Wall clock time and date at job start Mon Mar 30 2020 00:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35695 * 117.00079 * 2 1 4 4 C 1.38688 * 120.12597 * 359.72284 * 3 2 1 5 5 C 1.38044 * 120.11588 * 180.27550 * 4 3 2 6 6 C 1.38734 * 120.36544 * 0.02562 * 5 4 3 7 7 F 1.35095 * 119.87770 * 180.02562 * 6 5 4 8 8 C 1.37983 * 120.24856 * 359.97438 * 6 5 4 9 9 C 1.39723 * 119.88032 * 0.02562 * 8 6 5 10 10 C 1.47537 * 120.18301 * 179.97438 * 9 8 6 11 11 O 1.21584 * 120.00260 * 180.02562 * 10 9 8 12 12 N 1.34781 * 119.99712 * 0.02562 * 10 9 8 13 13 C 1.46493 * 120.00043 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47280 * 179.97438 * 13 12 10 15 15 C 1.50705 * 109.47419 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99482 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00247 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99760 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00299 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46683 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47146 * 119.99647 * 19 17 15 22 22 H 1.48495 * 109.47205 * 240.00084 * 19 17 15 23 23 H 1.09000 * 109.47314 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47365 * 300.00240 * 1 2 3 25 25 H 1.09004 * 109.47337 * 59.99907 * 1 2 3 26 26 H 1.08007 * 119.93781 * 0.25059 * 4 3 2 27 27 H 1.07998 * 119.82006 * 179.97438 * 5 4 3 28 28 H 1.07995 * 120.06271 * 180.02562 * 8 6 5 29 29 H 0.96998 * 119.99657 * 359.97438 * 12 10 9 30 30 H 1.09006 * 109.47300 * 299.99619 * 13 12 10 31 31 H 1.08997 * 109.47742 * 59.99095 * 13 12 10 32 32 H 1.09004 * 109.47212 * 299.99499 * 14 13 12 33 33 H 1.09000 * 109.47226 * 59.99731 * 14 13 12 34 34 H 0.97005 * 119.99866 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2923 2.3738 -0.0058 5 6 1.9193 3.6037 -0.0115 6 6 3.3042 3.6848 -0.0121 7 9 3.9075 4.8936 -0.0172 8 6 4.0679 2.5356 -0.0064 9 6 3.4440 1.2854 -0.0005 10 6 4.2541 0.0523 0.0050 11 8 3.7078 -1.0339 0.0096 12 7 5.5996 0.1299 0.0050 13 6 6.4040 -1.0944 0.0100 14 6 7.8896 -0.7287 0.0082 15 6 8.7171 -1.9882 0.0140 16 1 8.2318 -2.9530 0.0180 17 6 10.0935 -1.9088 0.0130 18 7 10.6844 -0.7338 0.0066 19 14 11.1192 -3.4700 0.0194 20 1 10.2208 -4.6524 0.0244 21 1 11.9755 -3.5047 -1.1934 22 1 11.9766 -3.4940 1.2316 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 0.2137 2.3185 -0.0062 27 1 1.3284 4.5077 -0.0165 28 1 5.1458 2.6023 -0.0064 29 1 6.0354 0.9965 0.0010 30 1 6.1739 -1.6768 0.9023 31 1 6.1742 -1.6838 -0.8776 32 1 8.1195 -0.1467 -0.8843 33 1 8.1197 -0.1392 0.8957 34 1 11.6528 -0.6779 0.0055 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273033859.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:15 Heat of formation + Delta-G solvation = -99.243863 kcal Electronic energy + Delta-G solvation = -19400.349656 eV Core-core repulsion = 16020.049040 eV Total energy + Delta-G solvation = -3380.300616 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.97484 -40.59992 -38.73514 -37.24388 -34.82866 -32.91558 -31.80191 -29.94663 -29.44555 -27.41338 -25.21626 -23.80535 -22.36855 -21.03922 -20.34700 -18.56265 -17.68192 -17.14913 -16.37902 -16.10099 -15.92767 -15.54588 -15.02303 -14.83561 -14.75963 -14.65174 -14.43088 -13.37607 -13.15719 -13.07596 -12.94521 -12.40497 -12.28525 -12.09252 -11.41488 -11.16453 -11.13730 -11.03682 -10.61263 -10.32360 -9.79332 -9.45859 -9.45225 -9.18117 -8.54262 -8.38667 -8.24233 -6.08012 -4.10688 0.55942 0.95862 2.86502 3.04447 3.29742 3.37121 3.41903 3.58191 3.74785 4.04086 4.36932 4.41786 4.45819 4.75265 4.93183 4.94566 4.98524 5.27089 5.29226 5.31055 5.43377 5.68017 5.78644 5.86445 6.36606 6.37319 6.40219 6.75699 6.91887 7.13572 7.53545 7.63137 7.90409 8.01094 8.29333 8.65875 8.95541 9.54196 11.03678 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025440 B = 0.003941 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.379570 B = 7102.972349 C = 8177.602099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.274 6.274 3 C 0.173 3.827 4 C -0.194 4.194 5 C -0.091 4.091 6 C 0.052 3.948 7 F -0.138 7.138 8 C -0.082 4.082 9 C -0.136 4.136 10 C 0.550 3.450 11 O -0.524 6.524 12 N -0.719 5.719 13 C 0.123 3.877 14 C 0.011 3.989 15 C -0.520 4.520 16 H 0.060 0.940 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.103 0.897 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.143 0.857 27 H 0.141 0.859 28 H 0.149 0.851 29 H 0.395 0.605 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.141 9.652 -0.043 22.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.185 6.185 3 C 0.124 3.876 4 C -0.213 4.213 5 C -0.110 4.110 6 C 0.033 3.967 7 F -0.117 7.117 8 C -0.101 4.101 9 C -0.140 4.140 10 C 0.336 3.664 11 O -0.401 6.401 12 N -0.370 5.370 13 C 0.001 3.999 14 C -0.026 4.026 15 C -0.559 4.559 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.122 0.878 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.161 0.839 27 H 0.159 0.841 28 H 0.167 0.833 29 H 0.230 0.770 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.235 8.742 -0.041 22.043 hybrid contribution 0.767 0.165 0.000 0.784 sum -19.468 8.908 -0.040 21.409 Atomic orbital electron populations 1.23194 0.78779 1.04518 1.01080 1.86446 1.20652 1.24882 1.86495 1.19066 0.90981 0.85102 0.92403 1.21067 1.00602 0.91016 1.08609 1.21048 0.92695 0.98757 0.98513 1.17344 0.90852 0.80504 1.08050 1.91514 1.83672 1.42077 1.94411 1.21254 1.01102 0.89960 0.97795 1.19405 0.91022 0.93957 1.09629 1.17841 0.82549 0.88038 0.78020 1.90804 1.71671 1.28335 1.49296 1.46267 1.05435 1.11410 1.73851 1.21746 0.92686 0.84495 1.00969 1.19346 0.87450 0.97946 0.97902 1.21088 0.91101 0.92543 1.51169 0.92151 1.24997 0.98023 0.96280 0.95004 1.69971 1.09653 1.23188 1.50502 0.86458 0.80172 0.83350 0.77598 1.19569 1.20950 1.20944 0.87825 0.92575 0.92570 0.83906 0.84130 0.83330 0.77031 0.92365 0.92374 0.95881 0.95884 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.27 -3.81 8.57 -40.69 -0.35 -4.15 16 3 C 0.17 2.27 6.70 -38.72 -0.26 2.01 16 4 C -0.19 -1.84 9.03 -39.49 -0.36 -2.20 16 5 C -0.09 -0.84 10.01 -39.47 -0.39 -1.24 16 6 C 0.05 0.59 7.28 -39.49 -0.29 0.30 16 7 F -0.14 -1.63 17.26 2.25 0.04 -1.59 16 8 C -0.08 -1.01 9.51 -39.12 -0.37 -1.38 16 9 C -0.14 -1.99 5.89 -104.85 -0.62 -2.61 16 10 C 0.55 10.07 7.76 -12.47 -0.10 9.98 16 11 O -0.52 -11.35 15.16 -16.61 -0.25 -11.60 16 12 N -0.72 -13.08 5.51 -61.35 -0.34 -13.42 16 13 C 0.12 2.66 5.61 -4.05 -0.02 2.64 16 14 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 15 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 16 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 19 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 25 H 0.06 0.35 7.65 -51.93 -0.40 -0.05 16 26 H 0.14 0.91 6.30 -52.48 -0.33 0.57 16 27 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 28 H 0.15 1.66 6.40 -52.49 -0.34 1.32 16 29 H 0.40 6.21 6.50 -40.82 -0.27 5.95 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 301.23 15.07 4.54 4.54 Total: -1.00 -33.18 301.23 -6.42 -39.60 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -3.81 Total: 0.15 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -1.97 Total: -4.49 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.40 Total: -38.91 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.60 Total: -15.75 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.18 -6.42 -39.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273033859.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.643 kcal (2) G-P(sol) polarization free energy of solvation -33.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds