Wall clock time and date at job start Mon Mar 30 2020 00:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46926 * 2 1 4 4 C 1.50702 * 109.46896 * 119.99631 * 2 1 3 5 5 H 1.08001 * 120.00089 * 85.05397 * 4 2 1 6 6 C 1.37880 * 119.99796 * 265.05089 * 4 2 1 7 7 N 1.31514 * 119.99543 * 176.46253 * 6 4 2 8 8 Si 1.86794 * 120.00028 * 356.46680 * 6 4 2 9 9 H 1.48499 * 109.47255 * 274.92138 * 8 6 4 10 10 H 1.48497 * 109.47373 * 34.92801 * 8 6 4 11 11 H 1.48507 * 109.46963 * 154.92420 * 8 6 4 12 12 N 1.46495 * 109.47398 * 239.99722 * 2 1 3 13 13 C 1.46498 * 120.00086 * 300.00036 * 12 2 1 14 14 C 1.34780 * 120.00002 * 119.99746 * 12 2 1 15 15 O 1.21279 * 119.99864 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99900 * 179.97438 * 14 12 2 17 17 C 1.52999 * 109.47224 * 180.02562 * 16 14 12 18 18 C 1.50696 * 109.47558 * 179.97438 * 17 16 14 19 19 C 1.38431 * 122.53780 * 89.99940 * 18 17 16 20 20 C 1.33388 * 114.92322 * 179.97438 * 19 18 17 21 21 S 1.75886 * 109.59255 * 0.02562 * 20 19 18 22 22 C 1.33388 * 122.54342 * 269.71544 * 18 17 16 23 23 H 1.09004 * 109.47201 * 185.54431 * 1 2 3 24 24 H 1.08997 * 109.47748 * 305.54647 * 1 2 3 25 25 H 1.09001 * 109.47150 * 65.54826 * 1 2 3 26 26 H 0.97005 * 119.99553 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.47307 * 89.99868 * 13 12 2 28 28 H 1.09006 * 109.47299 * 209.99961 * 13 12 2 29 29 H 1.09005 * 109.47170 * 330.00001 * 13 12 2 30 30 H 1.08999 * 109.47605 * 300.00054 * 16 14 12 31 31 H 1.09002 * 109.47117 * 60.00098 * 16 14 12 32 32 H 1.08999 * 109.47254 * 300.00723 * 17 16 14 33 33 H 1.09002 * 109.47073 * 59.99973 * 17 16 14 34 34 H 1.08005 * 122.53750 * 0.02562 * 19 18 17 35 35 H 1.07994 * 125.20528 * 180.02562 * 20 19 18 36 36 H 1.07994 * 125.20144 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.1363 -1.7853 1.2289 6 6 2.3592 0.0122 2.3585 7 7 2.7310 -0.6123 3.4545 8 14 2.2739 1.8780 2.3297 9 1 3.5443 2.4233 1.7876 10 1 1.1430 2.3086 1.4690 11 1 2.0665 2.3853 3.7099 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0356 -2.0833 15 8 3.0865 1.1254 -1.8912 16 6 3.2961 -0.7463 -3.3134 17 6 4.1465 0.2152 -4.1460 18 6 4.6499 -0.4955 -5.3758 19 6 3.9461 -0.5103 -6.5677 20 6 4.5323 -1.1843 -7.5583 21 16 6.0585 -1.8526 -6.9946 22 6 5.8100 -1.1534 -5.3999 23 1 -0.3634 -1.0229 0.0993 24 1 -0.3634 0.5974 0.8361 25 1 -0.3633 0.4254 -0.9355 26 1 2.9613 -0.1040 4.2479 27 1 0.7377 -2.1445 -1.9992 28 1 2.4630 -2.5819 -1.9862 29 1 1.5296 -2.5969 -0.4706 30 1 3.9019 -1.6023 -3.0164 31 1 2.4486 -1.0893 -3.9068 32 1 3.5411 1.0716 -4.4430 33 1 4.9940 0.5579 -3.5524 34 1 2.9948 -0.0129 -6.6868 35 1 4.1312 -1.3018 -8.5541 36 1 6.4913 -1.2449 -4.5670 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264028056.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:28 Heat of formation + Delta-G solvation = -10.699700 kcal Electronic energy + Delta-G solvation = -17922.219232 eV Core-core repulsion = 15111.971355 eV Total energy + Delta-G solvation = -2810.247877 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.38089 -38.22021 -35.45023 -32.99551 -32.38164 -30.41153 -28.96867 -26.19058 -25.40668 -25.08270 -22.66847 -20.65309 -18.77069 -18.20041 -17.70467 -17.19600 -16.12139 -15.58147 -15.30641 -14.88614 -14.12301 -13.54457 -13.38254 -13.12193 -12.80236 -12.64581 -12.45536 -12.39794 -12.06811 -11.99600 -11.87612 -11.47890 -11.33296 -11.06266 -10.89334 -10.76737 -10.68000 -10.41252 -9.78776 -9.28591 -9.03388 -8.87850 -8.61690 -8.43944 -7.65142 -6.16942 -4.19218 0.90708 1.56270 1.88004 2.60641 3.31278 3.35051 3.38981 3.45798 3.90771 4.38781 4.78723 4.92061 5.16239 5.21671 5.24959 5.31588 5.48923 5.52982 5.65606 5.81514 5.90162 5.96731 6.02007 6.20537 6.28887 6.36341 6.40203 6.42188 6.50037 6.59564 6.93852 7.08829 7.49388 7.65120 8.15979 8.51608 8.84007 8.97548 9.45818 10.94975 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.033432 B = 0.004009 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.329790 B = 6981.876886 C = 7073.049155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.222 3.778 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.078 0.922 6 C 0.079 3.921 7 N -0.893 5.893 8 Si 0.875 3.125 9 H -0.271 1.271 10 H -0.264 1.264 11 H -0.288 1.288 12 N -0.590 5.590 13 C 0.083 3.917 14 C 0.503 3.497 15 O -0.559 6.559 16 C -0.131 4.131 17 C -0.046 4.046 18 C -0.095 4.095 19 C -0.127 4.127 20 C -0.214 4.214 21 S 0.077 5.923 22 C -0.208 4.208 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.025 0.975 26 H 0.266 0.734 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.141 0.859 35 H 0.162 0.838 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.133 -3.240 -19.766 20.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.121 3.879 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.096 0.904 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.702 3.298 9 H -0.196 1.196 10 H -0.188 1.188 11 H -0.214 1.214 12 N -0.321 5.321 13 C -0.061 4.061 14 C 0.290 3.710 15 O -0.439 6.439 16 C -0.171 4.171 17 C -0.086 4.086 18 C -0.108 4.108 19 C -0.158 4.158 20 C -0.350 4.350 21 S 0.340 5.660 22 C -0.344 4.344 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.158 0.842 35 H 0.180 0.820 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.478 -3.514 -20.123 20.722 hybrid contribution -1.115 1.538 0.771 2.050 sum 2.363 -1.976 -19.353 19.596 Atomic orbital electron populations 1.22215 0.98408 1.00860 0.99024 1.19285 0.90727 0.94940 0.82944 0.91845 1.21131 1.44663 0.95671 0.94884 0.90415 1.24960 0.93723 0.98537 0.95253 1.69891 1.44852 1.36082 1.02135 0.86882 0.79913 0.86044 0.76916 1.19629 1.18828 1.21403 1.48313 1.49145 1.11676 1.22938 1.21629 0.98898 0.83146 1.02449 1.20506 0.78999 0.87108 0.84384 1.90631 1.58647 1.17439 1.77209 1.21642 1.00757 0.99563 0.95167 1.20078 1.00130 0.96790 0.91635 1.19079 0.94616 1.00447 0.96617 1.20171 1.01713 1.01664 0.92210 1.25560 0.99505 1.06232 1.03656 1.84216 1.21288 1.54282 1.06178 1.25524 1.02299 1.05956 1.00572 0.93190 0.92692 0.95555 0.92401 0.93902 0.92433 0.90067 0.89237 0.89481 0.90177 0.90145 0.84175 0.82043 0.81778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.09 37.16 0.34 -2.76 16 2 C 0.22 5.35 2.27 -69.08 -0.16 5.19 16 3 H 0.06 1.69 4.11 -51.93 -0.21 1.47 16 4 C -0.53 -14.43 8.72 -34.44 -0.30 -14.73 16 5 H 0.08 2.25 6.82 -52.49 -0.36 1.89 16 6 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 7 N -0.89 -26.84 13.96 55.43 0.77 -26.06 16 8 Si 0.88 22.28 26.91 -169.99 -4.57 17.71 16 9 H -0.27 -7.08 7.11 56.52 0.40 -6.67 16 10 H -0.26 -6.48 6.73 56.52 0.38 -6.10 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 N -0.59 -12.16 2.75 -175.26 -0.48 -12.65 16 13 C 0.08 1.34 9.40 59.85 0.56 1.90 16 14 C 0.50 10.00 7.67 -10.99 -0.08 9.92 16 15 O -0.56 -13.28 15.31 5.56 0.09 -13.19 16 16 C -0.13 -1.87 4.23 -27.89 -0.12 -1.98 16 17 C -0.05 -0.62 4.76 -27.89 -0.13 -0.75 16 18 C -0.10 -1.12 5.06 -106.25 -0.54 -1.65 16 19 C -0.13 -1.32 9.98 -41.21 -0.41 -1.73 16 20 C -0.21 -1.99 11.23 29.04 0.33 -1.66 16 21 S 0.08 0.74 23.34 -107.50 -2.51 -1.77 16 22 C -0.21 -2.29 10.98 29.04 0.32 -1.97 16 23 H 0.05 0.98 7.86 -51.93 -0.41 0.58 16 24 H 0.05 1.18 7.97 -51.93 -0.41 0.76 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 29 H 0.08 1.44 6.56 -51.93 -0.34 1.10 16 30 H 0.09 1.18 7.40 -51.93 -0.38 0.80 16 31 H 0.09 1.07 8.11 -51.93 -0.42 0.65 16 32 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 33 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 34 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.16 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 312.28 15.07 4.71 4.71 Total: -1.00 -32.22 312.28 -7.28 -39.50 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -4.98 Total: -0.17 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -0.29 Total: -8.06 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.29 Total: -38.71 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.09 Total: -13.19 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.57 Total: 17.71 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.51 Total: -1.77 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.22 -7.28 -39.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264028056.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.796 kcal (2) G-P(sol) polarization free energy of solvation -32.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds