Wall clock time and date at job start Mon Mar 30 2020 00:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46859 * 2 1 4 4 O 1.42896 * 109.47141 * 239.99902 * 2 1 3 5 5 C 1.35950 * 117.00176 * 84.74778 * 4 2 1 6 6 C 1.38703 * 120.02964 * 173.77106 * 5 4 2 7 7 C 1.38152 * 119.96807 * 179.74236 * 6 5 4 8 8 C 1.38459 * 120.02713 * 0.53697 * 7 6 5 9 9 F 1.35100 * 119.96574 * 179.71882 * 8 7 6 10 10 C 1.38455 * 120.06190 * 359.74009 * 8 7 6 11 11 C 1.38152 * 120.02748 * 359.97438 * 10 8 7 12 12 C 1.50706 * 109.47374 * 119.99623 * 2 1 3 13 13 O 1.21290 * 119.99791 * 109.33198 * 12 2 1 14 14 N 1.34769 * 120.00003 * 289.33748 * 12 2 1 15 15 C 1.46507 * 120.00169 * 4.81849 * 14 12 2 16 16 C 1.37099 * 120.00197 * 184.81626 * 14 12 2 17 17 H 1.08001 * 119.99334 * 24.39795 * 16 14 12 18 18 C 1.38945 * 120.00622 * 204.39668 * 16 14 12 19 19 N 1.31411 * 119.99735 * 11.18392 * 18 16 14 20 20 Si 1.86799 * 120.00508 * 191.18909 * 18 16 14 21 21 H 1.48504 * 109.47157 * 94.96527 * 20 18 16 22 22 H 1.48497 * 109.47478 * 214.96824 * 20 18 16 23 23 H 1.48507 * 109.46635 * 334.96974 * 20 18 16 24 24 H 1.09008 * 109.47132 * 306.23235 * 1 2 3 25 25 H 1.08995 * 109.47583 * 66.23813 * 1 2 3 26 26 H 1.09004 * 109.47251 * 186.23551 * 1 2 3 27 27 H 1.07999 * 120.01680 * 0.02562 * 6 5 4 28 28 H 1.07999 * 119.98858 * 180.25211 * 7 6 5 29 29 H 1.07995 * 119.98471 * 179.97438 * 10 8 7 30 30 H 1.08006 * 120.01126 * 180.02562 * 11 10 8 31 31 H 1.09001 * 109.46867 * 209.82844 * 15 14 12 32 32 H 1.08999 * 109.46921 * 329.82838 * 15 14 12 33 33 H 1.09002 * 109.47145 * 89.82987 * 15 14 12 34 34 H 0.97001 * 120.00537 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.1075 0.0615 -2.3058 6 6 2.6828 -0.4917 -3.4402 7 6 2.7802 0.2547 -4.5986 8 6 2.3139 1.5581 -4.6243 9 9 2.4149 2.2888 -5.7561 10 6 1.7446 2.1135 -3.4910 11 6 1.6406 1.3673 -2.3329 12 6 2.0324 -0.7103 1.2305 13 8 2.5624 -1.7967 1.1297 14 7 1.8926 -0.1386 2.4429 15 6 1.1595 1.1226 2.5780 16 6 2.4365 -0.7372 3.5499 17 1 3.2758 -1.4084 3.4433 18 6 1.9080 -0.4804 4.8090 19 7 0.7624 0.1533 4.9239 20 14 2.8257 -1.0355 6.3384 21 1 3.6588 0.0827 6.8490 22 1 1.8497 -1.4419 7.3812 23 1 3.6983 -2.1888 6.0006 24 1 -0.3634 0.6075 0.8290 25 1 -0.3634 0.4141 -0.9405 26 1 -0.3634 -1.0216 0.1116 27 1 3.0503 -1.5070 -3.4192 28 1 3.2244 -0.1771 -5.4833 29 1 1.3816 3.1304 -3.5122 30 1 1.1961 1.8007 -1.4491 31 1 1.5626 1.6891 3.4175 32 1 1.2660 1.7045 1.6624 33 1 0.1046 0.9126 2.7544 34 1 0.3932 0.3323 5.8028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263663805.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:44 Heat of formation + Delta-G solvation = -77.955083 kcal Electronic energy + Delta-G solvation = -20005.594418 eV Core-core repulsion = 16626.216953 eV Total energy + Delta-G solvation = -3379.377465 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.84070 -40.29241 -38.54900 -36.88463 -34.71924 -32.38051 -31.39047 -30.68447 -29.13330 -26.36268 -25.19167 -23.78898 -23.02253 -21.93720 -19.30227 -18.32232 -17.26885 -17.00070 -16.57240 -15.84218 -15.63513 -15.15244 -14.84167 -14.71636 -14.27827 -13.90511 -13.72300 -13.56464 -13.10228 -12.78085 -12.66828 -12.27034 -11.99671 -11.68969 -11.39227 -11.35043 -11.30990 -10.94544 -10.71478 -10.66607 -10.38959 -10.29702 -9.24325 -9.10608 -8.47387 -8.00542 -7.78385 -6.40717 -3.98896 1.10540 1.21127 3.09585 3.15593 3.22389 3.30387 3.55598 3.72315 4.10364 4.27576 4.62145 4.70551 4.79936 4.98506 5.01824 5.16722 5.30192 5.37374 5.45586 5.56349 5.79269 5.90830 5.95039 6.06566 6.10637 6.13767 6.26475 6.39727 6.68408 6.71826 7.08191 7.48299 7.49932 8.03379 8.38643 9.08364 9.28204 9.83825 10.63544 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.044522 B = 0.004051 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.751025 B = 6910.739253 C = 7167.156711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.073 3.927 3 H 0.084 0.916 4 O -0.279 6.279 5 C 0.134 3.866 6 C -0.128 4.128 7 C -0.112 4.112 8 C 0.045 3.955 9 F -0.146 7.146 10 C -0.110 4.110 11 C -0.188 4.188 12 C 0.450 3.550 13 O -0.567 6.567 14 N -0.439 5.439 15 C 0.107 3.893 16 C -0.306 4.306 17 H 0.099 0.901 18 C 0.033 3.967 19 N -0.882 5.882 20 Si 0.929 3.071 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.268 1.268 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.142 0.858 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.073 0.927 32 H 0.025 0.975 33 H 0.061 0.939 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.914 5.973 -12.665 14.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.014 3.986 3 H 0.101 0.899 4 O -0.190 6.190 5 C 0.087 3.913 6 C -0.146 4.146 7 C -0.131 4.131 8 C 0.026 3.974 9 F -0.125 7.125 10 C -0.129 4.129 11 C -0.207 4.207 12 C 0.236 3.764 13 O -0.449 6.449 14 N -0.160 5.160 15 C -0.037 4.037 16 C -0.433 4.433 17 H 0.117 0.883 18 C -0.171 4.171 19 N -0.521 5.521 20 Si 0.756 3.244 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.192 1.192 24 H 0.104 0.896 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.160 0.840 28 H 0.157 0.843 29 H 0.153 0.847 30 H 0.159 0.841 31 H 0.092 0.908 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.728 5.318 -12.524 13.626 hybrid contribution 0.113 0.303 0.716 0.785 sum -0.615 5.621 -11.809 13.093 Atomic orbital electron populations 1.22370 0.93471 1.04452 1.03002 1.22342 0.95335 0.96471 0.84473 0.89850 1.86280 1.80166 1.37014 1.15573 1.19236 0.94088 0.90315 0.87646 1.20330 1.02356 1.01595 0.90343 1.20913 1.00709 0.92596 0.98886 1.17539 1.05694 0.90885 0.83298 1.91464 1.94728 1.77134 1.49185 1.20904 0.99736 1.00695 0.91578 1.21264 1.05629 0.94256 0.99526 1.19501 0.86222 0.86835 0.83839 1.90560 1.47701 1.21031 1.85635 1.43455 1.47778 1.19550 1.05180 1.21658 0.97780 0.85689 0.98524 1.19686 1.13172 1.27243 0.83221 0.88280 1.25372 0.95314 0.96943 0.99454 1.69967 1.16490 1.40859 1.24755 0.85858 0.79032 0.79143 0.80413 1.20341 1.20818 1.19209 0.89602 0.91835 0.90960 0.84024 0.84307 0.84659 0.84125 0.90821 0.95701 0.92022 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.77 8.81 37.15 0.33 -2.44 16 2 C 0.07 1.36 1.82 -27.88 -0.05 1.31 16 3 H 0.08 1.35 5.20 -51.93 -0.27 1.08 16 4 O -0.28 -5.26 9.36 -39.26 -0.37 -5.63 16 5 C 0.13 2.04 6.57 -39.24 -0.26 1.79 16 6 C -0.13 -1.70 9.98 -39.44 -0.39 -2.09 16 7 C -0.11 -1.30 10.02 -39.53 -0.40 -1.70 16 8 C 0.05 0.55 7.30 -39.42 -0.29 0.26 16 9 F -0.15 -1.81 17.27 2.25 0.04 -1.77 16 10 C -0.11 -1.29 10.02 -39.53 -0.40 -1.69 16 11 C -0.19 -2.44 8.19 -39.44 -0.32 -2.77 16 12 C 0.45 10.97 6.99 -10.99 -0.08 10.90 16 13 O -0.57 -16.19 16.28 -14.13 -0.23 -16.42 16 14 N -0.44 -10.94 3.01 -122.19 -0.37 -11.31 16 15 C 0.11 2.24 7.28 59.85 0.44 2.67 16 16 C -0.31 -8.35 9.22 -14.93 -0.14 -8.49 16 17 H 0.10 2.84 7.49 -52.49 -0.39 2.45 16 18 C 0.03 0.84 5.10 -17.47 -0.09 0.75 16 19 N -0.88 -22.67 10.73 55.50 0.60 -22.08 16 20 Si 0.93 20.28 29.57 -169.99 -5.03 15.25 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H 0.09 1.30 5.68 -51.92 -0.29 1.00 16 25 H 0.06 0.82 6.94 -51.93 -0.36 0.46 16 26 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 28 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 29 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 30 H 0.14 1.65 5.49 -52.48 -0.29 1.36 16 31 H 0.07 1.63 7.03 -51.93 -0.37 1.26 16 32 H 0.02 0.41 5.86 -51.93 -0.30 0.11 16 33 H 0.06 1.32 6.89 -51.93 -0.36 0.96 16 34 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 290.05 15.07 4.37 4.37 Total: -1.00 -30.97 290.05 -6.09 -37.06 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -3.46 Total: 2.01 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.65 Total: -1.49 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.23 Total: -33.39 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.60 Total: -22.04 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.25 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.97 -6.09 -37.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263663805.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.896 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds