Wall clock time and date at job start Mon Mar 30 2020 00:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46859 * 2 1 4 4 O 1.42896 * 109.47141 * 239.99902 * 2 1 3 5 5 C 1.35950 * 117.00176 * 84.74778 * 4 2 1 6 6 C 1.38703 * 120.02964 * 173.77106 * 5 4 2 7 7 C 1.38152 * 119.96807 * 179.74236 * 6 5 4 8 8 C 1.38459 * 120.02713 * 0.53697 * 7 6 5 9 9 F 1.35100 * 119.96574 * 179.71882 * 8 7 6 10 10 C 1.38455 * 120.06190 * 359.74009 * 8 7 6 11 11 C 1.38152 * 120.02748 * 359.97438 * 10 8 7 12 12 C 1.50706 * 109.47374 * 119.99623 * 2 1 3 13 13 O 1.21290 * 119.99791 * 109.33198 * 12 2 1 14 14 N 1.34769 * 120.00003 * 289.33748 * 12 2 1 15 15 C 1.46507 * 120.00169 * 4.81849 * 14 12 2 16 16 C 1.37099 * 120.00197 * 184.81626 * 14 12 2 17 17 H 1.08001 * 119.99334 * 24.39795 * 16 14 12 18 18 C 1.38945 * 120.00622 * 204.39668 * 16 14 12 19 19 N 1.31411 * 119.99735 * 11.18392 * 18 16 14 20 20 Si 1.86799 * 120.00508 * 191.18909 * 18 16 14 21 21 H 1.48504 * 109.47157 * 94.96527 * 20 18 16 22 22 H 1.48497 * 109.47478 * 214.96824 * 20 18 16 23 23 H 1.48507 * 109.46635 * 334.96974 * 20 18 16 24 24 H 1.09008 * 109.47132 * 306.23235 * 1 2 3 25 25 H 1.08995 * 109.47583 * 66.23813 * 1 2 3 26 26 H 1.09004 * 109.47251 * 186.23551 * 1 2 3 27 27 H 1.07999 * 120.01680 * 0.02562 * 6 5 4 28 28 H 1.07999 * 119.98858 * 180.25211 * 7 6 5 29 29 H 1.07995 * 119.98471 * 179.97438 * 10 8 7 30 30 H 1.08006 * 120.01126 * 180.02562 * 11 10 8 31 31 H 1.09001 * 109.46867 * 209.82844 * 15 14 12 32 32 H 1.08999 * 109.46921 * 329.82838 * 15 14 12 33 33 H 1.09002 * 109.47145 * 89.82987 * 15 14 12 34 34 H 0.97001 * 120.00537 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.1075 0.0615 -2.3058 6 6 2.6828 -0.4917 -3.4402 7 6 2.7802 0.2547 -4.5986 8 6 2.3139 1.5581 -4.6243 9 9 2.4149 2.2888 -5.7561 10 6 1.7446 2.1135 -3.4910 11 6 1.6406 1.3673 -2.3329 12 6 2.0324 -0.7103 1.2305 13 8 2.5624 -1.7967 1.1297 14 7 1.8926 -0.1386 2.4429 15 6 1.1595 1.1226 2.5780 16 6 2.4365 -0.7372 3.5499 17 1 3.2758 -1.4084 3.4433 18 6 1.9080 -0.4804 4.8090 19 7 0.7624 0.1533 4.9239 20 14 2.8257 -1.0355 6.3384 21 1 3.6588 0.0827 6.8490 22 1 1.8497 -1.4419 7.3812 23 1 3.6983 -2.1888 6.0006 24 1 -0.3634 0.6075 0.8290 25 1 -0.3634 0.4141 -0.9405 26 1 -0.3634 -1.0216 0.1116 27 1 3.0503 -1.5070 -3.4192 28 1 3.2244 -0.1771 -5.4833 29 1 1.3816 3.1304 -3.5122 30 1 1.1961 1.8007 -1.4491 31 1 1.5626 1.6891 3.4175 32 1 1.2660 1.7045 1.6624 33 1 0.1046 0.9126 2.7544 34 1 0.3932 0.3323 5.8028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263663805.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:43 Heat of formation + Delta-G solvation = -96.132382 kcal Electronic energy + Delta-G solvation = -20006.382645 eV Core-core repulsion = 16626.216953 eV Total energy + Delta-G solvation = -3380.165692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.79752 -41.59237 -40.15606 -38.15015 -36.68174 -34.10186 -32.77351 -31.90169 -30.20261 -28.18113 -26.94422 -25.15961 -24.12399 -23.12302 -20.92801 -19.49972 -18.95861 -18.33996 -17.95735 -17.36361 -16.72042 -16.52884 -16.41826 -16.11095 -15.63489 -15.55743 -15.10479 -14.67375 -14.20640 -14.17164 -13.99064 -13.65071 -13.41226 -13.18149 -13.12302 -12.95801 -12.74785 -12.53550 -12.41230 -12.14245 -11.87597 -11.73409 -11.03317 -10.36818 -10.17042 -9.74053 -9.10904 -8.37482 -6.04820 0.16198 0.19993 1.35647 1.41340 1.52945 1.84956 1.90734 2.32987 2.57200 3.03354 3.08986 3.32650 3.61451 3.73899 3.83083 3.88624 3.99287 4.15984 4.32997 4.47908 4.58597 4.65961 4.72819 4.91933 4.98311 5.08927 5.13452 5.14119 5.26934 5.37921 5.41380 5.71031 6.02185 6.31494 6.48424 7.11345 7.35961 7.92302 8.64470 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.044522 B = 0.004051 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.751025 B = 6910.739253 C = 7167.156711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.087 3.913 3 H 0.111 0.889 4 O -0.311 6.311 5 C 0.104 3.896 6 C -0.137 4.137 7 C -0.106 4.106 8 C 0.042 3.958 9 F -0.146 7.146 10 C -0.105 4.105 11 C -0.186 4.186 12 C 0.434 3.566 13 O -0.624 6.624 14 N -0.450 5.450 15 C 0.113 3.887 16 C -0.347 4.347 17 H 0.069 0.931 18 C 0.005 3.995 19 N -0.890 5.890 20 Si 0.990 3.010 21 H -0.262 1.262 22 H -0.272 1.272 23 H -0.278 1.278 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.049 0.951 27 H 0.143 0.857 28 H 0.164 0.836 29 H 0.163 0.837 30 H 0.156 0.844 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.576 8.002 -13.441 15.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.027 3.973 3 H 0.129 0.871 4 O -0.224 6.224 5 C 0.058 3.942 6 C -0.155 4.155 7 C -0.124 4.124 8 C 0.022 3.978 9 F -0.125 7.125 10 C -0.123 4.123 11 C -0.204 4.204 12 C 0.222 3.778 13 O -0.511 6.511 14 N -0.170 5.170 15 C -0.029 4.029 16 C -0.475 4.475 17 H 0.087 0.913 18 C -0.198 4.198 19 N -0.528 5.528 20 Si 0.813 3.187 21 H -0.187 1.187 22 H -0.197 1.197 23 H -0.203 1.203 24 H 0.113 0.887 25 H 0.116 0.884 26 H 0.069 0.931 27 H 0.160 0.840 28 H 0.182 0.818 29 H 0.181 0.819 30 H 0.174 0.826 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.418 7.398 -13.311 15.294 hybrid contribution 0.324 -0.309 0.854 0.964 sum -1.094 7.089 -12.457 14.374 Atomic orbital electron populations 1.22338 0.91294 1.03598 1.05189 1.22129 0.96631 0.96335 0.82163 0.87142 1.86223 1.81221 1.38451 1.16518 1.19537 0.96255 0.91502 0.86912 1.20484 1.02436 1.02047 0.90551 1.21132 0.99914 0.92363 0.99016 1.17739 1.05446 0.91064 0.83502 1.91472 1.94695 1.77103 1.49206 1.21178 0.98740 1.01732 0.90678 1.21394 1.05206 0.93247 1.00561 1.20578 0.85097 0.86602 0.85488 1.90504 1.50064 1.23729 1.86800 1.43713 1.47612 1.20628 1.05007 1.21688 0.96660 0.84293 1.00292 1.19620 1.13924 1.28798 0.85178 0.91310 1.26066 0.95923 0.96479 1.01358 1.70019 1.16713 1.40275 1.25815 0.84974 0.78021 0.78698 0.76998 1.18730 1.19716 1.20337 0.88728 0.88385 0.93149 0.83956 0.81838 0.81910 0.82650 0.92325 0.91084 0.92510 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.99 8.81 71.98 0.63 -4.36 16 2 C 0.09 3.15 1.82 29.85 0.05 3.20 16 3 H 0.11 3.32 5.20 -2.39 -0.01 3.31 16 4 O -0.31 -11.76 9.36 -74.17 -0.69 -12.45 16 5 C 0.10 3.03 6.57 22.49 0.15 3.18 16 6 C -0.14 -3.49 9.98 22.36 0.22 -3.27 16 7 C -0.11 -2.22 10.02 22.30 0.22 -1.99 16 8 C 0.04 0.90 7.30 22.37 0.16 1.06 16 9 F -0.15 -3.18 17.27 44.97 0.78 -2.40 16 10 C -0.10 -2.09 10.02 22.30 0.22 -1.86 16 11 C -0.19 -4.29 8.19 22.36 0.18 -4.11 16 12 C 0.43 21.73 6.99 87.66 0.61 22.35 16 13 O -0.62 -37.56 16.28 15.75 0.26 -37.31 16 14 N -0.45 -22.84 3.01 -658.88 -1.99 -24.82 16 15 C 0.11 4.62 7.28 127.77 0.93 5.55 16 16 C -0.35 -19.62 9.22 84.04 0.77 -18.85 16 17 H 0.07 4.20 7.49 -2.91 -0.02 4.18 16 18 C 0.00 0.23 5.10 84.93 0.43 0.67 16 19 N -0.89 -45.36 10.73 21.66 0.23 -45.12 16 20 Si 0.99 41.64 29.57 68.60 2.03 43.67 16 21 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 22 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 24 H 0.09 2.64 5.68 -2.38 -0.01 2.63 16 25 H 0.10 2.25 6.94 -2.39 -0.02 2.23 16 26 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 28 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 29 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 30 H 0.16 3.04 5.49 -2.91 -0.02 3.03 16 31 H 0.06 2.55 7.03 -2.39 -0.02 2.53 16 32 H 0.07 2.19 5.86 -2.39 -0.01 2.18 16 33 H 0.06 2.36 6.89 -2.39 -0.02 2.34 16 34 H 0.28 13.11 8.31 -92.71 -0.77 12.34 16 Total: -1.00 -69.82 290.05 6.35 -63.46 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 1.13 Total: 13.41 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 4.60 Total: 1.57 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: -1.75 Total: -69.95 kcal Atomic # 8 Polarization: -49.32 SS G_CDS: -0.44 Total: -49.76 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -69.82 6.35 -63.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263663805.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.670 kcal (2) G-P(sol) polarization free energy of solvation -69.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds