Wall clock time and date at job start Mon Mar 30 2020 00:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 116.99962 * 2 1 4 4 O 1.20817 * 120.00184 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99742 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47493 * 300.00100 * 5 3 2 7 7 C 1.50702 * 109.46930 * 60.00154 * 5 3 2 8 8 C 1.38241 * 119.97601 * 47.18357 * 7 5 3 9 9 C 1.38200 * 120.02433 * 179.97438 * 8 7 5 10 10 C 1.38458 * 119.97776 * 0.02562 * 9 8 7 11 11 F 1.35098 * 120.02608 * 179.97438 * 10 9 8 12 12 C 1.38460 * 119.94476 * 0.25244 * 10 9 8 13 13 C 1.38199 * 119.97370 * 359.46813 * 12 10 9 14 14 N 1.46501 * 109.47225 * 179.97438 * 5 3 2 15 15 C 1.46501 * 119.99840 * 294.85706 * 14 5 3 16 16 C 1.36930 * 120.00362 * 114.85377 * 14 5 3 17 17 H 1.08001 * 120.00048 * 326.81773 * 16 14 5 18 18 C 1.38814 * 120.00314 * 146.82256 * 16 14 5 19 19 N 1.31618 * 120.00161 * 144.30508 * 18 16 14 20 20 Si 1.86803 * 119.99747 * 324.30133 * 18 16 14 21 21 H 1.48497 * 109.46748 * 90.08216 * 20 18 16 22 22 H 1.48491 * 109.47127 * 210.08351 * 20 18 16 23 23 H 1.48496 * 109.46987 * 330.08267 * 20 18 16 24 24 H 1.08997 * 109.47260 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47345 * 300.00621 * 1 2 3 26 26 H 1.09004 * 109.46878 * 59.99967 * 1 2 3 27 27 H 1.08003 * 119.98740 * 0.02562 * 8 7 5 28 28 H 1.08001 * 120.00964 * 180.02562 * 9 8 7 29 29 H 1.08001 * 120.01098 * 179.74358 * 12 10 9 30 30 H 1.08002 * 119.98457 * 180.29442 * 13 12 10 31 31 H 1.09001 * 109.47633 * 84.46293 * 15 14 5 32 32 H 1.09000 * 109.47417 * 204.46290 * 15 14 5 33 33 H 1.09006 * 109.47367 * 324.45950 * 15 14 5 34 34 H 0.97001 * 120.00068 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9557 0.7808 0.8908 7 6 4.1055 0.5914 -1.2296 8 6 3.5540 0.8622 -2.4679 9 6 4.0481 0.2364 -3.5968 10 6 5.0955 -0.6624 -3.4870 11 9 5.5790 -1.2750 -4.5898 12 6 5.6433 -0.9371 -2.2454 13 6 5.1515 -0.3058 -1.1188 14 7 3.9818 2.6797 -0.0002 15 6 3.6785 3.5326 -1.1521 16 6 4.6534 3.1956 1.0758 17 1 4.4382 2.8345 2.0706 18 6 5.6109 4.1830 0.8880 19 7 5.7522 5.1409 1.7795 20 14 6.6991 4.1520 -0.6301 21 1 6.0502 4.9242 -1.7200 22 1 8.0151 4.7599 -0.3083 23 1 6.8968 2.7471 -1.0688 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 2.7372 1.5636 -2.5534 28 1 3.6173 0.4485 -4.5642 29 1 6.4577 -1.6411 -2.1581 30 1 5.5818 -0.5164 -0.1508 31 1 2.6688 3.9312 -1.0533 32 1 4.3917 4.3559 -1.1924 33 1 3.7494 2.9454 -2.0677 34 1 6.4215 5.8306 1.6484 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263925506.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:49 Heat of formation + Delta-G solvation = -83.463520 kcal Electronic energy + Delta-G solvation = -20788.331382 eV Core-core repulsion = 17408.715053 eV Total energy + Delta-G solvation = -3379.616329 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.87603 -41.69278 -40.01641 -37.89538 -36.86553 -34.21204 -32.32914 -32.05840 -29.37636 -28.23431 -27.46268 -24.23977 -23.91570 -23.18543 -21.25582 -19.12375 -18.79653 -18.52357 -17.72363 -17.53322 -17.15047 -16.88378 -16.56871 -16.47603 -15.44641 -15.33811 -14.84706 -14.52581 -14.49476 -14.25334 -14.21036 -14.02107 -13.56807 -13.13544 -13.07004 -12.83768 -12.59333 -12.45434 -12.15745 -11.91235 -11.72587 -11.69300 -11.51066 -10.63077 -10.03516 -9.59772 -9.05709 -8.34233 -5.57058 0.10586 0.27761 1.27394 1.31533 1.42493 1.53797 1.80250 2.39378 2.53136 2.88638 3.26876 3.37925 3.66628 3.73319 3.95747 4.10787 4.21201 4.35337 4.36526 4.39950 4.49906 4.55646 4.71753 4.81964 4.92132 4.98681 5.04009 5.13103 5.24395 5.43555 5.53452 5.77577 5.90885 6.04633 6.71124 6.93461 7.47864 7.87968 8.84081 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.013869 B = 0.009659 C = 0.006390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.389444 B = 2898.068666 C = 4380.805066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.447 3.553 4 O -0.526 6.526 5 C 0.217 3.783 6 H 0.124 0.876 7 C -0.101 4.101 8 C -0.095 4.095 9 C -0.150 4.150 10 C 0.083 3.917 11 F -0.144 7.144 12 C -0.147 4.147 13 C -0.073 4.073 14 N -0.576 5.576 15 C 0.101 3.899 16 C -0.284 4.284 17 H 0.052 0.948 18 C 0.009 3.991 19 N -0.915 5.915 20 Si 0.914 3.086 21 H -0.275 1.275 22 H -0.300 1.300 23 H -0.256 1.256 24 H 0.134 0.866 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.125 0.875 28 H 0.154 0.846 29 H 0.161 0.839 30 H 0.152 0.848 31 H 0.022 0.978 32 H 0.040 0.960 33 H 0.062 0.938 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.512 -14.415 -9.501 17.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.287 3.713 4 O -0.414 6.414 5 C 0.107 3.893 6 H 0.142 0.858 7 C -0.104 4.104 8 C -0.113 4.113 9 C -0.168 4.168 10 C 0.063 3.937 11 F -0.123 7.123 12 C -0.166 4.166 13 C -0.092 4.092 14 N -0.297 5.297 15 C -0.043 4.043 16 C -0.413 4.413 17 H 0.070 0.930 18 C -0.192 4.192 19 N -0.556 5.556 20 Si 0.740 3.260 21 H -0.202 1.202 22 H -0.227 1.227 23 H -0.180 1.180 24 H 0.152 0.848 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.143 0.857 28 H 0.172 0.828 29 H 0.178 0.822 30 H 0.170 0.830 31 H 0.040 0.960 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.646 -13.955 -9.452 17.484 hybrid contribution 0.362 0.681 -0.446 0.891 sum -4.284 -13.274 -9.899 17.104 Atomic orbital electron populations 1.23488 0.75658 1.05452 1.02026 1.86553 1.24394 1.32878 1.83824 1.25467 0.93353 0.81235 0.71204 1.90603 1.67426 1.37577 1.45799 1.19038 0.85623 0.86388 0.98246 0.85798 1.20105 0.98346 0.97384 0.94546 1.20956 1.00039 0.98548 0.91788 1.21210 0.97388 0.97819 1.00415 1.17826 0.96479 0.96216 0.83139 1.91473 1.87274 1.81540 1.51973 1.21349 1.02184 1.02601 0.90450 1.21096 0.94212 0.93966 0.99885 1.43836 1.63127 1.04150 1.18550 1.21626 0.98622 0.94399 0.89648 1.18554 1.16474 1.19987 0.86238 0.92996 1.25762 0.98681 0.95414 0.99307 1.70162 1.34225 1.11016 1.40156 0.86384 0.78942 0.79342 0.81313 1.20233 1.22737 1.17952 0.84788 0.92762 0.92283 0.85708 0.82791 0.82168 0.83024 0.95969 0.94195 0.91977 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.82 16 2 O -0.36 -10.96 10.48 -51.41 -0.54 -11.50 16 3 C 0.45 16.66 6.25 71.24 0.45 17.11 16 4 O -0.53 -22.99 14.70 21.99 0.32 -22.67 16 5 C 0.22 8.25 2.93 43.50 0.13 8.38 16 6 H 0.12 4.49 7.69 -2.38 -0.02 4.48 16 7 C -0.10 -3.28 4.79 -19.86 -0.10 -3.37 16 8 C -0.09 -2.83 7.09 22.26 0.16 -2.67 16 9 C -0.15 -3.87 10.03 22.31 0.22 -3.64 16 10 C 0.08 2.15 7.30 22.38 0.16 2.31 16 11 F -0.14 -3.66 17.27 44.97 0.78 -2.88 16 12 C -0.15 -3.62 10.03 22.31 0.22 -3.40 16 13 C -0.07 -2.03 9.66 22.26 0.22 -1.81 16 14 N -0.58 -26.98 2.13 -711.20 -1.51 -28.49 16 15 C 0.10 4.52 8.43 127.77 1.08 5.59 16 16 C -0.28 -15.64 9.72 84.03 0.82 -14.83 16 17 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 18 C 0.01 0.49 4.99 84.86 0.42 0.91 16 19 N -0.92 -55.16 13.97 21.65 0.30 -54.85 16 20 Si 0.91 43.79 26.04 68.60 1.79 45.58 16 21 H -0.28 -12.83 6.42 99.48 0.64 -12.19 16 22 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 23 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 24 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.05 1.29 8.13 -2.39 -0.02 1.27 16 26 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 27 H 0.13 3.79 6.47 -2.91 -0.02 3.77 16 28 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 29 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 30 H 0.15 3.67 7.99 -2.91 -0.02 3.64 16 31 H 0.02 1.03 7.16 -2.39 -0.02 1.01 16 32 H 0.04 1.90 3.93 -2.39 -0.01 1.90 16 33 H 0.06 2.39 4.48 -2.38 -0.01 2.38 16 34 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -67.16 291.62 7.17 -59.99 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 1.06 Total: 8.43 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 4.98 Total: 6.39 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -1.21 Total: -83.35 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -0.22 Total: -34.17 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.78 Total: -2.88 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.79 Total: 45.58 kcal Total: -67.16 7.17 -59.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263925506.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.472 kcal (2) G-P(sol) polarization free energy of solvation -67.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds