Wall clock time and date at job start Mon Mar 30 2020 00:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34225 * 116.99871 * 2 1 4 4 O 1.20821 * 120.00131 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99793 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.47058 * 59.99754 * 5 3 2 7 7 C 1.50702 * 109.47154 * 299.99995 * 5 3 2 8 8 C 1.38243 * 119.97474 * 112.15766 * 7 5 3 9 9 C 1.38199 * 120.02285 * 179.97438 * 8 7 5 10 10 C 1.38455 * 119.97757 * 0.23952 * 9 8 7 11 11 F 1.35103 * 120.02632 * 179.72742 * 10 9 8 12 12 C 1.38463 * 119.94682 * 359.48712 * 10 9 8 13 13 C 1.38199 * 119.97343 * 0.53425 * 12 10 9 14 14 N 1.46494 * 109.47235 * 179.97438 * 5 3 2 15 15 C 1.46504 * 120.00034 * 54.71514 * 14 5 3 16 16 C 1.36939 * 120.00307 * 234.71637 * 14 5 3 17 17 H 1.08004 * 119.99797 * 21.08922 * 16 14 5 18 18 C 1.38814 * 120.00187 * 201.08853 * 16 14 5 19 19 N 1.31614 * 119.99675 * 15.01027 * 18 16 14 20 20 Si 1.86802 * 119.99862 * 195.01195 * 18 16 14 21 21 H 1.48503 * 109.46854 * 94.97955 * 20 18 16 22 22 H 1.48496 * 109.47015 * 214.98139 * 20 18 16 23 23 H 1.48503 * 109.47101 * 334.98110 * 20 18 16 24 24 H 1.08991 * 109.47262 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46976 * 300.00302 * 1 2 3 26 26 H 1.08998 * 109.47187 * 60.00057 * 1 2 3 27 27 H 1.08004 * 119.98965 * 359.97438 * 8 7 5 28 28 H 1.08003 * 120.01035 * 179.97438 * 9 8 7 29 29 H 1.08003 * 120.01265 * 180.25498 * 12 10 9 30 30 H 1.07993 * 119.98979 * 179.74601 * 13 12 10 31 31 H 1.09004 * 109.46668 * 94.96875 * 15 14 5 32 32 H 1.08999 * 109.47262 * 214.97165 * 15 14 5 33 33 H 1.09003 * 109.47246 * 334.97724 * 15 14 5 34 34 H 0.97007 * 119.99339 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9558 0.7808 -0.8908 7 6 4.1057 0.5914 1.2295 8 6 4.8242 -0.5834 1.1080 9 6 5.3197 -1.2107 2.2354 10 6 5.0920 -0.6647 3.4872 11 9 5.5713 -1.2800 4.5904 12 6 4.3772 0.5150 3.6073 13 6 3.8822 1.1403 2.4786 14 7 3.9818 2.6796 -0.0011 15 6 3.4871 3.5902 1.0346 16 6 4.8325 3.1418 -0.9696 17 1 4.9317 2.6056 -1.9018 18 6 5.5673 4.2994 -0.7531 19 7 5.6814 4.7886 0.4634 20 14 6.3942 5.1629 -2.1885 21 1 5.5083 6.2426 -2.6934 22 1 7.6820 5.7492 -1.7381 23 1 6.6494 4.1833 -3.2750 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 4.9983 -1.0112 0.1317 28 1 5.8806 -2.1287 2.1403 29 1 4.2025 0.9440 4.5829 30 1 3.3211 2.0582 2.5722 31 1 4.2126 3.6457 1.8462 32 1 3.3431 4.5825 0.6073 33 1 2.5376 3.2196 1.4209 34 1 6.1946 5.5978 0.6146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263925507.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:53 Heat of formation + Delta-G solvation = -67.802079 kcal Electronic energy + Delta-G solvation = -20677.384276 eV Core-core repulsion = 17298.447078 eV Total energy + Delta-G solvation = -3378.937198 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.56737 -40.16063 -38.56223 -36.33396 -35.10245 -32.22714 -30.84337 -29.84484 -27.96663 -26.52608 -25.74384 -22.59467 -22.18728 -21.79163 -19.80055 -17.51028 -17.20328 -16.77036 -16.10917 -16.04485 -15.70024 -15.27738 -15.22806 -14.49452 -13.88062 -13.59044 -13.44008 -13.14230 -12.82281 -12.79721 -12.42020 -12.05872 -11.72626 -11.57474 -11.19748 -10.92483 -10.89505 -10.78895 -10.41927 -10.29156 -10.17435 -10.02753 -9.66709 -8.72511 -8.64324 -8.14264 -7.04056 -5.89246 -3.34821 1.52538 1.65973 2.81566 3.16421 3.33619 3.39541 3.40311 3.98719 4.40214 4.62098 5.07617 5.14796 5.21134 5.29192 5.33030 5.38145 5.39589 5.54472 5.69188 5.70288 5.82987 5.97401 6.30856 6.37321 6.48061 6.64778 6.69412 6.88279 6.98872 7.27990 7.35909 7.57711 7.68973 8.13318 8.39697 9.01880 9.61461 10.07264 11.14717 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.015005 B = 0.007742 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.656330 B = 3615.893898 C = 4807.629339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.365 6.365 3 C 0.440 3.560 4 O -0.494 6.494 5 C 0.222 3.778 6 H 0.111 0.889 7 C -0.083 4.083 8 C -0.078 4.078 9 C -0.156 4.156 10 C 0.080 3.920 11 F -0.150 7.150 12 C -0.153 4.153 13 C -0.079 4.079 14 N -0.558 5.558 15 C 0.154 3.846 16 C -0.270 4.270 17 H 0.075 0.925 18 C 0.012 3.988 19 N -0.894 5.894 20 Si 0.912 3.088 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.277 1.277 24 H 0.092 0.908 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.131 0.869 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.139 0.861 31 H 0.036 0.964 32 H 0.048 0.952 33 H 0.017 0.983 34 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.213 -10.790 2.413 12.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.282 6.282 3 C 0.279 3.721 4 O -0.379 6.379 5 C 0.110 3.890 6 H 0.129 0.871 7 C -0.087 4.087 8 C -0.096 4.096 9 C -0.175 4.175 10 C 0.061 3.939 11 F -0.128 7.128 12 C -0.172 4.172 13 C -0.097 4.097 14 N -0.276 5.276 15 C 0.010 3.990 16 C -0.399 4.399 17 H 0.093 0.907 18 C -0.188 4.188 19 N -0.536 5.536 20 Si 0.741 3.259 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.202 1.202 24 H 0.111 0.889 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.149 0.851 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.156 0.844 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.322 -10.259 2.494 11.823 hybrid contribution 0.403 0.589 -0.429 0.833 sum -4.919 -9.670 2.065 11.044 Atomic orbital electron populations 1.23112 0.78217 1.02705 1.01990 1.86601 1.22093 1.34924 1.84542 1.25875 0.93507 0.80899 0.71801 1.90598 1.66818 1.36282 1.44213 1.18748 0.85204 0.88823 0.96266 0.87143 1.20449 0.98884 0.94105 0.95254 1.20806 0.96526 0.94200 0.98116 1.20971 1.03555 1.01802 0.91178 1.17668 0.99768 0.93828 0.82632 1.91443 1.86659 1.82510 1.52230 1.21049 1.00856 0.95210 1.00068 1.21276 0.98235 0.99069 0.91131 1.43869 1.51066 1.00846 1.31795 1.21104 0.93394 0.93108 0.91344 1.19259 1.17934 1.08700 0.93990 0.90680 1.25006 0.97790 0.99495 0.96509 1.70109 1.42219 1.22755 1.18522 0.86131 0.78488 0.79767 0.81485 1.21246 1.21559 1.20172 0.88912 0.92522 0.92453 0.85126 0.85300 0.85355 0.84383 0.94576 0.93375 0.96471 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 101.05 1.07 1.50 16 2 O -0.37 -6.00 10.48 -39.24 -0.41 -6.41 16 3 C 0.44 8.57 6.77 36.01 0.24 8.81 16 4 O -0.49 -10.90 13.90 -18.75 -0.26 -11.16 16 5 C 0.22 4.49 2.94 -70.23 -0.21 4.28 16 6 H 0.11 2.07 7.60 -51.93 -0.39 1.67 16 7 C -0.08 -1.54 4.88 -104.62 -0.51 -2.06 16 8 C -0.08 -1.23 9.67 -39.59 -0.38 -1.61 16 9 C -0.16 -2.35 10.03 -39.52 -0.40 -2.74 16 10 C 0.08 1.30 7.30 -39.42 -0.29 1.01 16 11 F -0.15 -2.36 17.27 2.25 0.04 -2.33 16 12 C -0.15 -2.54 10.03 -39.51 -0.40 -2.94 16 13 C -0.08 -1.45 8.49 -39.59 -0.34 -1.79 16 14 N -0.56 -13.63 2.63 -176.14 -0.46 -14.10 16 15 C 0.15 3.79 6.21 59.85 0.37 4.16 16 16 C -0.27 -7.15 9.61 -15.06 -0.14 -7.29 16 17 H 0.08 1.90 7.80 -52.48 -0.41 1.49 16 18 C 0.01 0.33 5.06 -17.43 -0.09 0.24 16 19 N -0.89 -25.19 10.71 55.49 0.59 -24.59 16 20 Si 0.91 21.25 29.58 -169.99 -5.03 16.22 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 26 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 27 H 0.13 1.74 7.96 -52.48 -0.42 1.32 16 28 H 0.13 1.59 8.06 -52.48 -0.42 1.16 16 29 H 0.13 1.86 8.06 -52.48 -0.42 1.44 16 30 H 0.14 2.66 4.73 -52.49 -0.25 2.41 16 31 H 0.04 0.93 6.60 -51.93 -0.34 0.59 16 32 H 0.05 1.30 7.25 -51.93 -0.38 0.92 16 33 H 0.02 0.39 4.92 -51.93 -0.26 0.14 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 293.13 15.07 4.42 4.42 Total: -1.00 -30.22 293.13 -5.87 -36.10 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -3.69 Total: 0.29 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -1.07 Total: 1.57 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.13 Total: -38.69 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.67 Total: -17.58 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.33 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.22 -5.87 -36.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263925507.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.706 kcal (2) G-P(sol) polarization free energy of solvation -30.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds