Wall clock time and date at job start Mon Mar 30 2020 00:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47446 * 2 1 4 4 C 1.50702 * 109.47593 * 119.99752 * 2 1 3 5 5 H 1.08006 * 119.99941 * 119.99973 * 4 2 1 6 6 C 1.37869 * 120.00231 * 300.00324 * 4 2 1 7 7 N 1.31521 * 119.99849 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00248 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47115 * 90.00113 * 8 6 4 10 10 H 1.48501 * 109.47236 * 210.00091 * 8 6 4 11 11 H 1.48503 * 109.47098 * 329.99964 * 8 6 4 12 12 N 1.46500 * 109.47255 * 240.00126 * 2 1 3 13 13 C 1.46501 * 119.99994 * 300.00016 * 12 2 1 14 14 C 1.38400 * 120.00170 * 119.99432 * 12 2 1 15 15 N 1.32491 * 119.17677 * 0.02562 * 14 12 2 16 16 C 1.32489 * 120.93258 * 179.97438 * 15 14 12 17 17 C 1.38137 * 119.29008 * 359.97438 * 16 15 14 18 18 N 1.48011 * 120.75541 * 180.02562 * 17 16 15 19 19 O 1.21799 * 120.00258 * 354.01649 * 18 17 16 20 20 O 1.21800 * 120.00172 * 174.02141 * 18 17 16 21 21 C 1.39645 * 118.48451 * 0.02562 * 17 16 15 22 22 N 1.38537 * 120.47834 * 180.02562 * 21 17 16 23 23 N 1.32444 * 119.17416 * 179.72720 * 14 12 2 24 24 H 1.09005 * 109.46996 * 299.99515 * 1 2 3 25 25 H 1.08991 * 109.47627 * 59.99685 * 1 2 3 26 26 H 1.09007 * 109.47187 * 180.02562 * 1 2 3 27 27 H 0.97006 * 119.99694 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47423 * 89.99215 * 13 12 2 29 29 H 1.09001 * 109.46992 * 209.99782 * 13 12 2 30 30 H 1.09002 * 109.47197 * 329.99587 * 13 12 2 31 31 H 1.08002 * 120.35676 * 180.02562 * 16 15 14 32 32 H 0.96997 * 119.99942 * 5.60335 * 22 21 17 33 33 H 0.96998 * 119.99760 * 185.59903 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6534 -1.5885 1.1314 6 6 1.6994 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3216 -1.1202 4.0079 9 1 3.6298 -0.5457 4.4122 10 1 1.3434 -0.9492 5.1120 11 1 2.4861 -2.5661 3.7119 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.8139 -0.0179 -2.1072 15 7 3.1243 1.2501 -1.8812 16 6 3.8838 1.9270 -2.7298 17 6 4.3566 1.2968 -3.8645 18 7 5.2079 2.0220 -4.8340 19 8 5.4099 3.2150 -4.6942 20 8 5.7066 1.4258 -5.7718 21 6 4.0128 -0.0400 -4.0760 22 7 4.4646 -0.7124 -5.1998 23 7 3.2508 -0.6597 -3.1803 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 0.7096 1.1618 3.4845 28 1 0.7375 -2.1444 -1.9993 29 1 2.4629 -2.5818 -1.9864 30 1 1.5295 -2.5969 -0.4709 31 1 4.1314 2.9603 -2.5361 32 1 5.0889 -0.2817 -5.8044 33 1 4.1567 -1.6140 -5.3820 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266869029.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:31 Heat of formation + Delta-G solvation = 63.347990 kcal Electronic energy + Delta-G solvation = -20324.810722 eV Core-core repulsion = 17003.773330 eV Total energy + Delta-G solvation = -3321.037392 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.03991 -40.64546 -37.22741 -36.53349 -35.18706 -33.53902 -32.21553 -30.84866 -29.40476 -27.21177 -25.44146 -24.91845 -23.77279 -22.79760 -20.45562 -18.93653 -18.89093 -17.81996 -17.67967 -17.33425 -16.56028 -15.75660 -15.64801 -15.12421 -14.81458 -13.88744 -13.59563 -13.44052 -12.70980 -12.15891 -11.99451 -11.83244 -11.58034 -11.35950 -11.19755 -11.04830 -11.01270 -10.91320 -10.64811 -10.56462 -10.33172 -10.29505 -9.40945 -9.03045 -8.83786 -8.58948 -7.60901 -6.25755 -4.35417 0.29074 1.42357 1.69021 1.72599 2.91135 3.17006 3.24457 3.26063 3.42213 3.92213 4.22431 4.25885 4.52770 4.80119 5.06203 5.19112 5.63978 5.89756 5.96110 6.22916 6.49134 6.58647 6.61384 6.66079 6.78214 6.93284 7.06314 7.33723 7.51983 7.59220 7.76964 7.91155 7.94523 8.07671 8.43590 8.69863 9.31442 10.79195 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.029180 B = 0.004945 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.343538 B = 5660.951132 C = 5986.900992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.258 3.742 3 H 0.079 0.921 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.070 3.930 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.520 5.520 13 C 0.093 3.907 14 C 0.619 3.381 15 N -0.564 5.564 16 C 0.295 3.705 17 C -0.296 4.296 18 N 0.081 4.919 19 O -0.179 6.179 20 O -0.227 6.227 21 C 0.537 3.463 22 N -0.816 5.816 23 N -0.628 5.628 24 H 0.100 0.900 25 H 0.013 0.987 26 H 0.032 0.968 27 H 0.266 0.734 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.186 0.814 32 H 0.425 0.575 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.910 -2.733 -10.601 11.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.097 0.903 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.199 1.199 12 N -0.223 5.223 13 C -0.050 4.050 14 C 0.263 3.737 15 N -0.288 5.288 16 C 0.117 3.883 17 C -0.400 4.400 18 N 0.583 4.417 19 O -0.391 6.391 20 O -0.421 6.421 21 C 0.282 3.718 22 N -0.370 5.370 23 N -0.367 5.367 24 H 0.118 0.882 25 H 0.032 0.968 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.203 0.797 32 H 0.268 0.732 33 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 1.705 -3.634 -9.193 10.031 hybrid contribution 1.115 -0.137 -0.273 1.156 sum 2.821 -3.770 -9.466 10.573 Atomic orbital electron populations 1.22129 0.97390 0.99875 1.01256 1.19409 0.91345 0.94940 0.78495 0.90293 1.21235 1.32641 1.13475 0.89915 0.92075 1.24852 0.94653 0.94920 0.98964 1.69862 1.35732 1.22314 1.24177 0.86433 0.78729 0.79852 0.82046 1.20468 1.20940 1.19869 1.47582 1.43457 1.11338 1.19927 1.21703 0.99982 0.80801 1.02544 1.19393 0.84710 0.85073 0.84559 1.68518 1.20889 1.08069 1.31370 1.22749 0.82741 0.99540 0.83244 1.21825 1.20354 0.95631 1.02152 1.42982 0.98259 1.00644 0.99804 1.94503 1.65961 0.97912 1.80742 1.94138 1.54028 1.68655 1.25291 1.17704 0.83826 0.84549 0.85764 1.43258 1.50109 1.19760 1.23837 1.67747 1.24546 1.37538 1.06912 0.88204 0.96774 0.94848 0.92372 0.93119 0.91092 0.89516 0.79677 0.73213 0.76281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.97 37.15 0.33 -2.92 16 2 C 0.26 5.96 2.66 -69.08 -0.18 5.78 16 3 H 0.08 2.03 6.76 -51.92 -0.35 1.68 16 4 C -0.53 -13.37 7.99 -34.44 -0.28 -13.65 16 5 H 0.06 1.53 7.33 -52.48 -0.38 1.15 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -23.22 11.32 55.43 0.63 -22.59 16 8 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 12 N -0.52 -10.47 2.85 -177.62 -0.51 -10.98 16 13 C 0.09 1.56 9.44 59.85 0.56 2.12 16 14 C 0.62 12.06 8.18 -322.88 -2.64 9.42 16 15 N -0.56 -10.90 8.84 -14.01 -0.12 -11.02 16 16 C 0.29 4.79 10.81 -17.31 -0.19 4.60 16 17 C -0.30 -4.74 6.90 -79.46 -0.55 -5.28 16 18 N 0.08 1.29 4.45 34.20 0.15 1.44 16 19 O -0.18 -2.89 18.55 -29.46 -0.55 -3.44 16 20 O -0.23 -3.45 15.88 -29.46 -0.47 -3.92 16 21 C 0.54 8.35 7.81 -154.83 -1.21 7.14 16 22 N -0.82 -9.62 8.96 31.23 0.28 -9.34 16 23 N -0.63 -10.81 9.14 -13.17 -0.12 -10.93 16 24 H 0.10 2.42 6.07 -51.93 -0.32 2.11 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.03 0.68 7.67 -51.93 -0.40 0.29 16 27 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.10 7.33 -51.93 -0.38 0.72 16 30 H 0.09 1.49 7.02 -51.93 -0.36 1.13 16 31 H 0.19 2.47 7.70 -52.49 -0.40 2.06 16 32 H 0.42 4.80 5.44 -40.82 -0.22 4.58 16 33 H 0.41 3.83 8.95 -40.82 -0.37 3.46 16 LS Contribution 287.76 15.07 4.34 4.34 Total: -1.00 -27.37 287.76 -8.80 -36.16 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -3.17 Total: 6.51 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: -4.24 Total: 8.88 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: 0.31 Total: -63.42 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -1.01 Total: -7.36 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.37 -8.80 -36.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266869029.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.509 kcal (2) G-P(sol) polarization free energy of solvation -27.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds