Wall clock time and date at job start Mon Mar 30 2020 00:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34225 * 116.99871 * 2 1 4 4 O 1.20821 * 120.00131 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99793 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.47058 * 59.99754 * 5 3 2 7 7 C 1.50702 * 109.47154 * 299.99995 * 5 3 2 8 8 C 1.38243 * 119.97474 * 112.15766 * 7 5 3 9 9 C 1.38199 * 120.02285 * 179.97438 * 8 7 5 10 10 C 1.38455 * 119.97757 * 0.23952 * 9 8 7 11 11 F 1.35103 * 120.02632 * 179.72742 * 10 9 8 12 12 C 1.38463 * 119.94682 * 359.48712 * 10 9 8 13 13 C 1.38199 * 119.97343 * 0.53425 * 12 10 9 14 14 N 1.46494 * 109.47235 * 179.97438 * 5 3 2 15 15 C 1.46504 * 120.00034 * 54.71514 * 14 5 3 16 16 C 1.36939 * 120.00307 * 234.71637 * 14 5 3 17 17 H 1.08004 * 119.99797 * 21.08922 * 16 14 5 18 18 C 1.38814 * 120.00187 * 201.08853 * 16 14 5 19 19 N 1.31614 * 119.99675 * 15.01027 * 18 16 14 20 20 Si 1.86802 * 119.99862 * 195.01195 * 18 16 14 21 21 H 1.48503 * 109.46854 * 94.97955 * 20 18 16 22 22 H 1.48496 * 109.47015 * 214.98139 * 20 18 16 23 23 H 1.48503 * 109.47101 * 334.98110 * 20 18 16 24 24 H 1.08991 * 109.47262 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46976 * 300.00302 * 1 2 3 26 26 H 1.08998 * 109.47187 * 60.00057 * 1 2 3 27 27 H 1.08004 * 119.98965 * 359.97438 * 8 7 5 28 28 H 1.08003 * 120.01035 * 179.97438 * 9 8 7 29 29 H 1.08003 * 120.01265 * 180.25498 * 12 10 9 30 30 H 1.07993 * 119.98979 * 179.74601 * 13 12 10 31 31 H 1.09004 * 109.46668 * 94.96875 * 15 14 5 32 32 H 1.08999 * 109.47262 * 214.97165 * 15 14 5 33 33 H 1.09003 * 109.47246 * 334.97724 * 15 14 5 34 34 H 0.97007 * 119.99339 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9558 0.7808 -0.8908 7 6 4.1057 0.5914 1.2295 8 6 4.8242 -0.5834 1.1080 9 6 5.3197 -1.2107 2.2354 10 6 5.0920 -0.6647 3.4872 11 9 5.5713 -1.2800 4.5904 12 6 4.3772 0.5150 3.6073 13 6 3.8822 1.1403 2.4786 14 7 3.9818 2.6796 -0.0011 15 6 3.4871 3.5902 1.0346 16 6 4.8325 3.1418 -0.9696 17 1 4.9317 2.6056 -1.9018 18 6 5.5673 4.2994 -0.7531 19 7 5.6814 4.7886 0.4634 20 14 6.3942 5.1629 -2.1885 21 1 5.5083 6.2426 -2.6934 22 1 7.6820 5.7492 -1.7381 23 1 6.6494 4.1833 -3.2750 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 4.9983 -1.0112 0.1317 28 1 5.8806 -2.1287 2.1403 29 1 4.2025 0.9440 4.5829 30 1 3.3211 2.0582 2.5722 31 1 4.2126 3.6457 1.8462 32 1 3.3431 4.5825 0.6073 33 1 2.5376 3.2196 1.4209 34 1 6.1946 5.5978 0.6146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263925507.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:52 Heat of formation + Delta-G solvation = -84.606847 kcal Electronic energy + Delta-G solvation = -20678.112985 eV Core-core repulsion = 17298.447078 eV Total energy + Delta-G solvation = -3379.665907 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.83358 -41.66463 -39.92352 -37.87317 -36.79034 -33.98691 -32.18616 -31.49652 -29.27611 -28.22688 -27.39041 -24.10323 -23.80992 -23.14912 -21.32408 -19.13579 -18.65013 -18.34411 -17.54881 -17.52969 -17.16029 -16.81156 -16.51313 -16.09341 -15.49242 -15.10700 -14.89332 -14.47920 -14.35739 -14.18107 -13.90647 -13.59058 -13.17532 -12.94594 -12.87408 -12.72430 -12.63044 -12.35027 -12.16215 -11.95057 -11.75168 -11.63995 -11.35782 -10.67628 -9.96379 -9.49973 -8.98363 -7.89234 -5.38267 0.19313 0.37296 1.27747 1.46928 1.50350 1.58347 1.81470 2.47358 2.69516 3.27621 3.33726 3.55100 3.79390 3.84880 4.00843 4.18219 4.25554 4.36834 4.37992 4.46424 4.61892 4.72904 4.76772 5.00798 5.05819 5.19489 5.29199 5.34186 5.43772 5.56327 5.64046 5.64712 5.99595 6.18976 6.85665 7.04317 7.69364 8.12759 9.14241 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.015005 B = 0.007742 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.656330 B = 3615.893898 C = 4807.629339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.449 3.551 4 O -0.527 6.527 5 C 0.219 3.781 6 H 0.126 0.874 7 C -0.101 4.101 8 C -0.073 4.073 9 C -0.147 4.147 10 C 0.079 3.921 11 F -0.146 7.146 12 C -0.159 4.159 13 C -0.097 4.097 14 N -0.578 5.578 15 C 0.182 3.818 16 C -0.277 4.277 17 H 0.085 0.915 18 C -0.043 4.043 19 N -0.929 5.929 20 Si 0.973 3.027 21 H -0.291 1.291 22 H -0.294 1.294 23 H -0.260 1.260 24 H 0.135 0.865 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.161 0.839 28 H 0.164 0.836 29 H 0.143 0.857 30 H 0.120 0.880 31 H 0.016 0.984 32 H 0.011 0.989 33 H 0.028 0.972 34 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.061 -13.441 1.760 14.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.290 3.710 4 O -0.415 6.415 5 C 0.108 3.892 6 H 0.144 0.856 7 C -0.104 4.104 8 C -0.091 4.091 9 C -0.165 4.165 10 C 0.060 3.940 11 F -0.125 7.125 12 C -0.177 4.177 13 C -0.115 4.115 14 N -0.297 5.297 15 C 0.038 3.962 16 C -0.406 4.406 17 H 0.102 0.898 18 C -0.239 4.239 19 N -0.573 5.573 20 Si 0.801 3.199 21 H -0.219 1.219 22 H -0.221 1.221 23 H -0.184 1.184 24 H 0.153 0.847 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.178 0.822 28 H 0.182 0.818 29 H 0.161 0.839 30 H 0.138 0.862 31 H 0.035 0.965 32 H 0.030 0.970 33 H 0.046 0.954 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.191 -12.989 1.836 14.108 hybrid contribution 0.231 1.204 -0.162 1.237 sum -4.960 -11.784 1.675 12.895 Atomic orbital electron populations 1.23496 0.75641 1.05501 1.01998 1.86547 1.24407 1.32759 1.83758 1.25397 0.93245 0.81259 0.71060 1.90590 1.67450 1.37544 1.45963 1.18936 0.85546 0.86856 0.97863 0.85618 1.20352 1.00151 0.95665 0.94242 1.21123 0.95012 0.93064 0.99919 1.21333 1.02572 1.02504 0.90093 1.17824 0.99324 0.93573 0.83328 1.91458 1.86516 1.82313 1.52185 1.21180 1.00770 0.95568 1.00205 1.21196 0.99215 0.98964 0.92126 1.43897 1.51429 1.02839 1.31577 1.20677 0.93234 0.91649 0.90686 1.19640 1.17259 1.08866 0.94792 0.89758 1.25773 0.99088 1.00471 0.98594 1.70260 1.43693 1.23064 1.20295 0.85169 0.76980 0.78642 0.79134 1.21853 1.22059 1.18436 0.84685 0.92705 0.92392 0.82164 0.81839 0.83942 0.86247 0.96541 0.97015 0.95411 0.94041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.82 16 2 O -0.36 -11.05 10.48 -51.37 -0.54 -11.59 16 3 C 0.45 17.17 6.77 71.24 0.48 17.65 16 4 O -0.53 -23.42 13.90 21.98 0.31 -23.11 16 5 C 0.22 8.66 2.94 43.50 0.13 8.79 16 6 H 0.13 4.49 7.60 -2.39 -0.02 4.47 16 7 C -0.10 -3.62 4.88 -19.86 -0.10 -3.72 16 8 C -0.07 -2.08 9.67 22.26 0.22 -1.87 16 9 C -0.15 -3.87 10.03 22.31 0.22 -3.64 16 10 C 0.08 2.35 7.30 22.37 0.16 2.52 16 11 F -0.15 -4.22 17.27 44.97 0.78 -3.44 16 12 C -0.16 -5.10 10.03 22.31 0.22 -4.88 16 13 C -0.10 -3.56 8.49 22.26 0.19 -3.37 16 14 N -0.58 -28.64 2.63 -711.19 -1.87 -30.51 16 15 C 0.18 9.34 6.21 127.77 0.79 10.14 16 16 C -0.28 -14.70 9.61 84.03 0.81 -13.90 16 17 H 0.08 4.20 7.80 -2.91 -0.02 4.18 16 18 C -0.04 -2.35 5.06 84.86 0.43 -1.92 16 19 N -0.93 -54.12 10.71 21.65 0.23 -53.88 16 20 Si 0.97 44.15 29.58 68.60 2.03 46.18 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 23 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 24 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.05 1.30 8.13 -2.38 -0.02 1.28 16 26 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 27 H 0.16 3.58 7.96 -2.91 -0.02 3.56 16 28 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 29 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 30 H 0.12 4.78 4.73 -2.91 -0.01 4.77 16 31 H 0.02 0.90 6.60 -2.38 -0.02 0.88 16 32 H 0.01 0.64 7.25 -2.39 -0.02 0.62 16 33 H 0.03 1.33 4.92 -2.39 -0.01 1.32 16 34 H 0.25 14.20 8.31 -92.70 -0.77 13.43 16 Total: -1.00 -66.21 293.13 6.82 -59.39 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 1.12 Total: 9.34 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 4.76 Total: 7.62 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -1.64 Total: -84.39 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.23 Total: -34.70 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.78 Total: -3.44 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -66.21 6.82 -59.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263925507.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.215 kcal (2) G-P(sol) polarization free energy of solvation -66.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds