Wall clock time and date at job start Mon Mar 30 2020 00:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37096 * 119.99396 * 2 1 4 4 H 1.08004 * 119.99752 * 204.39350 * 3 2 1 5 5 C 1.38948 * 120.00411 * 24.39574 * 3 2 1 6 6 N 1.31411 * 120.00065 * 12.63525 * 5 3 2 7 7 Si 1.86802 * 120.00208 * 192.63785 * 5 3 2 8 8 H 1.48502 * 109.46869 * 89.99399 * 7 5 3 9 9 H 1.48497 * 109.47140 * 210.00043 * 7 5 3 10 10 H 1.48504 * 109.47031 * 330.00127 * 7 5 3 11 11 C 1.34768 * 120.00077 * 179.97438 * 2 1 3 12 12 O 1.21302 * 119.99773 * 179.97438 * 11 2 1 13 13 C 1.50700 * 120.00546 * 0.02562 * 11 2 1 14 14 C 1.52998 * 109.47430 * 179.97438 * 13 11 2 15 15 H 1.08993 * 109.47530 * 55.00018 * 14 13 11 16 16 O 1.42908 * 109.46925 * 294.99662 * 14 13 11 17 17 C 1.50699 * 109.47112 * 174.99990 * 14 13 11 18 18 C 1.38261 * 119.98765 * 264.99785 * 17 14 13 19 19 C 1.38229 * 120.05292 * 179.97438 * 18 17 14 20 20 C 1.38210 * 120.02537 * 0.02562 * 19 18 17 21 21 C 1.38442 * 119.97439 * 359.97438 * 20 19 18 22 22 F 1.35100 * 120.02492 * 180.02562 * 21 20 19 23 23 C 1.38176 * 119.98866 * 84.97464 * 17 14 13 24 24 H 1.08997 * 109.47375 * 265.86150 * 1 2 3 25 25 H 1.08992 * 109.47358 * 25.86657 * 1 2 3 26 26 H 1.09002 * 109.46804 * 145.86428 * 1 2 3 27 27 H 0.96995 * 119.99996 * 179.97438 * 6 5 3 28 28 H 1.09006 * 109.46927 * 59.99271 * 13 11 2 29 29 H 1.08999 * 109.46823 * 300.00259 * 13 11 2 30 30 H 0.96705 * 113.99493 * 300.00153 * 16 14 13 31 31 H 1.08002 * 119.97620 * 359.70711 * 18 17 14 32 32 H 1.08006 * 119.98254 * 179.97438 * 19 18 17 33 33 H 1.08003 * 120.01519 * 179.97438 * 20 19 18 34 34 H 1.07998 * 120.01674 * 0.04625 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1581 1.2292 -0.3863 5 6 1.5487 2.3370 0.4970 6 7 0.4344 2.2491 1.1881 7 14 2.3235 4.0074 0.1827 8 1 1.7868 4.5720 -1.0816 9 1 2.0032 4.9213 1.3085 10 1 3.7967 3.8566 0.0713 11 6 2.1389 -1.1671 0.0005 12 8 3.3519 -1.1670 0.0001 13 6 1.3855 -2.4723 0.0005 14 6 2.3798 -3.6351 0.0005 15 1 3.0639 -3.5283 0.8423 16 8 3.1221 -3.6272 -1.2206 17 6 1.6305 -4.9368 0.1244 18 6 1.4563 -5.5184 1.3665 19 6 0.7687 -6.7120 1.4817 20 6 0.2551 -7.3257 0.3550 21 6 0.4289 -6.7444 -0.8894 22 9 -0.0732 -7.3432 -1.9914 23 6 1.1174 -5.5483 -1.0035 24 1 -0.3634 -0.0742 1.0249 25 1 -0.3633 0.9246 -0.4483 26 1 -0.3633 -0.8506 -0.5767 27 1 0.0146 3.0516 1.5353 28 1 0.7591 -2.5302 -0.8897 29 1 0.7585 -2.5298 0.8903 30 1 2.5759 -3.7186 -2.0134 31 1 1.8614 -5.0419 2.2471 32 1 0.6336 -7.1655 2.4526 33 1 -0.2818 -8.2586 0.4451 34 1 1.2539 -5.0941 -1.9738 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270562719.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:18 Heat of formation + Delta-G solvation = -98.943704 kcal Electronic energy + Delta-G solvation = -19872.781798 eV Core-core repulsion = 16492.494197 eV Total energy + Delta-G solvation = -3380.287600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.00860 -39.75095 -38.35217 -36.46478 -34.54119 -32.03000 -31.53026 -30.74166 -29.41342 -26.29546 -25.02895 -23.66543 -22.76365 -21.28361 -19.00218 -17.95141 -16.82275 -16.63294 -16.30658 -15.90620 -15.75375 -15.68897 -15.02586 -14.55609 -14.11236 -14.01251 -13.68776 -13.52808 -13.07625 -12.67808 -12.19086 -11.99996 -11.94658 -11.51740 -11.46040 -11.24321 -11.08798 -10.92728 -10.78049 -10.33958 -10.24865 -9.89987 -9.12034 -8.98608 -8.80320 -8.31220 -7.62899 -6.30510 -3.86458 1.01241 1.05628 3.17833 3.26325 3.32099 3.42452 3.92798 4.05074 4.16080 4.46611 4.60552 4.70100 4.82475 5.00569 5.12869 5.14661 5.22126 5.33396 5.51295 5.66004 5.86127 5.91293 5.95523 6.06020 6.07629 6.20170 6.36437 6.50785 6.74354 6.84187 7.18641 7.58921 7.89072 8.16997 8.51715 9.22334 9.45264 10.02583 10.74798 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.037250 B = 0.004060 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.501754 B = 6894.556949 C = 7007.564265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.451 5.451 3 C -0.305 4.305 4 H 0.098 0.902 5 C 0.029 3.971 6 N -0.885 5.885 7 Si 0.925 3.075 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.450 3.550 12 O -0.574 6.574 13 C -0.159 4.159 14 C 0.166 3.834 15 H 0.117 0.883 16 O -0.534 6.534 17 C -0.078 4.078 18 C -0.120 4.120 19 C -0.089 4.089 20 C -0.161 4.161 21 C 0.099 3.901 22 F -0.142 7.142 23 C -0.148 4.148 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.023 0.977 27 H 0.267 0.733 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.363 0.637 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.502 -15.309 -0.890 15.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.171 5.171 3 C -0.433 4.433 4 H 0.115 0.885 5 C -0.173 4.173 6 N -0.525 5.525 7 Si 0.752 3.248 8 H -0.204 1.204 9 H -0.210 1.210 10 H -0.193 1.193 11 C 0.237 3.763 12 O -0.457 6.457 13 C -0.199 4.199 14 C 0.107 3.893 15 H 0.135 0.865 16 O -0.338 6.338 17 C -0.078 4.078 18 C -0.138 4.138 19 C -0.107 4.107 20 C -0.180 4.180 21 C 0.080 3.920 22 F -0.120 7.120 23 C -0.166 4.166 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.042 0.958 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.209 0.791 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.552 -15.096 -0.429 15.514 hybrid contribution -0.704 0.691 -0.564 1.137 sum -4.257 -14.405 -0.993 15.054 Atomic orbital electron populations 1.21454 0.81466 0.99769 1.00446 1.43571 1.05313 1.04779 1.63389 1.19655 1.00591 0.84198 1.38814 0.88475 1.25331 0.96675 1.00091 0.95227 1.69988 1.19357 1.29527 1.33595 0.85939 0.79700 0.81370 0.77790 1.20425 1.20993 1.19347 1.19849 0.88087 0.84526 0.83798 1.90566 1.13623 1.86864 1.54672 1.22305 0.99018 0.94927 1.03696 1.20591 0.92058 0.87267 0.89434 0.86514 1.86781 1.36423 1.95971 1.14625 1.20717 0.96715 0.97468 0.92950 1.21142 0.99541 0.95766 0.97397 1.21008 0.96470 0.95009 0.98170 1.21123 1.03668 1.01797 0.91368 1.17645 0.98266 0.93168 0.82936 1.91495 1.85442 1.83084 1.52023 1.20883 1.00294 0.95331 1.00142 0.93111 0.90787 0.95833 0.92336 0.90172 0.89286 0.79057 0.84877 0.84903 0.84931 0.84818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.48 8.44 59.85 0.51 2.99 16 2 N -0.45 -11.51 3.01 -122.19 -0.37 -11.87 16 3 C -0.30 -8.55 9.24 -14.93 -0.14 -8.68 16 4 H 0.10 2.87 7.45 -52.48 -0.39 2.48 16 5 C 0.03 0.78 5.04 -17.47 -0.09 0.70 16 6 N -0.88 -23.67 10.83 55.50 0.60 -23.07 16 7 Si 0.93 20.88 29.57 -169.99 -5.03 15.85 16 8 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 C 0.45 10.76 7.51 -10.99 -0.08 10.68 16 12 O -0.57 -15.86 15.13 -8.88 -0.13 -15.99 16 13 C -0.16 -2.75 3.97 -27.88 -0.11 -2.86 16 14 C 0.17 2.63 2.76 -27.88 -0.08 2.56 16 15 H 0.12 2.01 7.86 -51.93 -0.41 1.60 16 16 O -0.53 -9.10 12.37 -49.65 -0.61 -9.71 16 17 C -0.08 -1.00 5.00 -104.64 -0.52 -1.52 16 18 C -0.12 -1.35 9.68 -39.58 -0.38 -1.73 16 19 C -0.09 -0.85 10.04 -39.59 -0.40 -1.25 16 20 C -0.16 -1.62 10.03 -39.52 -0.40 -2.02 16 21 C 0.10 1.16 7.30 -39.42 -0.29 0.88 16 22 F -0.14 -1.73 17.27 2.25 0.04 -1.69 16 23 C -0.15 -1.78 9.31 -39.52 -0.37 -2.15 16 24 H 0.05 1.14 7.83 -51.93 -0.41 0.74 16 25 H 0.07 1.74 6.80 -51.93 -0.35 1.39 16 26 H 0.02 0.42 6.61 -51.93 -0.34 0.08 16 27 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 28 H 0.08 1.23 7.41 -51.93 -0.38 0.85 16 29 H 0.09 1.42 8.11 -51.93 -0.42 1.00 16 30 H 0.36 4.73 7.39 45.56 0.34 5.07 16 31 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 33 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 34 H 0.13 1.42 6.61 -52.49 -0.35 1.07 16 LS Contribution 296.38 15.07 4.47 4.47 Total: -1.00 -32.60 296.38 -6.50 -39.11 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -3.12 Total: 5.33 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -2.35 Total: -2.42 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.23 Total: -34.94 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.75 Total: -25.70 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.60 -6.50 -39.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270562719.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.835 kcal (2) G-P(sol) polarization free energy of solvation -32.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds