Wall clock time and date at job start Mon Mar 30 2020 00:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37096 * 119.99396 * 2 1 4 4 H 1.08004 * 119.99752 * 204.39350 * 3 2 1 5 5 C 1.38948 * 120.00411 * 24.39574 * 3 2 1 6 6 N 1.31411 * 120.00065 * 12.63525 * 5 3 2 7 7 Si 1.86802 * 120.00208 * 192.63785 * 5 3 2 8 8 H 1.48502 * 109.46869 * 89.99399 * 7 5 3 9 9 H 1.48497 * 109.47140 * 210.00043 * 7 5 3 10 10 H 1.48504 * 109.47031 * 330.00127 * 7 5 3 11 11 C 1.34768 * 120.00077 * 179.97438 * 2 1 3 12 12 O 1.21302 * 119.99773 * 179.97438 * 11 2 1 13 13 C 1.50700 * 120.00546 * 0.02562 * 11 2 1 14 14 C 1.52998 * 109.47430 * 179.97438 * 13 11 2 15 15 H 1.08993 * 109.47530 * 55.00018 * 14 13 11 16 16 O 1.42908 * 109.46925 * 294.99662 * 14 13 11 17 17 C 1.50699 * 109.47112 * 174.99990 * 14 13 11 18 18 C 1.38261 * 119.98765 * 264.99785 * 17 14 13 19 19 C 1.38229 * 120.05292 * 179.97438 * 18 17 14 20 20 C 1.38210 * 120.02537 * 0.02562 * 19 18 17 21 21 C 1.38442 * 119.97439 * 359.97438 * 20 19 18 22 22 F 1.35100 * 120.02492 * 180.02562 * 21 20 19 23 23 C 1.38176 * 119.98866 * 84.97464 * 17 14 13 24 24 H 1.08997 * 109.47375 * 265.86150 * 1 2 3 25 25 H 1.08992 * 109.47358 * 25.86657 * 1 2 3 26 26 H 1.09002 * 109.46804 * 145.86428 * 1 2 3 27 27 H 0.96995 * 119.99996 * 179.97438 * 6 5 3 28 28 H 1.09006 * 109.46927 * 59.99271 * 13 11 2 29 29 H 1.08999 * 109.46823 * 300.00259 * 13 11 2 30 30 H 0.96705 * 113.99493 * 300.00153 * 16 14 13 31 31 H 1.08002 * 119.97620 * 359.70711 * 18 17 14 32 32 H 1.08006 * 119.98254 * 179.97438 * 19 18 17 33 33 H 1.08003 * 120.01519 * 179.97438 * 20 19 18 34 34 H 1.07998 * 120.01674 * 0.04625 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1581 1.2292 -0.3863 5 6 1.5487 2.3370 0.4970 6 7 0.4344 2.2491 1.1881 7 14 2.3235 4.0074 0.1827 8 1 1.7868 4.5720 -1.0816 9 1 2.0032 4.9213 1.3085 10 1 3.7967 3.8566 0.0713 11 6 2.1389 -1.1671 0.0005 12 8 3.3519 -1.1670 0.0001 13 6 1.3855 -2.4723 0.0005 14 6 2.3798 -3.6351 0.0005 15 1 3.0639 -3.5283 0.8423 16 8 3.1221 -3.6272 -1.2206 17 6 1.6305 -4.9368 0.1244 18 6 1.4563 -5.5184 1.3665 19 6 0.7687 -6.7120 1.4817 20 6 0.2551 -7.3257 0.3550 21 6 0.4289 -6.7444 -0.8894 22 9 -0.0732 -7.3432 -1.9914 23 6 1.1174 -5.5483 -1.0035 24 1 -0.3634 -0.0742 1.0249 25 1 -0.3633 0.9246 -0.4483 26 1 -0.3633 -0.8506 -0.5767 27 1 0.0146 3.0516 1.5353 28 1 0.7591 -2.5302 -0.8897 29 1 0.7585 -2.5298 0.8903 30 1 2.5759 -3.7186 -2.0134 31 1 1.8614 -5.0419 2.2471 32 1 0.6336 -7.1655 2.4526 33 1 -0.2818 -8.2586 0.4451 34 1 1.2539 -5.0941 -1.9738 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270562719.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:18 Heat of formation + Delta-G solvation = -120.235182 kcal Electronic energy + Delta-G solvation = -19873.705065 eV Core-core repulsion = 16492.494197 eV Total energy + Delta-G solvation = -3381.210868 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.89271 -40.95097 -39.91436 -37.74874 -36.49927 -33.73745 -32.96239 -31.60193 -30.69270 -28.14525 -26.64608 -25.15274 -23.61662 -22.35929 -20.74542 -19.07717 -18.77791 -17.75025 -17.57354 -17.10705 -16.96577 -16.58499 -16.51373 -16.35142 -15.74989 -15.31132 -14.94740 -14.69791 -14.25898 -14.08124 -13.66742 -13.42159 -13.23825 -13.11224 -12.83747 -12.76737 -12.65191 -12.40520 -12.25764 -12.13965 -11.99383 -11.14108 -10.97438 -10.32993 -9.93319 -9.65364 -9.63190 -8.33078 -5.97603 0.14505 0.22812 1.37725 1.40955 1.53070 2.08075 2.28438 2.56639 3.01423 3.09761 3.25367 3.53345 3.64020 3.79766 3.93054 4.08222 4.18519 4.22584 4.40007 4.43654 4.63803 4.73706 4.84183 4.86234 5.03872 5.09896 5.15428 5.35392 5.37391 5.45848 5.52618 5.91845 6.12695 6.51391 6.79755 7.20282 7.50769 8.08710 8.70210 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.037250 B = 0.004060 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.501754 B = 6894.556949 C = 7007.564265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.469 5.469 3 C -0.344 4.344 4 H 0.067 0.933 5 C -0.002 4.002 6 N -0.898 5.898 7 Si 0.987 3.013 8 H -0.265 1.265 9 H -0.273 1.273 10 H -0.278 1.278 11 C 0.440 3.560 12 O -0.621 6.621 13 C -0.144 4.144 14 C 0.174 3.826 15 H 0.094 0.906 16 O -0.559 6.559 17 C -0.089 4.089 18 C -0.126 4.126 19 C -0.082 4.082 20 C -0.153 4.153 21 C 0.083 3.917 22 F -0.147 7.147 23 C -0.153 4.153 24 H 0.043 0.957 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.273 0.727 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.378 0.622 31 H 0.142 0.858 32 H 0.166 0.834 33 H 0.157 0.843 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.012 -16.485 -0.489 17.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.189 5.189 3 C -0.472 4.472 4 H 0.085 0.915 5 C -0.203 4.203 6 N -0.537 5.537 7 Si 0.811 3.189 8 H -0.190 1.190 9 H -0.198 1.198 10 H -0.203 1.203 11 C 0.230 3.770 12 O -0.507 6.507 13 C -0.184 4.184 14 C 0.114 3.886 15 H 0.112 0.888 16 O -0.365 6.365 17 C -0.090 4.090 18 C -0.144 4.144 19 C -0.099 4.099 20 C -0.172 4.172 21 C 0.064 3.936 22 F -0.126 7.126 23 C -0.172 4.172 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.227 0.773 31 H 0.160 0.840 32 H 0.184 0.816 33 H 0.175 0.825 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.108 -16.285 -0.034 17.068 hybrid contribution -0.236 0.991 -0.666 1.217 sum -5.344 -15.295 -0.700 16.216 Atomic orbital electron populations 1.21413 0.79525 1.00668 1.00532 1.43860 1.06641 1.04698 1.63659 1.19581 1.00312 0.86370 1.40921 0.91456 1.26041 0.97079 1.02817 0.94408 1.70051 1.19774 1.30658 1.33203 0.85033 0.78260 0.77263 0.78390 1.19048 1.19797 1.20260 1.20948 0.87993 0.86183 0.81871 1.90527 1.16011 1.87884 1.56287 1.22238 0.99002 0.91474 1.05659 1.20369 0.91364 0.88441 0.88385 0.88774 1.86730 1.37885 1.96139 1.15780 1.20343 0.97956 0.96563 0.94106 1.21380 0.99494 0.96453 0.97061 1.21348 0.95038 0.94029 0.99513 1.21483 1.02702 1.02342 0.90673 1.17827 0.98908 0.93394 0.83500 1.91482 1.85572 1.83123 1.52441 1.20962 1.00284 0.95679 1.00276 0.93844 0.92670 0.91512 0.91767 0.87600 0.87463 0.77300 0.84011 0.81641 0.82491 0.84112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.28 8.44 127.77 1.08 6.36 16 2 N -0.47 -24.26 3.01 -658.89 -1.98 -26.24 16 3 C -0.34 -19.85 9.24 84.04 0.78 -19.07 16 4 H 0.07 4.19 7.45 -2.91 -0.02 4.17 16 5 C 0.00 -0.10 5.04 84.93 0.43 0.32 16 6 N -0.90 -47.84 10.83 21.66 0.23 -47.60 16 7 Si 0.99 42.98 29.57 68.60 2.03 45.01 16 8 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 9 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 11 C 0.44 21.37 7.51 87.66 0.66 22.03 16 12 O -0.62 -35.60 15.13 10.69 0.16 -35.44 16 13 C -0.14 -4.81 3.97 29.85 0.12 -4.69 16 14 C 0.17 5.45 2.76 29.85 0.08 5.53 16 15 H 0.09 3.33 7.86 -2.39 -0.02 3.31 16 16 O -0.56 -19.14 12.37 -135.19 -1.67 -20.81 16 17 C -0.09 -2.15 5.00 -19.87 -0.10 -2.25 16 18 C -0.13 -2.53 9.68 22.27 0.22 -2.31 16 19 C -0.08 -1.27 10.04 22.26 0.22 -1.05 16 20 C -0.15 -2.58 10.03 22.31 0.22 -2.36 16 21 C 0.08 1.76 7.30 22.38 0.16 1.92 16 22 F -0.15 -3.33 17.27 44.97 0.78 -2.55 16 23 C -0.15 -3.43 9.31 22.31 0.21 -3.23 16 24 H 0.04 1.92 7.83 -2.39 -0.02 1.90 16 25 H 0.05 2.57 6.80 -2.39 -0.02 2.56 16 26 H 0.07 2.27 6.61 -2.39 -0.02 2.25 16 27 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 28 H 0.11 3.00 7.41 -2.38 -0.02 2.98 16 29 H 0.11 3.22 8.11 -2.39 -0.02 3.20 16 30 H 0.38 9.73 7.39 -74.05 -0.55 9.18 16 31 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 32 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.14 2.80 6.61 -2.91 -0.02 2.78 16 Total: -1.00 -72.25 296.38 4.21 -68.04 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.59 Total: 18.39 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 4.08 Total: 1.21 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -1.75 Total: -73.85 kcal Atomic # 8 Polarization: -54.74 SS G_CDS: -1.51 Total: -56.25 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.78 Total: -2.55 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -72.25 4.21 -68.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270562719.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.197 kcal (2) G-P(sol) polarization free energy of solvation -72.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds