Wall clock time and date at job start Mon Mar 30 2020 00:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 119.99825 * 2 1 4 4 C 1.53004 * 109.47196 * 90.00030 * 3 2 1 5 5 O 1.42893 * 109.47267 * 64.99900 * 4 3 2 6 6 C 1.35956 * 117.00026 * 179.97438 * 5 4 3 7 7 C 1.38657 * 120.06128 * 359.97438 * 6 5 4 8 8 C 1.38184 * 119.96964 * 180.02562 * 7 6 5 9 9 C 1.38265 * 120.09281 * 359.97438 * 8 7 6 10 10 C 1.38248 * 120.12705 * 0.02562 * 9 8 7 11 11 C 1.38332 * 120.03366 * 359.97438 * 10 9 8 12 12 F 1.35103 * 120.05240 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00460 * 179.97438 * 2 1 3 14 14 O 1.21687 * 120.00565 * 179.97438 * 13 2 1 15 15 C 1.46384 * 119.99509 * 0.02562 * 13 2 1 16 16 H 1.07995 * 119.99946 * 0.02562 * 15 13 2 17 17 C 1.40044 * 119.99949 * 179.97438 * 15 13 2 18 18 N 1.30674 * 120.00138 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00014 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47233 * 90.00240 * 19 17 15 21 21 H 1.48500 * 109.46847 * 210.00229 * 19 17 15 22 22 H 1.48498 * 109.46935 * 329.99756 * 19 17 15 23 23 H 1.08995 * 109.46872 * 89.99928 * 1 2 3 24 24 H 1.08997 * 109.47036 * 210.00432 * 1 2 3 25 25 H 1.09003 * 109.47410 * 330.00331 * 1 2 3 26 26 H 1.08997 * 109.47296 * 329.99130 * 3 2 1 27 27 H 1.09007 * 109.46911 * 209.99581 * 3 2 1 28 28 H 1.08994 * 109.46599 * 304.99374 * 4 3 2 29 29 H 1.09001 * 109.46881 * 185.00032 * 4 3 2 30 30 H 1.08004 * 120.01774 * 0.03769 * 7 6 5 31 31 H 1.08000 * 119.95526 * 180.27319 * 8 7 6 32 32 H 1.08001 * 119.93128 * 179.97438 * 9 8 7 33 33 H 1.07998 * 119.98480 * 180.02562 * 10 9 8 34 34 H 0.97001 * 120.00579 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 1.4425 5 8 3.3209 0.7727 2.0814 6 6 3.6503 1.0199 3.3771 7 6 3.1486 2.1416 4.0194 8 6 3.4850 2.3914 5.3362 9 6 4.3210 1.5238 6.0146 10 6 4.8234 0.4042 5.3780 11 6 4.4900 0.1492 4.0599 12 9 4.9804 -0.9452 3.4376 13 6 2.1389 -1.1671 0.0005 14 8 3.3558 -1.1672 0.0001 15 6 1.4070 -2.4348 0.0005 16 1 0.3271 -2.4348 -0.0003 17 6 2.1072 -3.6477 0.0005 18 7 3.4140 -3.6477 0.0010 19 14 1.1733 -5.2654 -0.0002 20 1 0.9264 -5.6938 -1.4004 21 1 1.9756 -6.3004 0.7000 22 1 -0.1245 -5.0879 0.6994 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.6085 2.0284 -0.5139 27 1 3.1500 1.1384 -0.5138 28 1 1.5061 1.7551 1.9814 29 1 2.9180 2.6961 1.4438 30 1 2.4950 2.8198 3.4909 31 1 3.0906 3.2628 5.8376 32 1 4.5826 1.7218 7.0436 33 1 5.4759 -0.2721 5.9103 34 1 3.8990 -4.4877 0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274012076.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:17 Heat of formation + Delta-G solvation = -82.852852 kcal Electronic energy + Delta-G solvation = -20474.030316 eV Core-core repulsion = 17094.440468 eV Total energy + Delta-G solvation = -3379.589849 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.18391 -39.66210 -37.79611 -36.79223 -33.88906 -32.31188 -30.55185 -30.43259 -28.87706 -26.08381 -25.40909 -23.41119 -22.20034 -21.52028 -19.02686 -18.14115 -16.71878 -16.40949 -16.22333 -15.81539 -15.40410 -14.90230 -14.74998 -14.18335 -14.11541 -13.98697 -13.84836 -13.07405 -12.47011 -12.27136 -12.12477 -11.90423 -11.47786 -11.42623 -11.33869 -11.21426 -11.08336 -10.85875 -10.70603 -10.45980 -10.17863 -10.01558 -8.77006 -8.75004 -7.84519 -7.43262 -7.16881 -6.07231 -4.52870 1.30006 1.48628 3.19388 3.25858 3.28994 3.52991 3.76969 4.15602 4.57211 4.59124 4.69779 4.87677 4.94066 5.27545 5.34002 5.45876 5.50876 5.58142 5.62919 5.86215 5.91180 6.01887 6.17353 6.23387 6.33782 6.37566 6.48795 6.54971 6.57573 6.90593 7.54001 7.62254 7.82542 8.21323 8.41735 9.13138 9.52664 10.70818 10.90713 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.006466 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.710306 B = 4329.521922 C = 5178.950027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.649 5.649 3 C 0.126 3.874 4 C 0.044 3.956 5 O -0.263 6.263 6 C 0.108 3.892 7 C -0.194 4.194 8 C -0.096 4.096 9 C -0.143 4.143 10 C -0.122 4.122 11 C 0.072 3.928 12 F -0.120 7.120 13 C 0.558 3.442 14 O -0.556 6.556 15 C -0.545 4.545 16 H 0.069 0.931 17 C 0.088 3.912 18 N -0.763 5.763 19 Si 0.903 3.097 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.266 1.266 23 H 0.031 0.969 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.133 0.867 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.137 0.863 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.676 11.593 8.561 14.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.388 5.388 3 C 0.001 3.999 4 C -0.033 4.033 5 O -0.175 6.175 6 C 0.060 3.940 7 C -0.213 4.213 8 C -0.114 4.114 9 C -0.162 4.162 10 C -0.141 4.141 11 C 0.052 3.948 12 F -0.098 7.098 13 C 0.363 3.637 14 O -0.436 6.436 15 C -0.582 4.582 16 H 0.087 0.913 17 C -0.132 4.132 18 N -0.392 5.392 19 Si 0.728 3.272 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.190 1.190 23 H 0.050 0.950 24 H 0.090 0.910 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.151 0.849 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.155 0.845 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.741 11.256 8.374 14.137 hybrid contribution -0.714 -0.718 0.014 1.013 sum -2.455 10.538 8.387 13.690 Atomic orbital electron populations 1.21385 0.82409 1.00923 0.99519 1.48090 1.04912 1.05183 1.80664 1.21047 0.98932 0.87964 0.91986 1.23502 0.92364 0.91153 0.96320 1.86601 1.62583 1.48508 1.19785 1.19329 0.94781 0.93716 0.86144 1.21146 1.05098 0.98379 0.96652 1.20904 0.97534 0.99266 0.93726 1.20784 1.00106 0.95086 1.00196 1.21001 1.01599 0.99184 0.92322 1.17159 0.99702 0.86527 0.91423 1.91619 1.85610 1.50238 1.82322 1.18215 0.87128 0.82008 0.76393 1.90628 1.13668 1.85783 1.53532 1.20964 0.93471 0.89358 1.54424 0.91302 1.25699 0.94565 1.00094 0.92818 1.70028 1.06918 1.27031 1.35222 0.86457 0.80194 0.81890 0.78703 1.19827 1.20514 1.19028 0.95033 0.90996 0.94445 0.90557 0.89741 0.92635 0.92552 0.84947 0.85660 0.85433 0.84508 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.88 10.15 59.85 0.61 2.49 16 2 N -0.65 -14.86 2.86 -183.24 -0.52 -15.39 16 3 C 0.13 2.38 5.86 -4.04 -0.02 2.36 16 4 C 0.04 0.75 5.08 37.16 0.19 0.94 16 5 O -0.26 -5.85 8.79 -27.33 -0.24 -6.09 16 6 C 0.11 2.07 6.69 -39.18 -0.26 1.80 16 7 C -0.19 -2.81 9.04 -39.45 -0.36 -3.16 16 8 C -0.10 -1.16 10.04 -39.59 -0.40 -1.55 16 9 C -0.14 -1.73 10.04 -39.57 -0.40 -2.13 16 10 C -0.12 -1.80 10.02 -39.54 -0.40 -2.20 16 11 C 0.07 1.40 7.31 -39.30 -0.29 1.11 16 12 F -0.12 -2.82 17.11 2.25 0.04 -2.78 16 13 C 0.56 16.21 7.24 -12.98 -0.09 16.12 16 14 O -0.56 -18.30 13.81 -2.53 -0.03 -18.33 16 15 C -0.55 -15.77 8.74 -35.63 -0.31 -16.08 16 16 H 0.07 1.82 6.00 -52.49 -0.31 1.51 16 17 C 0.09 2.53 5.50 -17.37 -0.10 2.44 16 18 N -0.76 -23.68 11.83 55.55 0.66 -23.02 16 19 Si 0.90 20.79 29.56 -169.99 -5.02 15.77 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 1.41 6.09 -51.93 -0.32 1.09 16 25 H 0.04 0.55 8.07 -51.93 -0.42 0.13 16 26 H 0.08 1.11 8.07 -51.93 -0.42 0.69 16 27 H 0.08 1.82 7.42 -51.92 -0.39 1.43 16 28 H 0.06 0.87 7.66 -51.93 -0.40 0.47 16 29 H 0.06 0.77 7.66 -51.93 -0.40 0.38 16 30 H 0.13 1.61 6.30 -52.48 -0.33 1.28 16 31 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16 34 H 0.27 7.56 8.29 -40.82 -0.34 7.22 16 LS Contribution 298.87 15.07 4.50 4.50 Total: -1.00 -37.16 298.87 -6.26 -43.42 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -3.81 Total: -0.20 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -1.83 Total: 2.12 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.13 Total: -38.41 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.28 Total: -24.43 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.04 Total: -2.78 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -37.16 -6.26 -43.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274012076.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.435 kcal (2) G-P(sol) polarization free energy of solvation -37.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds