Wall clock time and date at job start Mon Mar 30 2020 00:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.47015 * 2 1 4 4 C 1.50694 * 109.47458 * 239.99789 * 2 1 3 5 5 H 1.08004 * 120.00604 * 240.00354 * 4 2 1 6 6 C 1.37883 * 119.99890 * 59.99365 * 4 2 1 7 7 N 1.31513 * 119.99845 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00154 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46822 * 60.00043 * 8 6 4 10 10 H 1.48499 * 109.47370 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47178 * 300.00595 * 8 6 4 12 12 N 1.46504 * 109.47265 * 119.99715 * 2 1 3 13 13 C 1.46498 * 119.99909 * 59.99969 * 12 2 1 14 14 C 1.38395 * 119.99658 * 240.00177 * 12 2 1 15 15 N 1.32491 * 119.18159 * 359.97438 * 14 12 2 16 16 C 1.32489 * 120.93283 * 179.97438 * 15 14 12 17 17 C 1.38135 * 119.28822 * 0.02562 * 16 15 14 18 18 N 1.48023 * 120.75370 * 180.02562 * 17 16 15 19 19 O 1.21804 * 119.99963 * 353.94302 * 18 17 16 20 20 O 1.21795 * 120.00021 * 173.93492 * 18 17 16 21 21 C 1.39635 * 118.48959 * 0.02562 * 17 16 15 22 22 N 1.38539 * 120.48306 * 179.97438 * 21 17 16 23 23 N 1.32444 * 119.17216 * 180.02562 * 14 12 2 24 24 H 1.09000 * 109.46834 * 60.00265 * 1 2 3 25 25 H 1.08997 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46894 * 299.99791 * 1 2 3 27 27 H 0.97003 * 119.99596 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47395 * 270.00240 * 13 12 2 29 29 H 1.08997 * 109.47230 * 30.00339 * 13 12 2 30 30 H 1.09004 * 109.47002 * 150.00390 * 13 12 2 31 31 H 1.07999 * 120.35660 * 179.97438 * 16 15 14 32 32 H 0.96996 * 119.99976 * 340.28438 * 22 21 17 33 33 H 0.96996 * 119.99751 * 160.28148 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8259 -2.5204 -4.0075 10 1 1.8269 -0.4201 -5.2204 11 1 3.8064 -1.1210 -4.0081 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0931 1.4281 14 6 2.8140 -0.0178 2.1071 15 7 3.1245 1.2502 1.8810 16 6 3.8833 1.9274 2.7301 17 6 4.3551 1.2975 3.8653 18 7 5.2048 2.0234 4.8360 19 8 5.5866 3.1527 4.5859 20 8 5.5219 1.4916 5.8848 21 6 4.0123 -0.0395 4.0763 22 7 4.4633 -0.7116 5.2007 23 7 3.2469 -0.6581 3.1827 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.7094 1.1615 -3.4844 28 1 0.7377 -2.1443 1.9994 29 1 1.5296 -2.5968 0.4710 30 1 2.4630 -2.5818 1.9865 31 1 4.1309 2.9606 2.5363 32 1 5.2294 -0.3758 5.6918 33 1 4.0129 -1.5180 5.4969 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266869030.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:34 Heat of formation + Delta-G solvation = 49.411218 kcal Electronic energy + Delta-G solvation = -20323.423313 eV Core-core repulsion = 17001.781577 eV Total energy + Delta-G solvation = -3321.641735 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.29381 -41.97904 -38.68186 -37.78029 -36.46053 -35.21034 -33.70992 -32.10202 -31.09434 -28.54328 -27.32460 -26.28595 -25.04664 -24.18721 -22.02412 -20.25003 -20.14795 -19.09339 -19.04513 -18.56356 -18.33801 -17.17299 -16.98790 -16.58905 -16.39059 -15.33967 -15.06954 -14.80629 -14.36458 -13.60756 -13.46704 -13.20033 -13.09193 -12.87460 -12.76847 -12.64058 -12.57178 -12.27674 -12.23926 -12.13022 -11.88472 -11.82009 -11.17578 -10.60033 -10.33359 -10.02073 -9.10648 -8.16333 -6.32421 -0.99926 0.11640 0.37603 0.45083 1.43279 1.43792 1.50566 1.58559 2.20257 2.40684 2.55932 3.01589 3.12765 3.22934 3.48360 3.97388 4.32334 4.62531 4.66630 4.74539 4.87882 4.95669 5.00649 5.32337 5.34975 5.45563 5.55089 5.76090 5.90636 5.96348 6.12219 6.34957 6.59498 6.70698 6.74210 7.11763 7.37980 8.86905 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.029232 B = 0.004949 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.620608 B = 5655.896112 C = 5994.812434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.267 3.733 3 H 0.048 0.952 4 C -0.544 4.544 5 H 0.057 0.943 6 C 0.027 3.973 7 N -0.909 5.909 8 Si 0.959 3.041 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.279 1.279 12 N -0.536 5.536 13 C 0.097 3.903 14 C 0.608 3.392 15 N -0.597 5.597 16 C 0.295 3.705 17 C -0.294 4.294 18 N 0.078 4.922 19 O -0.200 6.200 20 O -0.197 6.197 21 C 0.532 3.468 22 N -0.795 5.795 23 N -0.622 5.622 24 H 0.075 0.925 25 H 0.042 0.958 26 H 0.022 0.978 27 H 0.267 0.733 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.207 0.793 32 H 0.429 0.571 33 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.628 -3.810 11.766 12.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.066 0.934 4 C -0.582 4.582 5 H 0.075 0.925 6 C -0.174 4.174 7 N -0.547 5.547 8 Si 0.784 3.216 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.205 1.205 12 N -0.241 5.241 13 C -0.045 4.045 14 C 0.251 3.749 15 N -0.323 5.323 16 C 0.120 3.880 17 C -0.397 4.397 18 N 0.582 4.418 19 O -0.406 6.406 20 O -0.401 6.401 21 C 0.276 3.724 22 N -0.348 5.348 23 N -0.361 5.361 24 H 0.094 0.906 25 H 0.061 0.939 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.224 0.776 32 H 0.270 0.730 33 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 2.425 -4.674 10.365 11.626 hybrid contribution 1.021 0.181 0.099 1.042 sum 3.446 -4.493 10.463 11.897 Atomic orbital electron populations 1.21928 0.96814 1.00164 1.00414 1.18975 0.91659 0.93471 0.79345 0.93435 1.21447 1.32457 1.13328 0.90984 0.92527 1.25548 0.94903 0.95523 1.01452 1.69965 1.36667 1.23369 1.24686 0.85601 0.78344 0.78958 0.78646 1.19184 1.20824 1.20507 1.47374 1.44587 1.12370 1.19755 1.21773 1.01130 0.79162 1.02472 1.19528 0.84842 0.85311 0.85209 1.68510 1.22418 1.08661 1.32696 1.23091 0.81814 1.00411 0.82702 1.21966 1.20141 0.95646 1.01931 1.42944 0.98305 1.00357 1.00176 1.94523 1.58661 1.04391 1.83047 1.94229 1.62005 1.69882 1.13974 1.17840 0.83785 0.84580 0.86204 1.42848 1.35801 1.31043 1.25087 1.67797 1.25322 1.36896 1.06057 0.90616 0.93877 0.95897 0.92412 0.91594 0.90325 0.89890 0.77601 0.72986 0.74422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.96 8.97 71.98 0.65 -5.32 16 2 C 0.27 12.51 2.66 44.24 0.12 12.62 16 3 H 0.05 2.53 6.76 -2.38 -0.02 2.51 16 4 C -0.54 -27.40 7.99 25.60 0.20 -27.20 16 5 H 0.06 2.83 7.33 -2.91 -0.02 2.81 16 6 C 0.03 1.36 5.30 84.66 0.45 1.81 16 7 N -0.91 -48.48 11.32 21.45 0.24 -48.23 16 8 Si 0.96 40.80 29.54 68.60 2.03 42.83 16 9 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 10 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 12 N -0.54 -21.43 2.85 -715.89 -2.04 -23.47 16 13 C 0.10 3.14 9.43 127.77 1.21 4.35 16 14 C 0.61 23.32 8.18 261.52 2.14 25.46 16 15 N -0.60 -23.09 8.84 -198.26 -1.75 -24.84 16 16 C 0.29 9.35 10.81 84.57 0.91 10.27 16 17 C -0.29 -8.87 6.90 36.69 0.25 -8.62 16 18 N 0.08 2.31 4.45 -45.71 -0.20 2.11 16 19 O -0.20 -6.21 18.55 18.88 0.35 -5.86 16 20 O -0.20 -5.43 15.99 18.89 0.30 -5.13 16 21 C 0.53 15.27 7.81 133.18 1.04 16.31 16 22 N -0.80 -16.10 8.68 -55.12 -0.48 -16.58 16 23 N -0.62 -20.34 9.14 -195.57 -1.79 -22.13 16 24 H 0.08 3.74 6.07 -2.39 -0.01 3.72 16 25 H 0.04 1.76 7.67 -2.39 -0.02 1.75 16 26 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 28 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.08 2.64 7.02 -2.39 -0.02 2.62 16 30 H 0.08 2.44 7.33 -2.39 -0.02 2.42 16 31 H 0.21 5.36 7.70 -2.91 -0.02 5.34 16 32 H 0.43 8.03 5.98 -92.71 -0.55 7.47 16 33 H 0.42 6.44 8.95 -92.71 -0.83 5.61 16 Total: -1.00 -57.76 288.14 3.43 -54.33 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -0.20 Total: 17.28 kcal Atomic # 6 Polarization: 22.72 SS G_CDS: 6.97 Total: 29.69 kcal Atomic # 7 Polarization: -127.12 SS G_CDS: -6.02 Total: -133.14 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.65 Total: -10.99 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -57.76 3.43 -54.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266869030.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.742 kcal (2) G-P(sol) polarization free energy of solvation -57.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds