Wall clock time and date at job start Mon Mar 30 2020 00:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47446 * 2 1 4 4 C 1.50702 * 109.47593 * 119.99752 * 2 1 3 5 5 H 1.08006 * 119.99941 * 119.99973 * 4 2 1 6 6 C 1.37869 * 120.00231 * 300.00324 * 4 2 1 7 7 N 1.31521 * 119.99849 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00248 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47115 * 90.00113 * 8 6 4 10 10 H 1.48501 * 109.47236 * 210.00091 * 8 6 4 11 11 H 1.48503 * 109.47098 * 329.99964 * 8 6 4 12 12 N 1.46500 * 109.47255 * 240.00126 * 2 1 3 13 13 C 1.46501 * 119.99994 * 300.00016 * 12 2 1 14 14 C 1.38400 * 120.00170 * 119.99432 * 12 2 1 15 15 N 1.32491 * 119.17677 * 0.02562 * 14 12 2 16 16 C 1.32489 * 120.93258 * 179.97438 * 15 14 12 17 17 C 1.38137 * 119.29008 * 359.97438 * 16 15 14 18 18 N 1.48011 * 120.75541 * 180.02562 * 17 16 15 19 19 O 1.21799 * 120.00258 * 354.01649 * 18 17 16 20 20 O 1.21800 * 120.00172 * 174.02141 * 18 17 16 21 21 C 1.39645 * 118.48451 * 0.02562 * 17 16 15 22 22 N 1.38537 * 120.47834 * 180.02562 * 21 17 16 23 23 N 1.32444 * 119.17416 * 179.72720 * 14 12 2 24 24 H 1.09005 * 109.46996 * 299.99515 * 1 2 3 25 25 H 1.08991 * 109.47627 * 59.99685 * 1 2 3 26 26 H 1.09007 * 109.47187 * 180.02562 * 1 2 3 27 27 H 0.97006 * 119.99694 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47423 * 89.99215 * 13 12 2 29 29 H 1.09001 * 109.46992 * 209.99782 * 13 12 2 30 30 H 1.09002 * 109.47197 * 329.99587 * 13 12 2 31 31 H 1.08002 * 120.35676 * 180.02562 * 16 15 14 32 32 H 0.96997 * 119.99942 * 5.60335 * 22 21 17 33 33 H 0.96998 * 119.99760 * 185.59903 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6534 -1.5885 1.1314 6 6 1.6994 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3216 -1.1202 4.0079 9 1 3.6298 -0.5457 4.4122 10 1 1.3434 -0.9492 5.1120 11 1 2.4861 -2.5661 3.7119 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.8139 -0.0179 -2.1072 15 7 3.1243 1.2501 -1.8812 16 6 3.8838 1.9270 -2.7298 17 6 4.3566 1.2968 -3.8645 18 7 5.2079 2.0220 -4.8340 19 8 5.4099 3.2150 -4.6942 20 8 5.7066 1.4258 -5.7718 21 6 4.0128 -0.0400 -4.0760 22 7 4.4646 -0.7124 -5.1998 23 7 3.2508 -0.6597 -3.1803 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 0.7096 1.1618 3.4845 28 1 0.7375 -2.1444 -1.9993 29 1 2.4629 -2.5818 -1.9864 30 1 1.5295 -2.5969 -0.4709 31 1 4.1314 2.9603 -2.5361 32 1 5.0889 -0.2817 -5.8044 33 1 4.1567 -1.6140 -5.3820 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266869029.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:31 Heat of formation + Delta-G solvation = 49.361647 kcal Electronic energy + Delta-G solvation = -20325.417215 eV Core-core repulsion = 17003.773330 eV Total energy + Delta-G solvation = -3321.643885 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.32527 -41.97938 -38.68702 -37.83323 -36.46632 -35.20772 -33.70987 -32.11626 -31.09243 -28.54628 -27.32483 -26.29387 -25.05764 -24.21993 -22.04552 -20.25652 -20.17604 -19.09629 -19.04407 -18.62831 -18.34663 -17.13720 -16.95691 -16.55323 -16.45134 -15.31871 -15.03886 -14.85610 -14.36748 -13.60946 -13.47454 -13.26994 -13.09745 -12.87528 -12.77903 -12.65433 -12.59010 -12.28590 -12.26331 -12.11957 -11.89614 -11.81838 -11.17156 -10.60077 -10.32020 -10.03159 -9.10715 -8.16379 -6.32346 -1.00394 0.14869 0.37426 0.43107 1.42206 1.43860 1.51666 1.58944 2.19455 2.40686 2.57220 2.99841 3.12861 3.22358 3.48402 3.96583 4.32722 4.62762 4.66449 4.74563 4.88095 4.95907 5.00953 5.32631 5.33897 5.44225 5.55375 5.76169 5.87783 5.96563 6.12482 6.34597 6.58109 6.70269 6.75101 7.12831 7.38171 8.87077 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.029180 B = 0.004945 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.343538 B = 5660.951132 C = 5986.900992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.266 3.734 3 H 0.048 0.952 4 C -0.542 4.542 5 H 0.057 0.943 6 C 0.026 3.974 7 N -0.909 5.909 8 Si 0.959 3.041 9 H -0.282 1.282 10 H -0.281 1.281 11 H -0.267 1.267 12 N -0.536 5.536 13 C 0.097 3.903 14 C 0.609 3.391 15 N -0.598 5.598 16 C 0.297 3.703 17 C -0.298 4.298 18 N 0.080 4.920 19 O -0.193 6.193 20 O -0.207 6.207 21 C 0.531 3.469 22 N -0.791 5.791 23 N -0.625 5.625 24 H 0.075 0.925 25 H 0.022 0.978 26 H 0.042 0.958 27 H 0.266 0.734 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.208 0.792 32 H 0.430 0.570 33 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.643 -3.730 -11.770 12.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.066 0.934 4 C -0.581 4.581 5 H 0.075 0.925 6 C -0.175 4.175 7 N -0.547 5.547 8 Si 0.785 3.215 9 H -0.208 1.208 10 H -0.206 1.206 11 H -0.191 1.191 12 N -0.241 5.241 13 C -0.045 4.045 14 C 0.253 3.747 15 N -0.324 5.324 16 C 0.122 3.878 17 C -0.401 4.401 18 N 0.583 4.417 19 O -0.401 6.401 20 O -0.406 6.406 21 C 0.275 3.725 22 N -0.345 5.345 23 N -0.365 5.365 24 H 0.094 0.906 25 H 0.041 0.959 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.225 0.775 32 H 0.274 0.726 33 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 2.467 -4.611 -10.414 11.653 hybrid contribution 0.996 0.180 -0.107 1.018 sum 3.463 -4.431 -10.521 11.930 Atomic orbital electron populations 1.21926 0.96821 1.00170 1.00415 1.18979 0.91663 0.93489 0.79349 0.93412 1.21474 1.32342 1.13289 0.90968 0.92513 1.25547 0.94908 0.95546 1.01459 1.69977 1.36709 1.23430 1.24612 0.85545 0.77878 0.79090 0.79029 1.20828 1.20601 1.19146 1.47370 1.44673 1.12347 1.19687 1.21774 1.01127 0.79176 1.02467 1.19511 0.84799 0.85319 0.85088 1.68514 1.22443 1.08634 1.32832 1.23090 0.81634 1.00271 0.82808 1.21876 1.20173 0.95908 1.02114 1.42944 0.98270 1.00643 0.99828 1.94520 1.66543 0.97972 1.81066 1.94129 1.53173 1.68560 1.24737 1.17866 0.83657 0.84688 0.86333 1.43204 1.48926 1.20197 1.22191 1.67755 1.24908 1.37203 1.06616 0.90630 0.95886 0.93870 0.92430 0.91622 0.89860 0.90337 0.77521 0.72600 0.74570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.97 8.97 71.98 0.65 -5.32 16 2 C 0.27 12.49 2.66 44.24 0.12 12.61 16 3 H 0.05 2.54 6.76 -2.38 -0.02 2.52 16 4 C -0.54 -27.32 7.99 25.60 0.20 -27.12 16 5 H 0.06 2.84 7.33 -2.91 -0.02 2.82 16 6 C 0.03 1.34 5.30 84.65 0.45 1.79 16 7 N -0.91 -48.49 11.32 21.45 0.24 -48.25 16 8 Si 0.96 40.82 29.54 68.60 2.03 42.84 16 9 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 10 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 12 N -0.54 -21.43 2.85 -715.88 -2.04 -23.47 16 13 C 0.10 3.14 9.44 127.77 1.21 4.35 16 14 C 0.61 23.41 8.18 261.51 2.14 25.55 16 15 N -0.60 -23.12 8.84 -198.25 -1.75 -24.87 16 16 C 0.30 9.41 10.81 84.57 0.91 10.32 16 17 C -0.30 -9.00 6.90 36.69 0.25 -8.75 16 18 N 0.08 2.37 4.45 -45.72 -0.20 2.17 16 19 O -0.19 -5.93 18.55 18.89 0.35 -5.58 16 20 O -0.21 -5.70 15.88 18.89 0.30 -5.40 16 21 C 0.53 15.36 7.81 133.19 1.04 16.40 16 22 N -0.79 -16.31 8.96 -55.11 -0.49 -16.80 16 23 N -0.63 -20.51 9.14 -195.56 -1.79 -22.30 16 24 H 0.08 3.73 6.07 -2.38 -0.01 3.72 16 25 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.04 1.77 7.67 -2.38 -0.02 1.75 16 27 H 0.27 13.55 8.31 -92.70 -0.77 12.78 16 28 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.08 2.45 7.33 -2.39 -0.02 2.43 16 30 H 0.08 2.64 7.02 -2.39 -0.02 2.62 16 31 H 0.21 5.34 7.70 -2.91 -0.02 5.32 16 32 H 0.43 8.33 5.44 -92.75 -0.50 7.82 16 33 H 0.42 6.56 8.95 -92.71 -0.83 5.73 16 Total: -1.00 -57.63 287.76 3.46 -54.17 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -0.15 Total: 17.66 kcal Atomic # 6 Polarization: 22.86 SS G_CDS: 6.97 Total: 29.83 kcal Atomic # 7 Polarization: -127.49 SS G_CDS: -6.04 Total: -133.53 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.65 Total: -10.97 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.84 kcal Total: -57.63 3.46 -54.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266869029.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.531 kcal (2) G-P(sol) polarization free energy of solvation -57.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds