Wall clock time and date at job start Mon Mar 30 2020 00:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 116.99962 * 2 1 4 4 O 1.20817 * 120.00184 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99742 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47493 * 300.00100 * 5 3 2 7 7 C 1.50702 * 109.46930 * 60.00154 * 5 3 2 8 8 C 1.38241 * 119.97601 * 47.18357 * 7 5 3 9 9 C 1.38200 * 120.02433 * 179.97438 * 8 7 5 10 10 C 1.38458 * 119.97776 * 0.02562 * 9 8 7 11 11 F 1.35098 * 120.02608 * 179.97438 * 10 9 8 12 12 C 1.38460 * 119.94476 * 0.25244 * 10 9 8 13 13 C 1.38199 * 119.97370 * 359.46813 * 12 10 9 14 14 N 1.46501 * 109.47225 * 179.97438 * 5 3 2 15 15 C 1.46501 * 119.99840 * 294.85706 * 14 5 3 16 16 C 1.36930 * 120.00362 * 114.85377 * 14 5 3 17 17 H 1.08001 * 120.00048 * 326.81773 * 16 14 5 18 18 C 1.38814 * 120.00314 * 146.82256 * 16 14 5 19 19 N 1.31618 * 120.00161 * 144.30508 * 18 16 14 20 20 Si 1.86803 * 119.99747 * 324.30133 * 18 16 14 21 21 H 1.48497 * 109.46748 * 90.08216 * 20 18 16 22 22 H 1.48491 * 109.47127 * 210.08351 * 20 18 16 23 23 H 1.48496 * 109.46987 * 330.08267 * 20 18 16 24 24 H 1.08997 * 109.47260 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47345 * 300.00621 * 1 2 3 26 26 H 1.09004 * 109.46878 * 59.99967 * 1 2 3 27 27 H 1.08003 * 119.98740 * 0.02562 * 8 7 5 28 28 H 1.08001 * 120.00964 * 180.02562 * 9 8 7 29 29 H 1.08001 * 120.01098 * 179.74358 * 12 10 9 30 30 H 1.08002 * 119.98457 * 180.29442 * 13 12 10 31 31 H 1.09001 * 109.47633 * 84.46293 * 15 14 5 32 32 H 1.09000 * 109.47417 * 204.46290 * 15 14 5 33 33 H 1.09006 * 109.47367 * 324.45950 * 15 14 5 34 34 H 0.97001 * 120.00068 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9557 0.7808 0.8908 7 6 4.1055 0.5914 -1.2296 8 6 3.5540 0.8622 -2.4679 9 6 4.0481 0.2364 -3.5968 10 6 5.0955 -0.6624 -3.4870 11 9 5.5790 -1.2750 -4.5898 12 6 5.6433 -0.9371 -2.2454 13 6 5.1515 -0.3058 -1.1188 14 7 3.9818 2.6797 -0.0002 15 6 3.6785 3.5326 -1.1521 16 6 4.6534 3.1956 1.0758 17 1 4.4382 2.8345 2.0706 18 6 5.6109 4.1830 0.8880 19 7 5.7522 5.1409 1.7795 20 14 6.6991 4.1520 -0.6301 21 1 6.0502 4.9242 -1.7200 22 1 8.0151 4.7599 -0.3083 23 1 6.8968 2.7471 -1.0688 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 2.7372 1.5636 -2.5534 28 1 3.6173 0.4485 -4.5642 29 1 6.4577 -1.6411 -2.1581 30 1 5.5818 -0.5164 -0.1508 31 1 2.6688 3.9312 -1.0533 32 1 4.3917 4.3559 -1.1924 33 1 3.7494 2.9454 -2.0677 34 1 6.4215 5.8306 1.6484 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263925506.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:50 Heat of formation + Delta-G solvation = -65.415623 kcal Electronic energy + Delta-G solvation = -20787.548767 eV Core-core repulsion = 17408.715053 eV Total energy + Delta-G solvation = -3378.833714 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.72941 -40.24338 -38.73833 -36.38275 -35.23678 -32.36302 -31.05087 -30.54970 -28.09824 -26.75453 -25.76268 -22.88011 -22.33269 -21.90810 -19.77644 -17.59224 -17.28036 -17.04192 -16.34728 -16.07716 -15.74645 -15.42646 -15.25613 -14.98400 -13.99650 -13.92752 -13.43203 -13.29985 -12.96657 -12.72715 -12.69480 -12.29570 -12.15124 -11.85354 -11.58061 -11.42800 -10.89774 -10.78979 -10.66516 -10.40175 -10.12718 -9.97109 -9.77005 -8.86657 -8.65125 -8.31322 -7.16828 -6.25304 -3.49513 1.32459 1.44198 2.77645 3.12632 3.28314 3.41978 3.49184 3.76721 4.41271 4.43565 4.82933 4.89649 5.01815 5.04905 5.13536 5.30441 5.37220 5.40666 5.46065 5.58537 5.76155 5.86321 6.12018 6.16752 6.23704 6.28704 6.41939 6.65480 6.72980 6.78315 6.95155 7.08266 7.74784 8.07903 8.36554 8.73667 9.48762 9.84299 10.88294 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.013869 B = 0.009659 C = 0.006390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.389444 B = 2898.068666 C = 4380.805066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.438 3.562 4 O -0.492 6.492 5 C 0.218 3.782 6 H 0.120 0.880 7 C -0.086 4.086 8 C -0.087 4.087 9 C -0.153 4.153 10 C 0.083 3.917 11 F -0.147 7.147 12 C -0.153 4.153 13 C -0.069 4.069 14 N -0.561 5.561 15 C 0.096 3.904 16 C -0.290 4.290 17 H 0.083 0.917 18 C 0.056 3.944 19 N -0.865 5.865 20 Si 0.853 3.147 21 H -0.281 1.281 22 H -0.295 1.295 23 H -0.265 1.265 24 H 0.093 0.907 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.035 0.965 32 H 0.057 0.943 33 H 0.035 0.965 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.658 -12.071 -7.408 14.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.282 6.282 3 C 0.277 3.723 4 O -0.376 6.376 5 C 0.107 3.893 6 H 0.137 0.863 7 C -0.089 4.089 8 C -0.106 4.106 9 C -0.172 4.172 10 C 0.064 3.936 11 F -0.126 7.126 12 C -0.172 4.172 13 C -0.088 4.088 14 N -0.280 5.280 15 C -0.048 4.048 16 C -0.416 4.416 17 H 0.101 0.899 18 C -0.148 4.148 19 N -0.502 5.502 20 Si 0.680 3.320 21 H -0.208 1.208 22 H -0.223 1.223 23 H -0.190 1.190 24 H 0.111 0.889 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.154 0.846 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.774 -11.539 -7.322 14.476 hybrid contribution 0.580 0.162 -1.077 1.234 sum -4.194 -11.377 -8.400 14.750 Atomic orbital electron populations 1.23114 0.78130 1.02734 1.02022 1.86596 1.22135 1.34865 1.84592 1.25839 0.93531 0.80950 0.72014 1.90609 1.66743 1.36322 1.43972 1.18943 0.85476 0.88315 0.96536 0.86284 1.20282 0.97239 0.95877 0.95509 1.20940 0.99859 0.98176 0.91608 1.21004 0.97718 0.98579 0.99904 1.17651 0.96656 0.96509 0.82809 1.91456 1.87365 1.81669 1.52093 1.21060 1.01982 1.02901 0.91236 1.20867 0.94940 0.94480 0.98542 1.43973 1.62890 1.02020 1.19101 1.21682 0.99991 0.94513 0.88618 1.18668 1.16800 1.20053 0.86121 0.89901 1.25278 0.97413 0.95619 0.96527 1.70070 1.32906 1.09775 1.37446 0.87377 0.81163 0.79071 0.84421 1.20827 1.22252 1.18980 0.88886 0.92372 0.92558 0.85368 0.85164 0.84951 0.84568 0.94708 0.92416 0.94692 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -5.87 10.48 -39.26 -0.41 -6.28 16 3 C 0.44 8.30 6.25 36.00 0.22 8.53 16 4 O -0.49 -10.70 14.70 -18.74 -0.28 -10.98 16 5 C 0.22 4.23 2.93 -70.23 -0.21 4.03 16 6 H 0.12 2.17 7.69 -51.93 -0.40 1.77 16 7 C -0.09 -1.48 4.79 -104.62 -0.50 -1.99 16 8 C -0.09 -1.41 7.09 -39.59 -0.28 -1.69 16 9 C -0.15 -2.25 10.03 -39.51 -0.40 -2.64 16 10 C 0.08 1.24 7.30 -39.42 -0.29 0.95 16 11 F -0.15 -2.16 17.27 2.25 0.04 -2.12 16 12 C -0.15 -2.19 10.03 -39.51 -0.40 -2.58 16 13 C -0.07 -1.07 9.66 -39.59 -0.38 -1.45 16 14 N -0.56 -13.11 2.13 -176.15 -0.38 -13.49 16 15 C 0.10 2.16 8.43 59.85 0.50 2.66 16 16 C -0.29 -7.78 9.72 -15.06 -0.15 -7.92 16 17 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 18 C 0.06 1.55 4.99 -17.43 -0.09 1.46 16 19 N -0.87 -25.25 13.97 55.49 0.78 -24.47 16 20 Si 0.85 21.04 26.04 -169.99 -4.43 16.62 16 21 H -0.28 -6.82 6.42 56.52 0.36 -6.46 16 22 H -0.30 -7.36 7.11 56.52 0.40 -6.95 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 26 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 27 H 0.13 2.07 6.47 -52.48 -0.34 1.73 16 28 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.14 1.84 7.99 -52.49 -0.42 1.42 16 31 H 0.03 0.80 7.16 -51.93 -0.37 0.42 16 32 H 0.06 1.39 3.93 -51.93 -0.20 1.18 16 33 H 0.03 0.70 4.48 -51.93 -0.23 0.46 16 34 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 291.62 15.07 4.39 4.39 Total: -1.00 -30.87 291.62 -4.84 -35.71 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -3.68 Total: -0.24 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -0.89 Total: 0.85 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.40 Total: -37.96 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.69 Total: -17.26 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.43 Total: 16.62 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.87 -4.84 -35.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263925506.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.702 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds