Wall clock time and date at job start Mon Mar 30 2020 00:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 119.99825 * 2 1 4 4 C 1.53004 * 109.47196 * 90.00030 * 3 2 1 5 5 O 1.42893 * 109.47267 * 64.99900 * 4 3 2 6 6 C 1.35956 * 117.00026 * 179.97438 * 5 4 3 7 7 C 1.38657 * 120.06128 * 359.97438 * 6 5 4 8 8 C 1.38184 * 119.96964 * 180.02562 * 7 6 5 9 9 C 1.38265 * 120.09281 * 359.97438 * 8 7 6 10 10 C 1.38248 * 120.12705 * 0.02562 * 9 8 7 11 11 C 1.38332 * 120.03366 * 359.97438 * 10 9 8 12 12 F 1.35103 * 120.05240 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00460 * 179.97438 * 2 1 3 14 14 O 1.21687 * 120.00565 * 179.97438 * 13 2 1 15 15 C 1.46384 * 119.99509 * 0.02562 * 13 2 1 16 16 H 1.07995 * 119.99946 * 0.02562 * 15 13 2 17 17 C 1.40044 * 119.99949 * 179.97438 * 15 13 2 18 18 N 1.30674 * 120.00138 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00014 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47233 * 90.00240 * 19 17 15 21 21 H 1.48500 * 109.46847 * 210.00229 * 19 17 15 22 22 H 1.48498 * 109.46935 * 329.99756 * 19 17 15 23 23 H 1.08995 * 109.46872 * 89.99928 * 1 2 3 24 24 H 1.08997 * 109.47036 * 210.00432 * 1 2 3 25 25 H 1.09003 * 109.47410 * 330.00331 * 1 2 3 26 26 H 1.08997 * 109.47296 * 329.99130 * 3 2 1 27 27 H 1.09007 * 109.46911 * 209.99581 * 3 2 1 28 28 H 1.08994 * 109.46599 * 304.99374 * 4 3 2 29 29 H 1.09001 * 109.46881 * 185.00032 * 4 3 2 30 30 H 1.08004 * 120.01774 * 0.03769 * 7 6 5 31 31 H 1.08000 * 119.95526 * 180.27319 * 8 7 6 32 32 H 1.08001 * 119.93128 * 179.97438 * 9 8 7 33 33 H 1.07998 * 119.98480 * 180.02562 * 10 9 8 34 34 H 0.97001 * 120.00579 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 1.4425 5 8 3.3209 0.7727 2.0814 6 6 3.6503 1.0199 3.3771 7 6 3.1486 2.1416 4.0194 8 6 3.4850 2.3914 5.3362 9 6 4.3210 1.5238 6.0146 10 6 4.8234 0.4042 5.3780 11 6 4.4900 0.1492 4.0599 12 9 4.9804 -0.9452 3.4376 13 6 2.1389 -1.1671 0.0005 14 8 3.3558 -1.1672 0.0001 15 6 1.4070 -2.4348 0.0005 16 1 0.3271 -2.4348 -0.0003 17 6 2.1072 -3.6477 0.0005 18 7 3.4140 -3.6477 0.0010 19 14 1.1733 -5.2654 -0.0002 20 1 0.9264 -5.6938 -1.4004 21 1 1.9756 -6.3004 0.7000 22 1 -0.1245 -5.0879 0.6994 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.6085 2.0284 -0.5139 27 1 3.1500 1.1384 -0.5138 28 1 1.5061 1.7551 1.9814 29 1 2.9180 2.6961 1.4438 30 1 2.4950 2.8198 3.4909 31 1 3.0906 3.2628 5.8376 32 1 4.5826 1.7218 7.0436 33 1 5.4759 -0.2721 5.9103 34 1 3.8990 -4.4877 0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274012076.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:17 Heat of formation + Delta-G solvation = -109.331443 kcal Electronic energy + Delta-G solvation = -20475.178514 eV Core-core repulsion = 17094.440468 eV Total energy + Delta-G solvation = -3380.738046 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.75587 -40.96197 -39.55323 -38.24287 -35.81534 -34.52502 -31.90985 -31.61414 -30.21804 -28.16633 -26.98980 -24.86879 -23.40365 -22.93461 -20.91538 -19.44229 -18.40043 -17.99308 -17.65605 -17.54762 -17.16103 -16.46812 -16.02953 -15.87545 -15.66287 -15.47912 -15.29992 -14.58014 -14.19722 -13.71371 -13.47264 -13.32485 -13.15857 -13.03590 -12.98288 -12.77982 -12.69778 -12.44311 -12.13257 -12.05889 -11.90748 -11.76737 -10.89955 -9.91643 -9.66031 -9.12277 -9.02117 -8.22674 -6.78493 0.15495 0.33286 1.35881 1.39161 1.52914 2.23345 2.28235 2.54728 2.64905 2.93105 3.36921 3.67430 3.80127 3.92683 4.11513 4.21165 4.27760 4.33104 4.35904 4.40899 4.59270 4.67228 4.83302 5.02461 5.05575 5.05781 5.14658 5.28659 5.38912 5.41937 5.77090 5.84837 6.18025 6.44441 6.56175 6.92526 7.50213 8.57829 8.77429 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.006466 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.710306 B = 4329.521922 C = 5178.950027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.654 5.654 3 C 0.121 3.879 4 C 0.043 3.957 5 O -0.321 6.321 6 C 0.072 3.928 7 C -0.188 4.188 8 C -0.079 4.079 9 C -0.129 4.129 10 C -0.120 4.120 11 C 0.008 3.992 12 F -0.164 7.164 13 C 0.541 3.459 14 O -0.611 6.611 15 C -0.574 4.574 16 H 0.089 0.911 17 C 0.026 3.974 18 N -0.823 5.823 19 Si 0.992 3.008 20 H -0.259 1.259 21 H -0.277 1.277 22 H -0.248 1.248 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.083 0.917 26 H 0.130 0.870 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.159 0.841 31 H 0.175 0.825 32 H 0.173 0.827 33 H 0.152 0.848 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.399 13.805 10.635 18.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.391 5.391 3 C -0.003 4.003 4 C -0.033 4.033 5 O -0.235 6.235 6 C 0.026 3.974 7 C -0.207 4.207 8 C -0.096 4.096 9 C -0.147 4.147 10 C -0.138 4.138 11 C -0.012 4.012 12 F -0.143 7.143 13 C 0.346 3.654 14 O -0.495 6.495 15 C -0.611 4.611 16 H 0.107 0.893 17 C -0.189 4.189 18 N -0.453 5.453 19 Si 0.811 3.189 20 H -0.183 1.183 21 H -0.202 1.202 22 H -0.171 1.171 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.101 0.899 26 H 0.148 0.852 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.176 0.824 31 H 0.192 0.808 32 H 0.191 0.809 33 H 0.170 0.830 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.521 13.535 10.452 17.689 hybrid contribution 0.113 -1.199 -0.539 1.319 sum -4.408 12.337 9.913 16.429 Atomic orbital electron populations 1.21569 0.79467 1.02390 1.00925 1.47880 1.06887 1.05007 1.79329 1.21355 0.97614 0.87461 0.93888 1.23615 0.93133 0.91888 0.94669 1.86532 1.64144 1.50942 1.21842 1.19737 0.96350 0.95735 0.85624 1.21498 1.04609 0.96797 0.97764 1.21525 0.95628 1.00001 0.92482 1.21364 0.98285 0.93116 1.01887 1.21326 1.01492 1.00534 0.90463 1.17994 1.02703 0.86786 0.93700 1.91487 1.86650 1.52691 1.83494 1.18554 0.86749 0.84169 0.75954 1.90584 1.16025 1.87247 1.55692 1.21539 0.94657 0.90223 1.54641 0.89276 1.26990 0.95440 1.04965 0.91487 1.70241 1.09546 1.28393 1.37087 0.85119 0.78822 0.75477 0.79481 1.18302 1.20247 1.17098 0.93516 0.92641 0.89853 0.85243 0.93771 0.90679 0.88894 0.82352 0.80775 0.80910 0.83005 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.47 10.15 127.77 1.30 4.77 16 2 N -0.65 -30.21 2.86 -851.87 -2.43 -32.65 16 3 C 0.12 4.55 5.86 86.38 0.51 5.06 16 4 C 0.04 1.44 5.08 71.98 0.37 1.80 16 5 O -0.32 -15.01 8.79 -85.67 -0.75 -15.76 16 6 C 0.07 2.84 6.69 22.53 0.15 2.99 16 7 C -0.19 -4.96 9.04 22.36 0.20 -4.76 16 8 C -0.08 -1.52 10.04 22.26 0.22 -1.30 16 9 C -0.13 -2.61 10.04 22.28 0.22 -2.38 16 10 C -0.12 -3.48 10.02 22.29 0.22 -3.25 16 11 C 0.01 0.32 7.31 22.45 0.16 0.48 16 12 F -0.16 -8.65 17.11 44.97 0.77 -7.88 16 13 C 0.54 33.02 7.24 86.36 0.62 33.64 16 14 O -0.61 -43.24 13.81 3.09 0.04 -43.20 16 15 C -0.57 -34.27 8.74 24.83 0.22 -34.05 16 16 H 0.09 4.75 6.00 -2.91 -0.02 4.73 16 17 C 0.03 1.52 5.50 85.30 0.47 1.99 16 18 N -0.82 -54.14 11.83 21.83 0.26 -53.88 16 19 Si 0.99 43.69 29.56 68.60 2.03 45.72 16 20 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 21 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.25 -10.06 7.11 99.48 0.71 -9.36 16 23 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.05 2.11 6.09 -2.39 -0.01 2.10 16 25 H 0.08 2.14 8.07 -2.39 -0.02 2.12 16 26 H 0.13 3.39 8.07 -2.39 -0.02 3.37 16 27 H 0.04 2.01 7.42 -2.38 -0.02 1.99 16 28 H 0.08 2.16 7.66 -2.39 -0.02 2.14 16 29 H 0.09 2.35 7.66 -2.39 -0.02 2.33 16 30 H 0.16 3.21 6.30 -2.91 -0.02 3.19 16 31 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 32 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 34 H 0.27 16.22 8.29 -92.71 -0.77 15.45 16 Total: -1.00 -92.66 298.87 5.70 -86.96 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 1.12 Total: 15.71 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 4.67 Total: 4.99 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -2.18 Total: -86.53 kcal Atomic # 8 Polarization: -58.25 SS G_CDS: -0.71 Total: -58.96 kcal Atomic # 9 Polarization: -8.65 SS G_CDS: 0.77 Total: -7.88 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -92.66 5.70 -86.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274012076.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.372 kcal (2) G-P(sol) polarization free energy of solvation -92.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds