Wall clock time and date at job start Mon Mar 30 2020 00:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35695 * 117.00079 * 2 1 4 4 C 1.38688 * 120.12597 * 359.72284 * 3 2 1 5 5 C 1.38044 * 120.11588 * 180.27550 * 4 3 2 6 6 C 1.38734 * 120.36544 * 0.02562 * 5 4 3 7 7 F 1.35095 * 119.87770 * 180.02562 * 6 5 4 8 8 C 1.37983 * 120.24856 * 359.97438 * 6 5 4 9 9 C 1.39723 * 119.88032 * 0.02562 * 8 6 5 10 10 C 1.47537 * 120.18301 * 179.97438 * 9 8 6 11 11 O 1.21584 * 120.00260 * 180.02562 * 10 9 8 12 12 N 1.34781 * 119.99712 * 0.02562 * 10 9 8 13 13 C 1.46493 * 120.00043 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47280 * 179.97438 * 13 12 10 15 15 C 1.50705 * 109.47419 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99482 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00247 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99760 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00299 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46683 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47146 * 119.99647 * 19 17 15 22 22 H 1.48495 * 109.47205 * 240.00084 * 19 17 15 23 23 H 1.09000 * 109.47314 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47365 * 300.00240 * 1 2 3 25 25 H 1.09004 * 109.47337 * 59.99907 * 1 2 3 26 26 H 1.08007 * 119.93781 * 0.25059 * 4 3 2 27 27 H 1.07998 * 119.82006 * 179.97438 * 5 4 3 28 28 H 1.07995 * 120.06271 * 180.02562 * 8 6 5 29 29 H 0.96998 * 119.99657 * 359.97438 * 12 10 9 30 30 H 1.09006 * 109.47300 * 299.99619 * 13 12 10 31 31 H 1.08997 * 109.47742 * 59.99095 * 13 12 10 32 32 H 1.09004 * 109.47212 * 299.99499 * 14 13 12 33 33 H 1.09000 * 109.47226 * 59.99731 * 14 13 12 34 34 H 0.97005 * 119.99866 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2923 2.3738 -0.0058 5 6 1.9193 3.6037 -0.0115 6 6 3.3042 3.6848 -0.0121 7 9 3.9075 4.8936 -0.0172 8 6 4.0679 2.5356 -0.0064 9 6 3.4440 1.2854 -0.0005 10 6 4.2541 0.0523 0.0050 11 8 3.7078 -1.0339 0.0096 12 7 5.5996 0.1299 0.0050 13 6 6.4040 -1.0944 0.0100 14 6 7.8896 -0.7287 0.0082 15 6 8.7171 -1.9882 0.0140 16 1 8.2318 -2.9530 0.0180 17 6 10.0935 -1.9088 0.0130 18 7 10.6844 -0.7338 0.0066 19 14 11.1192 -3.4700 0.0194 20 1 10.2208 -4.6524 0.0244 21 1 11.9755 -3.5047 -1.1934 22 1 11.9766 -3.4940 1.2316 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 0.2137 2.3185 -0.0062 27 1 1.3284 4.5077 -0.0165 28 1 5.1458 2.6023 -0.0064 29 1 6.0354 0.9965 0.0010 30 1 6.1739 -1.6768 0.9023 31 1 6.1742 -1.6838 -0.8776 32 1 8.1195 -0.1467 -0.8843 33 1 8.1197 -0.1392 0.8957 34 1 11.6528 -0.6779 0.0055 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273033859.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:15 Heat of formation + Delta-G solvation = -120.689277 kcal Electronic energy + Delta-G solvation = -19401.279599 eV Core-core repulsion = 16020.049040 eV Total energy + Delta-G solvation = -3381.230559 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.86085 -41.62842 -40.03880 -38.17010 -36.59135 -34.85641 -32.95579 -31.21125 -30.80663 -28.14751 -26.96868 -25.08311 -23.41095 -22.72892 -21.70890 -19.60686 -18.74376 -18.46693 -18.02274 -17.12168 -17.00567 -16.48533 -16.40431 -16.33766 -16.29123 -15.80242 -15.49877 -14.82570 -14.58134 -14.29905 -14.05421 -13.82033 -13.32423 -13.22473 -12.94294 -12.85030 -12.51990 -12.25871 -12.21199 -11.89341 -11.68080 -11.44306 -10.88182 -10.61351 -10.38016 -10.01868 -9.20547 -8.24342 -6.34940 -0.37900 0.08685 1.41369 1.42085 1.55560 1.74602 2.16186 2.27415 2.44023 2.60905 3.10488 3.14918 3.53373 3.59687 3.96414 4.03769 4.30162 4.35043 4.42812 4.47792 4.47931 4.58869 4.75175 4.83298 4.84752 4.97787 5.03931 5.25246 5.47512 5.56531 5.57549 5.77793 6.15279 6.32810 6.58095 6.78218 7.21892 7.34496 8.87875 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025440 B = 0.003941 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.379570 B = 7102.972349 C = 8177.602099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.313 6.313 3 C 0.165 3.835 4 C -0.179 4.179 5 C -0.069 4.069 6 C 0.042 3.958 7 F -0.141 7.141 8 C -0.083 4.083 9 C -0.169 4.169 10 C 0.550 3.450 11 O -0.565 6.565 12 N -0.716 5.716 13 C 0.142 3.858 14 C 0.022 3.978 15 C -0.546 4.546 16 H 0.059 0.941 17 C 0.007 3.993 18 N -0.927 5.927 19 Si 0.966 3.034 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.276 1.276 23 H 0.108 0.892 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.183 0.817 27 H 0.180 0.820 28 H 0.150 0.850 29 H 0.407 0.593 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.009 0.991 33 H 0.009 0.991 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.929 10.661 -0.048 24.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.224 6.224 3 C 0.116 3.884 4 C -0.197 4.197 5 C -0.087 4.087 6 C 0.023 3.977 7 F -0.120 7.120 8 C -0.103 4.103 9 C -0.173 4.173 10 C 0.338 3.662 11 O -0.445 6.445 12 N -0.368 5.368 13 C 0.019 3.981 14 C -0.016 4.016 15 C -0.585 4.585 16 H 0.078 0.922 17 C -0.192 4.192 18 N -0.566 5.566 19 Si 0.791 3.209 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.126 0.874 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.200 0.800 27 H 0.197 0.803 28 H 0.168 0.832 29 H 0.243 0.757 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.037 9.783 -0.046 24.111 hybrid contribution 1.208 -0.073 0.001 1.210 sum -20.830 9.710 -0.044 22.982 Atomic orbital electron populations 1.23532 0.76080 1.05729 1.03209 1.86395 1.23663 1.25898 1.86488 1.19328 0.90616 0.86234 0.92202 1.21432 1.02223 0.89468 1.06624 1.21492 0.91844 1.00133 0.95274 1.17478 0.91810 0.79854 1.08581 1.91510 1.83951 1.42057 1.94502 1.21237 1.01452 0.89848 0.97757 1.19107 0.91714 0.92661 1.13771 1.18405 0.82226 0.89068 0.76488 1.90764 1.72271 1.30226 1.51231 1.46080 1.05715 1.10787 1.74205 1.21252 0.91202 0.85669 0.99991 1.19153 0.89270 0.96748 0.96406 1.21486 0.92050 0.93405 1.51511 0.92247 1.25879 0.99232 0.99691 0.94354 1.70073 1.10213 1.25315 1.51048 0.85373 0.78372 0.79244 0.77916 1.18944 1.20182 1.20167 0.87371 0.90340 0.90320 0.80017 0.80303 0.83199 0.75676 0.93353 0.93364 0.97260 0.97262 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.31 -8.47 8.57 -69.21 -0.59 -9.06 16 3 C 0.16 4.10 6.70 22.83 0.15 4.25 16 4 C -0.18 -2.73 9.03 22.33 0.20 -2.52 16 5 C -0.07 -0.99 10.01 22.34 0.22 -0.77 16 6 C 0.04 0.86 7.28 22.33 0.16 1.02 16 7 F -0.14 -3.06 17.26 44.97 0.78 -2.28 16 8 C -0.08 -2.03 9.51 22.57 0.21 -1.82 16 9 C -0.17 -4.95 5.89 -20.01 -0.12 -5.07 16 10 C 0.55 20.88 7.76 86.70 0.67 21.55 16 11 O -0.56 -25.48 15.16 16.96 0.26 -25.22 16 12 N -0.72 -27.17 5.51 -466.29 -2.57 -29.74 16 13 C 0.14 6.43 5.61 86.38 0.48 6.91 16 14 C 0.02 1.12 5.09 29.85 0.15 1.28 16 15 C -0.55 -31.08 9.11 25.60 0.23 -30.85 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 17 C 0.01 0.41 5.46 84.65 0.46 0.87 16 18 N -0.93 -54.97 13.29 21.45 0.28 -54.69 16 19 Si 0.97 44.14 29.54 68.60 2.03 46.17 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 23 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.08 0.72 7.67 -2.39 -0.02 0.70 16 25 H 0.08 0.72 7.65 -2.38 -0.02 0.70 16 26 H 0.18 1.31 6.30 -2.91 -0.02 1.29 16 27 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 28 H 0.15 3.41 6.40 -2.91 -0.02 3.39 16 29 H 0.41 13.35 6.50 -92.71 -0.60 12.75 16 30 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 31 H 0.05 2.25 8.14 -2.39 -0.02 2.24 16 32 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.27 14.76 8.31 -92.70 -0.77 13.98 16 Total: -1.00 -73.43 301.23 4.67 -68.76 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 0.53 Total: 9.97 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 3.95 Total: -3.91 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -2.28 Total: -84.43 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -0.34 Total: -34.28 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.78 Total: -2.28 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -73.43 4.67 -68.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273033859.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.929 kcal (2) G-P(sol) polarization free energy of solvation -73.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds