Wall clock time and date at job start Mon Mar 30 2020 00:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37088 * 120.00091 * 2 1 4 4 H 1.08007 * 120.00415 * 204.41574 * 3 2 1 5 5 C 1.38947 * 120.00145 * 24.41964 * 3 2 1 6 6 N 1.31403 * 120.00094 * 12.60210 * 5 3 2 7 7 Si 1.86809 * 120.00048 * 192.60512 * 5 3 2 8 8 H 1.48495 * 109.47039 * 59.99736 * 7 5 3 9 9 H 1.48502 * 109.46855 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46901 * 299.99736 * 7 5 3 11 11 C 1.34781 * 119.99593 * 180.02562 * 2 1 3 12 12 O 1.21287 * 119.99521 * 180.02562 * 11 2 1 13 13 C 1.50703 * 120.00208 * 0.27254 * 11 2 1 14 14 C 1.52994 * 109.46967 * 179.72770 * 13 11 2 15 15 H 1.08999 * 109.47408 * 305.00078 * 14 13 11 16 16 O 1.42900 * 109.47389 * 64.99849 * 14 13 11 17 17 C 1.50701 * 109.47078 * 184.99946 * 14 13 11 18 18 C 1.38265 * 119.98830 * 279.72801 * 17 14 13 19 19 C 1.38222 * 120.04932 * 179.72557 * 18 17 14 20 20 C 1.38218 * 120.02909 * 0.54632 * 19 18 17 21 21 C 1.38436 * 119.97010 * 359.72581 * 20 19 18 22 22 F 1.35097 * 120.02605 * 180.02562 * 21 20 19 23 23 C 1.38177 * 119.98523 * 99.99598 * 17 14 13 24 24 H 1.09003 * 109.47259 * 265.83644 * 1 2 3 25 25 H 1.09002 * 109.47099 * 25.83537 * 1 2 3 26 26 H 1.09002 * 109.47216 * 145.83350 * 1 2 3 27 27 H 0.97002 * 120.00438 * 179.97438 * 6 5 3 28 28 H 1.09004 * 109.47040 * 299.72735 * 13 11 2 29 29 H 1.08997 * 109.46980 * 59.72275 * 13 11 2 30 30 H 0.96703 * 113.99518 * 60.00017 * 16 14 13 31 31 H 1.07998 * 119.97406 * 359.97438 * 18 17 14 32 32 H 1.08008 * 119.98562 * 180.27211 * 19 18 17 33 33 H 1.07997 * 120.01698 * 179.70975 * 20 19 18 34 34 H 1.08001 * 120.01450 * 0.03105 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1581 1.2291 -0.3866 5 6 1.5490 2.3367 0.4975 6 7 0.4347 2.2489 1.1883 7 14 2.3244 4.0071 0.1840 8 1 2.4051 4.2487 -1.2789 9 1 1.4942 5.0644 0.8149 10 1 3.6901 4.0360 0.7666 11 6 2.1388 -1.1673 -0.0005 12 8 3.3517 -1.1673 -0.0001 13 6 1.3853 -2.4724 -0.0073 14 6 2.3795 -3.6352 -0.0134 15 1 3.0637 -3.5240 -0.8546 16 8 3.1219 -3.6337 1.2077 17 6 1.6301 -4.9362 -0.1440 18 6 1.0332 -5.5043 0.9663 19 6 0.3407 -6.6946 0.8468 20 6 0.2538 -7.3241 -0.3806 21 6 0.8558 -6.7590 -1.4918 22 9 0.7710 -7.3730 -2.6922 23 6 1.5445 -5.5635 -1.3721 24 1 -0.3634 -0.0746 1.0250 25 1 -0.3633 0.9250 -0.4479 26 1 -0.3634 -0.8503 -0.5771 27 1 0.0150 3.0513 1.5360 28 1 0.7586 -2.5347 0.8824 29 1 0.7586 -2.5254 -0.8975 30 1 2.5758 -3.7292 2.0000 31 1 1.1047 -5.0157 1.9267 32 1 -0.1289 -7.1353 1.7139 33 1 -0.2834 -8.2565 -0.4728 34 1 2.0149 -5.1220 -2.2383 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270562717.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:15 Heat of formation + Delta-G solvation = -98.961469 kcal Electronic energy + Delta-G solvation = -19849.527336 eV Core-core repulsion = 16469.238966 eV Total energy + Delta-G solvation = -3380.288371 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.00318 -39.75414 -38.34930 -36.42609 -34.53682 -32.13718 -31.57511 -30.56736 -29.44692 -26.29176 -25.01296 -23.61957 -22.91840 -21.20775 -18.98712 -17.89366 -16.83474 -16.60435 -16.33042 -15.93205 -15.75258 -15.68384 -15.11221 -14.46225 -14.17912 -13.96505 -13.69302 -13.49600 -13.05553 -12.67082 -12.17056 -12.10453 -11.81664 -11.63687 -11.45187 -11.25369 -11.08763 -10.88620 -10.74106 -10.38502 -10.25370 -9.87701 -9.11179 -8.97666 -8.82203 -8.30915 -7.62537 -6.30145 -3.86035 1.00180 1.05796 3.20676 3.25700 3.29822 3.41908 3.93042 4.03990 4.16712 4.46425 4.62626 4.74130 4.83347 5.00086 5.08186 5.14184 5.22856 5.35573 5.49651 5.66418 5.86882 5.91528 5.97258 6.00389 6.08194 6.18758 6.37853 6.50751 6.73806 6.84251 7.18428 7.58766 7.92167 8.16776 8.51971 9.22570 9.45448 10.02908 10.75114 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.036956 B = 0.004011 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.474069 B = 6978.630137 C = 7011.592982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.450 5.450 3 C -0.305 4.305 4 H 0.097 0.903 5 C 0.030 3.970 6 N -0.885 5.885 7 Si 0.925 3.075 8 H -0.274 1.274 9 H -0.285 1.285 10 H -0.273 1.273 11 C 0.449 3.551 12 O -0.574 6.574 13 C -0.159 4.159 14 C 0.167 3.833 15 H 0.114 0.886 16 O -0.533 6.533 17 C -0.078 4.078 18 C -0.123 4.123 19 C -0.088 4.088 20 C -0.160 4.160 21 C 0.098 3.902 22 F -0.142 7.142 23 C -0.144 4.144 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.024 0.976 27 H 0.267 0.733 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.364 0.636 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.964 -15.285 -1.214 16.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.170 5.170 3 C -0.433 4.433 4 H 0.114 0.886 5 C -0.173 4.173 6 N -0.525 5.525 7 Si 0.752 3.248 8 H -0.200 1.200 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.237 3.763 12 O -0.457 6.457 13 C -0.199 4.199 14 C 0.107 3.893 15 H 0.132 0.868 16 O -0.336 6.336 17 C -0.079 4.079 18 C -0.141 4.141 19 C -0.106 4.106 20 C -0.179 4.179 21 C 0.079 3.921 22 F -0.120 7.120 23 C -0.163 4.163 24 H 0.068 0.932 25 H 0.092 0.908 26 H 0.042 0.958 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.211 0.789 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.005 -15.068 -1.582 15.671 hybrid contribution -0.595 0.683 0.074 0.909 sum -4.601 -14.385 -1.508 15.178 Atomic orbital electron populations 1.21455 0.81462 0.99805 1.00407 1.43569 1.05310 1.04761 1.63388 1.19588 1.00583 0.84216 1.38929 0.88570 1.25324 0.96652 1.00081 0.95209 1.69975 1.19316 1.29643 1.33543 0.86011 0.79075 0.81026 0.78664 1.19970 1.20994 1.19780 1.19853 0.88096 0.84532 0.83836 1.90561 1.13641 1.86846 1.54668 1.22297 0.99018 0.94934 1.03673 1.20551 0.92051 0.87252 0.89484 0.86842 1.86783 1.36347 1.95907 1.14610 1.20707 0.96863 0.97460 0.92836 1.21019 0.98029 0.96274 0.98788 1.20970 0.97889 0.94906 0.96827 1.21121 1.02706 1.01809 0.92286 1.17686 1.00459 0.93032 0.80918 1.91494 1.94708 1.82384 1.43437 1.21032 1.01451 0.94796 0.99041 0.93163 0.90778 0.95785 0.92287 0.89876 0.89583 0.78936 0.85266 0.84939 0.84927 0.84442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.48 8.45 59.85 0.51 2.98 16 2 N -0.45 -11.50 3.01 -122.19 -0.37 -11.86 16 3 C -0.31 -8.57 9.24 -14.94 -0.14 -8.70 16 4 H 0.10 2.83 7.45 -52.48 -0.39 2.44 16 5 C 0.03 0.80 5.04 -17.47 -0.09 0.71 16 6 N -0.89 -23.66 10.83 55.50 0.60 -23.06 16 7 Si 0.93 20.88 29.57 -169.99 -5.03 15.86 16 8 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 C 0.45 10.75 7.51 -10.98 -0.08 10.67 16 12 O -0.57 -15.88 15.13 -8.88 -0.13 -16.01 16 13 C -0.16 -2.73 3.97 -27.88 -0.11 -2.84 16 14 C 0.17 2.64 2.75 -27.89 -0.08 2.56 16 15 H 0.11 1.96 7.82 -51.93 -0.41 1.56 16 16 O -0.53 -9.12 12.42 -49.66 -0.62 -9.74 16 17 C -0.08 -1.00 4.97 -104.63 -0.52 -1.52 16 18 C -0.12 -1.33 9.32 -39.58 -0.37 -1.69 16 19 C -0.09 -0.82 10.04 -39.59 -0.40 -1.22 16 20 C -0.16 -1.61 10.03 -39.52 -0.40 -2.01 16 21 C 0.10 1.17 7.30 -39.42 -0.29 0.88 16 22 F -0.14 -1.75 17.27 2.25 0.04 -1.72 16 23 C -0.14 -1.80 9.65 -39.51 -0.38 -2.18 16 24 H 0.05 1.13 7.83 -51.93 -0.41 0.72 16 25 H 0.07 1.74 6.80 -51.93 -0.35 1.38 16 26 H 0.02 0.43 6.60 -51.93 -0.34 0.09 16 27 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.08 1.30 8.11 -51.93 -0.42 0.88 16 29 H 0.09 1.34 7.40 -51.93 -0.38 0.95 16 30 H 0.36 4.74 7.49 45.56 0.34 5.08 16 31 H 0.13 1.16 6.77 -52.49 -0.36 0.80 16 32 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 33 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.14 1.59 8.04 -52.49 -0.42 1.17 16 LS Contribution 296.56 15.07 4.47 4.47 Total: -1.00 -32.69 296.56 -6.50 -39.19 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -3.12 Total: 5.23 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -2.34 Total: -2.36 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.23 Total: -34.92 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.75 Total: -25.76 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.69 -6.50 -39.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270562717.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.767 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds