Wall clock time and date at job start Mon Mar 30 2020 00:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46493 * 109.47290 * 2 1 4 4 C 1.46496 * 120.00297 * 270.00336 * 3 2 1 5 5 C 1.50709 * 109.47001 * 270.00103 * 4 3 2 6 6 H 1.08001 * 119.99331 * 359.97438 * 5 4 3 7 7 C 1.37869 * 120.00246 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00062 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00393 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47275 * 89.99325 * 9 7 5 11 11 H 1.48501 * 109.47447 * 209.99854 * 9 7 5 12 12 H 1.48500 * 109.46856 * 330.00053 * 9 7 5 13 13 C 1.34784 * 119.99962 * 90.00051 * 3 2 1 14 14 O 1.21281 * 120.00093 * 179.97438 * 13 3 2 15 15 C 1.50696 * 119.99865 * 0.02562 * 13 3 2 16 16 C 1.53000 * 109.47110 * 179.97438 * 15 13 3 17 17 C 1.50706 * 109.47116 * 179.97438 * 16 15 13 18 18 C 1.33391 * 125.19937 * 90.00083 * 17 16 15 19 19 C 1.38423 * 114.92045 * 179.97438 * 18 17 16 20 20 C 1.33390 * 114.91979 * 359.97438 * 19 18 17 21 21 S 1.75878 * 125.20693 * 269.69344 * 17 16 15 22 22 H 1.09000 * 109.46938 * 299.99945 * 1 2 3 23 23 H 1.08999 * 109.46962 * 59.99467 * 1 2 3 24 24 H 1.09001 * 109.47483 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46938 * 240.00055 * 2 1 3 26 26 H 1.08999 * 109.46962 * 120.00533 * 2 1 3 27 27 H 1.09000 * 109.47287 * 29.99656 * 4 3 2 28 28 H 1.09002 * 109.47320 * 150.00258 * 4 3 2 29 29 H 0.96994 * 120.00434 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.47543 * 59.99570 * 15 13 3 31 31 H 1.09008 * 109.47338 * 300.00084 * 15 13 3 32 32 H 1.09000 * 109.46884 * 60.00335 * 16 15 13 33 33 H 1.09000 * 109.46955 * 299.99651 * 16 15 13 34 34 H 1.07995 * 122.54106 * 359.95411 * 18 17 16 35 35 H 1.08001 * 122.53959 * 180.02562 * 19 18 17 36 36 H 1.07998 * 125.20163 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7038 6 1 4.3429 1.2307 -1.0957 7 6 4.1495 2.3904 -2.8773 8 7 3.3496 3.1266 -3.6175 9 14 5.9139 2.0974 -3.4163 10 1 5.9777 0.8767 -4.2596 11 1 6.3929 3.2652 -4.1988 12 1 6.7737 1.9174 -2.2191 13 6 2.2431 2.0165 1.1673 14 8 2.6479 3.1598 1.1673 15 6 1.9925 1.3059 2.4723 16 6 2.3244 2.2430 3.6353 17 6 2.0732 1.5326 4.9404 18 6 2.9725 0.8064 5.6061 19 6 2.5128 0.2472 6.7859 20 6 1.2402 0.5197 7.0786 21 16 0.5517 1.5404 5.8226 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.5818 1.6877 -2.0283 28 1 2.0957 3.1410 -1.1383 29 1 3.6756 3.5171 -4.4433 30 1 2.6229 0.4186 2.5299 31 1 0.9446 1.0113 2.5303 32 1 1.6941 3.1305 3.5779 33 1 3.3724 2.5371 3.5771 34 1 3.9827 0.6652 5.2513 35 1 3.1373 -0.3628 7.4218 36 1 0.7144 0.1704 7.9548 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264005396.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:15 Heat of formation + Delta-G solvation = -35.652813 kcal Electronic energy + Delta-G solvation = -17753.381936 eV Core-core repulsion = 14942.052011 eV Total energy + Delta-G solvation = -2811.329925 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.79736 -38.77627 -36.99428 -35.06336 -34.46882 -31.61805 -30.19534 -28.73598 -26.22334 -24.72720 -24.11114 -23.00910 -20.08747 -19.82668 -18.66420 -18.31172 -17.36580 -17.20007 -16.61256 -16.24393 -16.06397 -15.04150 -14.76745 -14.56837 -14.14061 -14.08443 -13.73778 -13.49519 -13.27262 -13.16751 -13.08404 -12.94912 -12.83367 -12.64019 -12.42304 -12.19352 -12.04409 -11.79280 -11.71170 -11.55521 -10.64380 -10.61754 -9.52723 -9.43620 -9.36027 -8.22480 -6.37639 0.11329 0.74872 1.15551 1.36111 1.39296 1.49622 1.84099 1.88109 2.31760 2.46707 3.06838 3.57983 3.97584 4.07387 4.10713 4.23031 4.32012 4.41772 4.53690 4.63727 4.69570 4.75394 4.89782 4.97517 4.99918 5.05177 5.10232 5.22687 5.29097 5.39488 5.44982 5.58232 5.64253 5.86519 6.06636 6.69898 6.81043 7.28189 7.49075 8.84666 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.028779 B = 0.004120 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.707161 B = 6795.296643 C = 7197.902105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.261 3.739 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.969 3.031 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.272 1.272 13 C 0.495 3.505 14 O -0.599 6.599 15 C -0.115 4.115 16 C -0.029 4.029 17 C -0.182 4.182 18 C -0.143 4.143 19 C -0.140 4.140 20 C -0.212 4.212 21 S 0.083 5.917 22 H 0.059 0.941 23 H 0.037 0.963 24 H 0.095 0.905 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.021 0.979 28 H -0.005 1.005 29 H 0.267 0.733 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.146 0.854 35 H 0.162 0.838 36 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.672 -10.769 19.575 23.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.334 5.334 4 C 0.140 3.860 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.197 1.197 13 C 0.284 3.716 14 O -0.481 6.481 15 C -0.156 4.156 16 C -0.068 4.068 17 C -0.299 4.299 18 C -0.174 4.174 19 C -0.170 4.170 20 C -0.347 4.347 21 S 0.346 5.654 22 H 0.078 0.922 23 H 0.057 0.943 24 H 0.114 0.886 25 H 0.090 0.910 26 H 0.119 0.881 27 H 0.039 0.961 28 H 0.013 0.987 29 H 0.076 0.924 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.164 0.836 35 H 0.179 0.821 36 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -6.914 -9.451 19.170 22.464 hybrid contribution 2.152 -0.187 -0.643 2.253 sum -4.763 -9.638 18.527 21.420 Atomic orbital electron populations 1.22157 0.94662 1.03510 1.01621 1.21749 0.95265 0.81344 1.03931 1.48305 1.63737 1.15116 1.06276 1.18697 0.95306 0.91478 0.80555 1.21725 0.97878 1.31995 1.06577 0.92799 1.25882 1.02501 0.94426 0.96429 1.70057 1.37854 1.34220 1.14795 0.85396 0.78871 0.78201 0.78224 1.18746 1.20656 1.19701 1.21358 0.77026 0.86515 0.86710 1.90634 1.48384 1.20846 1.88236 1.21667 1.05202 0.99580 0.89102 1.19711 1.02776 0.96450 0.87891 1.24408 0.97674 1.06365 1.01491 1.20429 1.01223 0.99574 0.96139 1.20416 0.95897 1.02857 0.97812 1.25945 0.99187 1.05353 1.04222 1.84370 1.14046 1.50329 1.16691 0.92174 0.94346 0.88593 0.91013 0.88098 0.96139 0.98675 0.92415 0.86907 0.87052 0.91602 0.90651 0.83603 0.82055 0.79519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 10.24 71.99 0.74 -3.32 16 2 C 0.10 3.05 5.93 86.38 0.51 3.56 16 3 N -0.60 -25.92 2.46 -826.14 -2.03 -27.95 16 4 C 0.26 14.39 5.16 85.64 0.44 14.84 16 5 C -0.54 -31.82 9.39 25.60 0.24 -31.58 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.38 5.46 84.65 0.46 0.84 16 8 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 9 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 10 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 13 C 0.49 20.76 7.67 87.65 0.67 21.43 16 14 O -0.60 -31.50 15.56 -3.03 -0.05 -31.55 16 15 C -0.12 -3.26 4.23 29.85 0.13 -3.13 16 16 C -0.03 -0.80 5.00 29.85 0.15 -0.65 16 17 C -0.18 -4.17 5.76 24.59 0.14 -4.03 16 18 C -0.14 -2.87 10.05 21.22 0.21 -2.66 16 19 C -0.14 -2.27 10.18 21.22 0.22 -2.05 16 20 C -0.21 -3.30 11.23 66.72 0.75 -2.55 16 21 S 0.08 1.62 23.33 -56.49 -1.32 0.31 16 22 H 0.06 1.41 7.22 -2.39 -0.02 1.39 16 23 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 26 H 0.10 2.38 6.44 -2.39 -0.02 2.36 16 27 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 28 H 0.00 -0.31 7.42 -2.39 -0.02 -0.33 16 29 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 30 H 0.11 2.70 7.40 -2.39 -0.02 2.68 16 31 H 0.11 2.62 7.19 -2.38 -0.02 2.61 16 32 H 0.07 2.02 8.10 -2.39 -0.02 2.00 16 33 H 0.07 2.32 8.10 -2.39 -0.02 2.30 16 34 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 35 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -74.16 320.38 4.64 -69.53 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 1.06 Total: 8.35 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 4.66 Total: -9.30 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -1.74 Total: -84.71 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.05 Total: -31.55 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -1.32 Total: 0.31 kcal Total: -74.16 4.64 -69.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264005396.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.876 kcal (2) G-P(sol) polarization free energy of solvation -74.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds