.46 -2.91 -0.02 3.02 16 28 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 29 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 30 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 31 H 0.07 2.27 5.67 -2.39 -0.01 2.26 16 32 H 0.05 2.24 7.54 -2.39 -0.02 2.22 16 33 H 0.06 2.56 6.62 -2.39 -0.02 2.54 16 34 H 0.28 13.16 8.31 -92.71 -0.77 12.38 16 Total: -1.00 -70.09 290.31 6.37 -63.72 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 1.13 Total: 13.28 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 4.61 Total: 1.48 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -1.74 Total: -70.25 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -0.43 Total: -49.60 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.41 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -70.09 6.37 -63.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263663804.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.676 kcal (2) G-P(sol) polarization free energy of solvation -70.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds