Wall clock time and date at job start Mon Mar 30 2020 00:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37088 * 120.00091 * 2 1 4 4 H 1.08007 * 120.00415 * 204.41574 * 3 2 1 5 5 C 1.38947 * 120.00145 * 24.41964 * 3 2 1 6 6 N 1.31403 * 120.00094 * 12.60210 * 5 3 2 7 7 Si 1.86809 * 120.00048 * 192.60512 * 5 3 2 8 8 H 1.48495 * 109.47039 * 59.99736 * 7 5 3 9 9 H 1.48502 * 109.46855 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46901 * 299.99736 * 7 5 3 11 11 C 1.34781 * 119.99593 * 180.02562 * 2 1 3 12 12 O 1.21287 * 119.99521 * 180.02562 * 11 2 1 13 13 C 1.50703 * 120.00208 * 0.27254 * 11 2 1 14 14 C 1.52994 * 109.46967 * 179.72770 * 13 11 2 15 15 H 1.08999 * 109.47408 * 305.00078 * 14 13 11 16 16 O 1.42900 * 109.47389 * 64.99849 * 14 13 11 17 17 C 1.50701 * 109.47078 * 184.99946 * 14 13 11 18 18 C 1.38265 * 119.98830 * 279.72801 * 17 14 13 19 19 C 1.38222 * 120.04932 * 179.72557 * 18 17 14 20 20 C 1.38218 * 120.02909 * 0.54632 * 19 18 17 21 21 C 1.38436 * 119.97010 * 359.72581 * 20 19 18 22 22 F 1.35097 * 120.02605 * 180.02562 * 21 20 19 23 23 C 1.38177 * 119.98523 * 99.99598 * 17 14 13 24 24 H 1.09003 * 109.47259 * 265.83644 * 1 2 3 25 25 H 1.09002 * 109.47099 * 25.83537 * 1 2 3 26 26 H 1.09002 * 109.47216 * 145.83350 * 1 2 3 27 27 H 0.97002 * 120.00438 * 179.97438 * 6 5 3 28 28 H 1.09004 * 109.47040 * 299.72735 * 13 11 2 29 29 H 1.08997 * 109.46980 * 59.72275 * 13 11 2 30 30 H 0.96703 * 113.99518 * 60.00017 * 16 14 13 31 31 H 1.07998 * 119.97406 * 359.97438 * 18 17 14 32 32 H 1.08008 * 119.98562 * 180.27211 * 19 18 17 33 33 H 1.07997 * 120.01698 * 179.70975 * 20 19 18 34 34 H 1.08001 * 120.01450 * 0.03105 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1581 1.2291 -0.3866 5 6 1.5490 2.3367 0.4975 6 7 0.4347 2.2489 1.1883 7 14 2.3244 4.0071 0.1840 8 1 2.4051 4.2487 -1.2789 9 1 1.4942 5.0644 0.8149 10 1 3.6901 4.0360 0.7666 11 6 2.1388 -1.1673 -0.0005 12 8 3.3517 -1.1673 -0.0001 13 6 1.3853 -2.4724 -0.0073 14 6 2.3795 -3.6352 -0.0134 15 1 3.0637 -3.5240 -0.8546 16 8 3.1219 -3.6337 1.2077 17 6 1.6301 -4.9362 -0.1440 18 6 1.0332 -5.5043 0.9663 19 6 0.3407 -6.6946 0.8468 20 6 0.2538 -7.3241 -0.3806 21 6 0.8558 -6.7590 -1.4918 22 9 0.7710 -7.3730 -2.6922 23 6 1.5445 -5.5635 -1.3721 24 1 -0.3634 -0.0746 1.0250 25 1 -0.3633 0.9250 -0.4479 26 1 -0.3634 -0.8503 -0.5771 27 1 0.0150 3.0513 1.5360 28 1 0.7586 -2.5347 0.8824 29 1 0.7586 -2.5254 -0.8975 30 1 2.5758 -3.7292 2.0000 31 1 1.1047 -5.0157 1.9267 32 1 -0.1289 -7.1353 1.7139 33 1 -0.2834 -8.2565 -0.4728 34 1 2.0149 -5.1220 -2.2383 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270562717.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:15 Heat of formation + Delta-G solvation = -120.450007 kcal Electronic energy + Delta-G solvation = -19850.459149 eV Core-core repulsion = 16469.238966 eV Total energy + Delta-G solvation = -3381.220183 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.90414 -40.94902 -39.91363 -37.71625 -36.49271 -33.74133 -33.06471 -31.47007 -30.71590 -28.13930 -26.63835 -25.11528 -23.74951 -22.28669 -20.73132 -19.02705 -18.76483 -17.74874 -17.53823 -17.13325 -17.02856 -16.60495 -16.58495 -16.22665 -15.79875 -15.32578 -14.99431 -14.58088 -14.24340 -14.07524 -13.68514 -13.41984 -13.21076 -13.10205 -12.86431 -12.66861 -12.64903 -12.56391 -12.30709 -12.13678 -11.89020 -11.12832 -10.96626 -10.32246 -9.94122 -9.66109 -9.62342 -8.32599 -5.97001 0.14402 0.22474 1.39637 1.40929 1.51223 2.08474 2.28787 2.56869 2.99989 3.10371 3.25032 3.60885 3.62658 3.82315 3.92498 4.10358 4.13514 4.22581 4.41454 4.47350 4.56475 4.77396 4.81682 4.90162 5.04860 5.09815 5.15478 5.35709 5.37966 5.45795 5.51889 5.91798 6.12702 6.51957 6.84818 7.20682 7.51188 8.09236 8.70437 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.036956 B = 0.004011 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.474069 B = 6978.630137 C = 7011.592982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.469 5.469 3 C -0.345 4.345 4 H 0.067 0.933 5 C -0.001 4.001 6 N -0.897 5.897 7 Si 0.986 3.014 8 H -0.268 1.268 9 H -0.269 1.269 10 H -0.278 1.278 11 C 0.439 3.561 12 O -0.621 6.621 13 C -0.143 4.143 14 C 0.175 3.825 15 H 0.087 0.913 16 O -0.558 6.558 17 C -0.089 4.089 18 C -0.122 4.122 19 C -0.080 4.080 20 C -0.152 4.152 21 C 0.081 3.919 22 F -0.149 7.149 23 C -0.157 4.157 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.273 0.727 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.381 0.619 31 H 0.149 0.851 32 H 0.169 0.831 33 H 0.158 0.842 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.801 -16.486 -0.384 17.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.188 5.188 3 C -0.473 4.473 4 H 0.085 0.915 5 C -0.203 4.203 6 N -0.536 5.536 7 Si 0.810 3.190 8 H -0.193 1.193 9 H -0.193 1.193 10 H -0.204 1.204 11 C 0.229 3.771 12 O -0.508 6.508 13 C -0.183 4.183 14 C 0.115 3.885 15 H 0.105 0.895 16 O -0.364 6.364 17 C -0.089 4.089 18 C -0.140 4.140 19 C -0.097 4.097 20 C -0.171 4.171 21 C 0.062 3.938 22 F -0.128 7.128 23 C -0.176 4.176 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.230 0.770 31 H 0.166 0.834 32 H 0.186 0.814 33 H 0.175 0.825 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.887 -16.281 -0.745 17.329 hybrid contribution -0.027 0.991 -0.150 1.003 sum -5.913 -15.290 -0.896 16.418 Atomic orbital electron populations 1.21421 0.79475 1.00687 1.00569 1.43862 1.06669 1.04664 1.63637 1.19539 1.00348 0.86404 1.41030 0.91483 1.26029 0.97068 1.02782 0.94405 1.70036 1.19700 1.30735 1.33118 0.85114 0.78005 0.77111 0.78817 1.19304 1.19347 1.20391 1.20970 0.88004 0.86221 0.81914 1.90522 1.16075 1.87880 1.56319 1.22230 0.98964 0.91367 1.05738 1.20300 0.91341 0.88530 0.88360 0.89498 1.86736 1.37839 1.96088 1.15767 1.20321 0.98212 0.96501 0.93892 1.21310 0.97220 0.96754 0.98744 1.21361 0.96769 0.93937 0.97667 1.21491 1.01498 1.02370 0.91738 1.17869 1.01393 0.93172 0.81400 1.91475 1.94845 1.82433 1.44016 1.21071 1.02005 0.95458 0.99052 0.93751 0.92692 0.91487 0.91753 0.87427 0.87402 0.77035 0.83354 0.81380 0.82461 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.24 8.45 127.77 1.08 6.32 16 2 N -0.47 -24.22 3.01 -658.88 -1.98 -26.20 16 3 C -0.35 -19.93 9.24 84.04 0.78 -19.15 16 4 H 0.07 4.16 7.45 -2.91 -0.02 4.14 16 5 C 0.00 -0.06 5.04 84.93 0.43 0.36 16 6 N -0.90 -47.66 10.83 21.66 0.23 -47.42 16 7 Si 0.99 42.95 29.57 68.60 2.03 44.98 16 8 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 9 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 C 0.44 21.33 7.51 87.66 0.66 21.99 16 12 O -0.62 -35.77 15.13 10.74 0.16 -35.61 16 13 C -0.14 -4.76 3.97 29.85 0.12 -4.64 16 14 C 0.17 5.48 2.75 29.85 0.08 5.57 16 15 H 0.09 3.15 7.82 -2.39 -0.02 3.13 16 16 O -0.56 -18.98 12.42 -135.18 -1.68 -20.66 16 17 C -0.09 -2.14 4.97 -19.87 -0.10 -2.24 16 18 C -0.12 -2.24 9.32 22.27 0.21 -2.04 16 19 C -0.08 -1.15 10.04 22.26 0.22 -0.93 16 20 C -0.15 -2.54 10.03 22.31 0.22 -2.31 16 21 C 0.08 1.78 7.30 22.38 0.16 1.94 16 22 F -0.15 -3.53 17.27 44.97 0.78 -2.76 16 23 C -0.16 -3.78 9.65 22.31 0.22 -3.57 16 24 H 0.04 1.94 7.83 -2.39 -0.02 1.92 16 25 H 0.05 2.55 6.80 -2.39 -0.02 2.54 16 26 H 0.07 2.26 6.60 -2.39 -0.02 2.25 16 27 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 28 H 0.11 3.07 8.11 -2.39 -0.02 3.05 16 29 H 0.11 3.13 7.40 -2.39 -0.02 3.11 16 30 H 0.38 9.41 7.49 -74.06 -0.56 8.86 16 31 H 0.15 2.09 6.77 -2.91 -0.02 2.07 16 32 H 0.17 1.27 8.06 -2.91 -0.02 1.24 16 33 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.13 3.17 8.04 -2.91 -0.02 3.14 16 Total: -1.00 -73.00 296.56 4.20 -68.81 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.58 Total: 17.54 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 4.08 Total: 1.31 kcal Atomic # 7 Polarization: -71.88 SS G_CDS: -1.75 Total: -73.63 kcal Atomic # 8 Polarization: -54.75 SS G_CDS: -1.52 Total: -56.27 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -73.00 4.20 -68.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270562717.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.641 kcal (2) G-P(sol) polarization free energy of solvation -73.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds