Wall clock time and date at job start Mon Mar 30 2020 00:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46926 * 2 1 4 4 C 1.50702 * 109.46896 * 119.99631 * 2 1 3 5 5 H 1.08001 * 120.00089 * 85.05397 * 4 2 1 6 6 C 1.37880 * 119.99796 * 265.05089 * 4 2 1 7 7 N 1.31514 * 119.99543 * 176.46253 * 6 4 2 8 8 Si 1.86794 * 120.00028 * 356.46680 * 6 4 2 9 9 H 1.48499 * 109.47255 * 274.92138 * 8 6 4 10 10 H 1.48497 * 109.47373 * 34.92801 * 8 6 4 11 11 H 1.48507 * 109.46963 * 154.92420 * 8 6 4 12 12 N 1.46495 * 109.47398 * 239.99722 * 2 1 3 13 13 C 1.46498 * 120.00086 * 300.00036 * 12 2 1 14 14 C 1.34780 * 120.00002 * 119.99746 * 12 2 1 15 15 O 1.21279 * 119.99864 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99900 * 179.97438 * 14 12 2 17 17 C 1.52999 * 109.47224 * 180.02562 * 16 14 12 18 18 C 1.50696 * 109.47558 * 179.97438 * 17 16 14 19 19 C 1.38431 * 122.53780 * 89.99940 * 18 17 16 20 20 C 1.33388 * 114.92322 * 179.97438 * 19 18 17 21 21 S 1.75886 * 109.59255 * 0.02562 * 20 19 18 22 22 C 1.33388 * 122.54342 * 269.71544 * 18 17 16 23 23 H 1.09004 * 109.47201 * 185.54431 * 1 2 3 24 24 H 1.08997 * 109.47748 * 305.54647 * 1 2 3 25 25 H 1.09001 * 109.47150 * 65.54826 * 1 2 3 26 26 H 0.97005 * 119.99553 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.47307 * 89.99868 * 13 12 2 28 28 H 1.09006 * 109.47299 * 209.99961 * 13 12 2 29 29 H 1.09005 * 109.47170 * 330.00001 * 13 12 2 30 30 H 1.08999 * 109.47605 * 300.00054 * 16 14 12 31 31 H 1.09002 * 109.47117 * 60.00098 * 16 14 12 32 32 H 1.08999 * 109.47254 * 300.00723 * 17 16 14 33 33 H 1.09002 * 109.47073 * 59.99973 * 17 16 14 34 34 H 1.08005 * 122.53750 * 0.02562 * 19 18 17 35 35 H 1.07994 * 125.20528 * 180.02562 * 20 19 18 36 36 H 1.07994 * 125.20144 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.1363 -1.7853 1.2289 6 6 2.3592 0.0122 2.3585 7 7 2.7310 -0.6123 3.4545 8 14 2.2739 1.8780 2.3297 9 1 3.5443 2.4233 1.7876 10 1 1.1430 2.3086 1.4690 11 1 2.0665 2.3853 3.7099 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0356 -2.0833 15 8 3.0865 1.1254 -1.8912 16 6 3.2961 -0.7463 -3.3134 17 6 4.1465 0.2152 -4.1460 18 6 4.6499 -0.4955 -5.3758 19 6 3.9461 -0.5103 -6.5677 20 6 4.5323 -1.1843 -7.5583 21 16 6.0585 -1.8526 -6.9946 22 6 5.8100 -1.1534 -5.3999 23 1 -0.3634 -1.0229 0.0993 24 1 -0.3634 0.5974 0.8361 25 1 -0.3633 0.4254 -0.9355 26 1 2.9613 -0.1040 4.2479 27 1 0.7377 -2.1445 -1.9992 28 1 2.4630 -2.5819 -1.9862 29 1 1.5296 -2.5969 -0.4706 30 1 3.9019 -1.6023 -3.0164 31 1 2.4486 -1.0893 -3.9068 32 1 3.5411 1.0716 -4.4430 33 1 4.9940 0.5579 -3.5524 34 1 2.9948 -0.0129 -6.6868 35 1 4.1312 -1.3018 -8.5541 36 1 6.4913 -1.2449 -4.5670 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264028056.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:27 Heat of formation + Delta-G solvation = -30.286136 kcal Electronic energy + Delta-G solvation = -17923.068564 eV Core-core repulsion = 15111.971355 eV Total energy + Delta-G solvation = -2811.097209 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.87313 -39.16184 -37.16598 -34.76906 -33.81874 -32.07216 -29.91062 -27.60757 -27.28334 -26.34171 -23.66149 -22.26839 -19.79078 -19.60261 -19.22356 -18.51391 -17.64585 -17.17561 -16.65834 -16.15371 -15.75799 -14.90518 -14.68659 -14.47159 -14.23717 -13.98255 -13.83528 -13.73230 -13.38457 -13.22349 -13.06840 -12.96754 -12.78204 -12.65307 -12.58786 -12.27910 -11.91506 -11.81184 -11.59785 -11.26947 -10.81087 -10.62160 -9.66993 -9.31421 -9.23404 -8.37758 -6.41449 0.13580 0.81444 1.12051 1.26408 1.32694 1.40719 1.77724 1.82055 2.26817 2.39246 3.04943 3.71046 4.01183 4.15465 4.24835 4.30899 4.43590 4.50993 4.64935 4.66955 4.71087 4.73961 4.75240 4.84115 4.92972 5.03665 5.15007 5.17030 5.22037 5.35265 5.54401 5.54648 5.64124 5.84524 6.16252 6.64243 6.80231 7.24083 7.42379 8.77581 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.033432 B = 0.004009 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.329790 B = 6981.876886 C = 7073.049155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.220 3.780 3 H 0.038 0.962 4 C -0.520 4.520 5 H 0.054 0.946 6 C 0.028 3.972 7 N -0.935 5.935 8 Si 0.926 3.074 9 H -0.285 1.285 10 H -0.251 1.251 11 H -0.277 1.277 12 N -0.600 5.600 13 C 0.079 3.921 14 C 0.493 3.507 15 O -0.605 6.605 16 C -0.115 4.115 17 C -0.040 4.040 18 C -0.103 4.103 19 C -0.142 4.142 20 C -0.208 4.208 21 S 0.097 5.903 22 C -0.224 4.224 23 H 0.062 0.938 24 H 0.047 0.953 25 H 0.048 0.952 26 H 0.268 0.732 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.153 0.847 35 H 0.188 0.812 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.405 -3.838 -22.435 22.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.117 3.883 3 H 0.056 0.944 4 C -0.558 4.558 5 H 0.073 0.927 6 C -0.171 4.171 7 N -0.574 5.574 8 Si 0.751 3.249 9 H -0.212 1.212 10 H -0.174 1.174 11 H -0.202 1.202 12 N -0.330 5.330 13 C -0.063 4.063 14 C 0.283 3.717 15 O -0.488 6.488 16 C -0.155 4.155 17 C -0.080 4.080 18 C -0.116 4.116 19 C -0.172 4.172 20 C -0.343 4.343 21 S 0.361 5.639 22 C -0.359 4.359 23 H 0.081 0.919 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.135 0.865 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.170 0.830 35 H 0.205 0.795 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.730 -4.143 -22.818 23.351 hybrid contribution -0.839 1.635 1.506 2.376 sum 1.891 -2.509 -21.312 21.542 Atomic orbital electron populations 1.22065 0.95896 1.01795 0.99926 1.19078 0.92584 0.93470 0.83145 0.94389 1.21395 1.43441 0.94811 0.96176 0.92746 1.25624 0.94120 1.02161 0.95216 1.69989 1.47049 1.37511 1.02899 0.86075 0.79514 0.81832 0.77435 1.21167 1.17437 1.20227 1.48305 1.49353 1.13382 1.21966 1.21854 1.01608 0.80531 1.02286 1.21478 0.77885 0.86803 0.85522 1.90605 1.60056 1.19720 1.78457 1.21613 1.01911 0.99283 0.92700 1.19929 0.99172 0.96691 0.92223 1.18960 0.95270 1.00993 0.96367 1.20286 1.02470 1.02527 0.91926 1.25912 0.98928 1.04956 1.04514 1.84183 1.21398 1.53537 1.04821 1.25698 1.02296 1.06166 1.01762 0.91932 0.93393 0.93343 0.92284 0.90713 0.89415 0.92133 0.87746 0.86455 0.90941 0.92145 0.82990 0.79494 0.81538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.61 9.09 71.98 0.65 -4.96 16 2 C 0.22 10.50 2.27 44.25 0.10 10.60 16 3 H 0.04 2.02 4.11 -2.39 -0.01 2.01 16 4 C -0.52 -28.92 8.72 25.60 0.22 -28.69 16 5 H 0.05 3.22 6.82 -2.91 -0.02 3.20 16 6 C 0.03 1.64 5.47 84.66 0.46 2.11 16 7 N -0.93 -57.48 13.96 21.45 0.30 -57.18 16 8 Si 0.93 46.67 26.91 68.60 1.85 48.51 16 9 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 10 H -0.25 -11.95 6.73 99.48 0.67 -11.28 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 12 N -0.60 -23.94 2.75 -826.79 -2.28 -26.22 16 13 C 0.08 2.38 9.40 127.77 1.20 3.58 16 14 C 0.49 19.11 7.67 87.66 0.67 19.78 16 15 O -0.61 -28.92 15.31 -3.03 -0.05 -28.97 16 16 C -0.12 -3.02 4.23 29.85 0.13 -2.89 16 17 C -0.04 -1.03 4.76 29.85 0.14 -0.89 16 18 C -0.10 -2.22 5.06 -20.92 -0.11 -2.33 16 19 C -0.14 -2.57 9.98 21.22 0.21 -2.36 16 20 C -0.21 -3.19 11.23 66.72 0.75 -2.44 16 21 S 0.10 1.61 23.34 -56.49 -1.32 0.29 16 22 C -0.22 -4.53 10.98 66.72 0.73 -3.80 16 23 H 0.06 2.35 7.86 -2.38 -0.02 2.33 16 24 H 0.05 1.98 7.97 -2.39 -0.02 1.96 16 25 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 26 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.09 2.08 6.44 -2.38 -0.02 2.06 16 29 H 0.06 2.08 6.56 -2.38 -0.02 2.06 16 30 H 0.10 2.47 7.40 -2.39 -0.02 2.45 16 31 H 0.12 2.41 8.11 -2.39 -0.02 2.39 16 32 H 0.07 1.97 8.09 -2.39 -0.02 1.95 16 33 H 0.06 1.78 8.07 -2.39 -0.02 1.76 16 34 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 35 H 0.19 1.82 8.06 -2.91 -0.02 1.79 16 36 H 0.17 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -71.04 312.28 4.71 -66.33 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 1.03 Total: 9.52 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 5.17 Total: -12.28 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -1.98 Total: -83.40 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.05 Total: -28.97 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.85 Total: 48.51 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -1.32 Total: 0.29 kcal Total: -71.04 4.71 -66.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264028056.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.043 kcal (2) G-P(sol) polarization free energy of solvation -71.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds