Wall clock time and date at job start Mon Mar 30 2020 00:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46493 * 109.47290 * 2 1 4 4 C 1.46496 * 120.00297 * 270.00336 * 3 2 1 5 5 C 1.50709 * 109.47001 * 270.00103 * 4 3 2 6 6 H 1.08001 * 119.99331 * 359.97438 * 5 4 3 7 7 C 1.37869 * 120.00246 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00062 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00393 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47275 * 89.99325 * 9 7 5 11 11 H 1.48501 * 109.47447 * 209.99854 * 9 7 5 12 12 H 1.48500 * 109.46856 * 330.00053 * 9 7 5 13 13 C 1.34784 * 119.99962 * 90.00051 * 3 2 1 14 14 O 1.21281 * 120.00093 * 179.97438 * 13 3 2 15 15 C 1.50696 * 119.99865 * 0.02562 * 13 3 2 16 16 C 1.53000 * 109.47110 * 179.97438 * 15 13 3 17 17 C 1.50706 * 109.47116 * 179.97438 * 16 15 13 18 18 C 1.33391 * 125.19937 * 90.00083 * 17 16 15 19 19 C 1.38423 * 114.92045 * 179.97438 * 18 17 16 20 20 C 1.33390 * 114.91979 * 359.97438 * 19 18 17 21 21 S 1.75878 * 125.20693 * 269.69344 * 17 16 15 22 22 H 1.09000 * 109.46938 * 299.99945 * 1 2 3 23 23 H 1.08999 * 109.46962 * 59.99467 * 1 2 3 24 24 H 1.09001 * 109.47483 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46938 * 240.00055 * 2 1 3 26 26 H 1.08999 * 109.46962 * 120.00533 * 2 1 3 27 27 H 1.09000 * 109.47287 * 29.99656 * 4 3 2 28 28 H 1.09002 * 109.47320 * 150.00258 * 4 3 2 29 29 H 0.96994 * 120.00434 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.47543 * 59.99570 * 15 13 3 31 31 H 1.09008 * 109.47338 * 300.00084 * 15 13 3 32 32 H 1.09000 * 109.46884 * 60.00335 * 16 15 13 33 33 H 1.09000 * 109.46955 * 299.99651 * 16 15 13 34 34 H 1.07995 * 122.54106 * 359.95411 * 18 17 16 35 35 H 1.08001 * 122.53959 * 180.02562 * 19 18 17 36 36 H 1.07998 * 125.20163 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7038 6 1 4.3429 1.2307 -1.0957 7 6 4.1495 2.3904 -2.8773 8 7 3.3496 3.1266 -3.6175 9 14 5.9139 2.0974 -3.4163 10 1 5.9777 0.8767 -4.2596 11 1 6.3929 3.2652 -4.1988 12 1 6.7737 1.9174 -2.2191 13 6 2.2431 2.0165 1.1673 14 8 2.6479 3.1598 1.1673 15 6 1.9925 1.3059 2.4723 16 6 2.3244 2.2430 3.6353 17 6 2.0732 1.5326 4.9404 18 6 2.9725 0.8064 5.6061 19 6 2.5128 0.2472 6.7859 20 6 1.2402 0.5197 7.0786 21 16 0.5517 1.5404 5.8226 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.5818 1.6877 -2.0283 28 1 2.0957 3.1410 -1.1383 29 1 3.6756 3.5171 -4.4433 30 1 2.6229 0.4186 2.5299 31 1 0.9446 1.0113 2.5303 32 1 1.6941 3.1305 3.5779 33 1 3.3724 2.5371 3.5771 34 1 3.9827 0.6652 5.2513 35 1 3.1373 -0.3628 7.4218 36 1 0.7144 0.1704 7.9548 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264005396.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:16 Heat of formation + Delta-G solvation = -16.582737 kcal Electronic energy + Delta-G solvation = -17752.554996 eV Core-core repulsion = 14942.052011 eV Total energy + Delta-G solvation = -2810.502985 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.18856 -37.90425 -35.32409 -33.57688 -32.68415 -30.07884 -29.00543 -27.03231 -24.93875 -23.07724 -22.90645 -21.70866 -19.28077 -18.23529 -17.28244 -16.43174 -16.08014 -15.57301 -15.40573 -14.92624 -14.31195 -13.70163 -13.39750 -13.20434 -13.01820 -12.83304 -12.43829 -12.20909 -11.98820 -11.86659 -11.80894 -11.46778 -11.17180 -11.01384 -10.89471 -10.74644 -10.59426 -10.47500 -10.11558 -9.61837 -8.97463 -8.62445 -8.55306 -8.42271 -7.63982 -6.03027 -4.07717 0.92639 1.56517 1.94081 2.67263 3.30589 3.37101 3.40361 3.47171 3.96124 4.45581 4.74636 4.95724 5.11595 5.25100 5.28406 5.32385 5.36985 5.47542 5.52530 5.64932 5.73454 5.83359 5.90316 6.07662 6.14622 6.22703 6.25196 6.26520 6.45883 6.51268 7.09191 7.46727 7.57525 7.93652 8.25403 8.45439 8.91796 9.12007 9.57441 11.05062 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.028779 B = 0.004120 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.707161 B = 6795.296643 C = 7197.902105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.597 5.597 4 C 0.246 3.754 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.505 3.495 14 O -0.544 6.544 15 C -0.134 4.134 16 C -0.036 4.036 17 C -0.158 4.158 18 C -0.148 4.148 19 C -0.130 4.130 20 C -0.224 4.224 21 S 0.091 5.909 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.031 0.969 28 H 0.043 0.957 29 H 0.263 0.737 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.961 -8.209 17.673 20.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.329 5.329 4 C 0.126 3.874 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.422 6.422 15 C -0.175 4.175 16 C -0.076 4.076 17 C -0.275 4.275 18 C -0.178 4.178 19 C -0.161 4.161 20 C -0.360 4.360 21 S 0.354 5.646 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.100 0.900 26 H 0.083 0.917 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.175 -6.842 17.254 19.899 hybrid contribution 2.289 -0.980 -0.112 2.492 sum -4.887 -7.821 17.142 19.465 Atomic orbital electron populations 1.22221 0.96848 1.01385 1.02294 1.21410 0.93481 0.84252 1.02648 1.48258 1.63629 1.13233 1.07783 1.19262 0.96214 0.93647 0.78234 1.21445 0.96955 1.31802 1.06235 0.92497 1.24936 0.97843 0.94928 0.96425 1.69933 1.35696 1.33474 1.14327 0.86503 0.84717 0.77659 0.78581 1.20660 1.21090 1.19905 1.20288 0.78495 0.86936 0.85163 1.90668 1.45988 1.18192 1.87317 1.21726 1.03294 0.99646 0.92817 1.19926 1.04115 0.96823 0.86705 1.24672 0.96307 1.04837 1.01703 1.20180 1.01149 1.00537 0.95902 1.20168 0.95403 1.02505 0.98017 1.25563 0.99264 1.06882 1.04256 1.84334 1.14615 1.49654 1.16024 0.93056 0.92076 0.92207 0.90037 0.91687 0.95087 0.93921 0.92743 0.89240 0.89532 0.89989 0.89009 0.84204 0.84521 0.82206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 37.16 0.38 -1.91 16 2 C 0.11 1.71 5.93 -4.04 -0.02 1.68 16 3 N -0.60 -12.60 2.46 -175.06 -0.43 -13.03 16 4 C 0.25 6.45 5.16 -5.19 -0.03 6.42 16 5 C -0.53 -14.97 9.39 -34.44 -0.32 -15.30 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 9 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.50 10.39 7.67 -10.98 -0.08 10.30 16 14 O -0.54 -13.57 15.56 5.56 0.09 -13.49 16 15 C -0.13 -1.98 4.23 -27.89 -0.12 -2.10 16 16 C -0.04 -0.51 5.00 -27.88 -0.14 -0.65 16 17 C -0.16 -1.92 5.76 -36.00 -0.21 -2.13 16 18 C -0.15 -1.66 10.05 -41.21 -0.41 -2.07 16 19 C -0.13 -1.28 10.18 -41.21 -0.42 -1.70 16 20 C -0.22 -2.13 11.23 29.04 0.33 -1.80 16 21 S 0.09 0.98 23.33 -107.50 -2.51 -1.53 16 22 H 0.05 0.66 7.22 -51.93 -0.38 0.29 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 26 H 0.06 0.87 6.44 -51.93 -0.33 0.54 16 27 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 28 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.09 1.20 7.40 -51.93 -0.38 0.81 16 31 H 0.09 1.13 7.19 -51.92 -0.37 0.76 16 32 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 33 H 0.09 1.37 8.10 -51.93 -0.42 0.95 16 34 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 320.38 15.07 4.83 4.83 Total: -1.00 -32.61 320.38 -8.65 -41.25 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -5.19 Total: -1.35 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -1.15 Total: -7.60 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.31 Total: -39.04 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.09 Total: -13.49 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.51 Total: -1.53 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.61 -8.65 -41.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264005396.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.672 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds